Wall clock time and date at job start Mon Mar 30 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 119.61952 * 2 1 4 4 C 1.38625 * 119.16079 * 180.02562 * 3 2 1 5 5 C 1.38678 * 118.42261 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.42048 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47096 * 89.99824 * 6 5 4 8 8 H 1.08993 * 109.88031 * 305.42522 * 7 6 5 9 9 N 1.47440 * 109.88598 * 66.45787 * 7 6 5 10 10 C 1.47848 * 108.56945 * 118.41728 * 9 7 6 11 11 C 1.54904 * 104.79770 * 24.09075 * 10 9 7 12 12 C 1.54321 * 109.88769 * 184.22202 * 7 6 5 13 13 H 1.09000 * 110.70478 * 336.69432 * 12 7 6 14 14 C 1.50696 * 110.70381 * 99.93307 * 12 7 6 15 15 H 1.08000 * 120.00369 * 359.97438 * 14 12 7 16 16 C 1.37886 * 120.00061 * 180.02562 * 14 12 7 17 17 N 1.31512 * 119.99838 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00040 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47288 * 59.99639 * 18 16 14 20 20 H 1.48500 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47036 * 299.99407 * 18 16 14 22 22 C 1.38176 * 119.15888 * 0.02562 * 5 4 3 23 23 N 1.31852 * 119.61526 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47533 * 89.99673 * 1 2 3 25 25 H 1.09004 * 109.47260 * 209.99836 * 1 2 3 26 26 H 1.08996 * 109.46964 * 330.00159 * 1 2 3 27 27 H 1.07999 * 120.42275 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.79030 * 179.72829 * 4 3 2 29 29 H 1.08995 * 109.47078 * 210.00446 * 6 5 4 30 30 H 1.09000 * 109.47377 * 330.00145 * 6 5 4 31 31 H 1.00904 * 111.00058 * 240.68129 * 9 7 6 32 32 H 1.09003 * 110.37437 * 142.92709 * 10 9 7 33 33 H 1.09006 * 110.36726 * 265.15377 * 10 9 7 34 34 H 1.08997 * 110.98870 * 81.02353 * 11 10 9 35 35 H 1.08992 * 110.99167 * 204.84542 * 11 10 9 36 36 H 0.96999 * 120.00453 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.61596 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0990 -0.0017 7 6 6.2428 -0.1201 1.4404 8 1 5.8429 0.7333 1.9878 9 7 5.8343 -1.3745 2.0988 10 6 7.0504 -2.1174 2.4926 11 6 8.1519 -1.0354 2.6174 12 6 7.7855 -0.0794 1.4517 13 1 8.1877 -0.4496 0.5087 14 6 8.2795 1.3164 1.7322 15 1 7.5730 2.1177 1.8907 16 6 9.6337 1.5708 1.7853 17 7 10.4941 0.5952 1.5918 18 14 10.2460 3.3011 2.1322 19 1 9.7449 3.7473 3.4570 20 1 11.7310 3.3089 2.1370 21 1 9.7491 4.2225 1.0790 22 6 3.4765 -1.1948 -0.0005 23 7 2.1586 -1.1463 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6508 2.1373 0.0004 28 1 4.1366 2.1138 -0.0050 29 1 6.0566 -1.0038 -0.5154 30 1 6.1330 0.7744 -0.5162 31 1 5.2490 -1.1887 2.8995 32 1 6.8975 -2.6156 3.4500 33 1 7.3158 -2.8448 1.7252 34 1 8.0887 -0.5229 3.5772 35 1 9.1418 -1.4674 2.4714 36 1 11.4467 0.7740 1.6295 37 1 3.9753 -2.1527 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:44 Heat of formation + Delta-G solvation = 16.214300 kcal Electronic energy + Delta-G solvation = -17569.495829 eV Core-core repulsion = 14924.519065 eV Total energy + Delta-G solvation = -2644.976764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00357 -37.81031 -33.80738 -32.71085 -31.99935 -30.18853 -28.98537 -27.28964 -25.17270 -23.54868 -23.02365 -21.24563 -19.88352 -18.93263 -16.99887 -16.26388 -15.77215 -15.04035 -14.80911 -14.65855 -14.29558 -13.97766 -12.98533 -12.82311 -12.67506 -12.44755 -12.39032 -12.13573 -11.93058 -11.54721 -11.37310 -11.02141 -10.78195 -10.71770 -10.43556 -10.35894 -9.73783 -9.53849 -9.32837 -9.05032 -8.93428 -8.45564 -8.36600 -7.68593 -6.08296 -4.11791 1.43418 1.60103 3.26650 3.32163 3.34055 4.07710 4.37487 4.56396 4.94438 4.99874 5.22044 5.24834 5.29658 5.43418 5.57878 5.63071 5.66683 5.82782 5.88302 6.07163 6.11507 6.16224 6.30416 6.34690 6.41771 6.49450 6.61989 6.70957 6.82487 7.05011 7.08437 7.17652 7.55796 7.60262 7.80557 7.92417 8.09038 8.30613 8.36140 8.90409 9.52755 11.01413 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.005637 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.653453 B = 4966.106732 C = 5638.908061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.102 3.898 3 C -0.176 4.176 4 C -0.080 4.080 5 C -0.111 4.111 6 C -0.058 4.058 7 C 0.085 3.915 8 H 0.051 0.949 9 N -0.685 5.685 10 C 0.042 3.958 11 C -0.130 4.130 12 C 0.045 3.955 13 H 0.039 0.961 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.120 3.880 23 N -0.491 5.491 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.324 0.676 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.261 0.739 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 -0.905 -1.995 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.097 4.097 7 C -0.024 4.024 8 H 0.069 0.931 9 N -0.313 5.313 10 C -0.088 4.088 11 C -0.169 4.169 12 C 0.026 3.974 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.072 0.928 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.037 4.037 23 N -0.200 5.200 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.607 -2.094 -2.614 14.013 hybrid contribution 1.360 2.345 1.069 2.914 sum -12.247 0.252 -1.545 12.347 Atomic orbital electron populations 1.20626 0.89597 1.02894 1.02467 1.21138 0.96593 0.88715 0.97062 1.21834 0.94923 0.98827 1.03963 1.21562 0.94092 0.98397 0.96507 1.21095 0.98293 0.93511 0.98393 1.20613 0.88220 1.02609 0.98271 1.22302 0.98067 0.89760 0.92294 0.93096 1.61691 1.18131 1.21167 1.30278 1.22910 0.90673 0.97004 0.98169 1.23046 0.97949 0.95948 0.99977 1.19811 0.87533 0.95102 0.94960 0.94336 1.21048 0.91534 0.93670 1.49203 0.92770 1.24961 0.96984 0.96753 0.95000 1.69943 1.01930 1.31415 1.49245 0.86706 0.77667 0.85054 0.78863 1.20351 1.21276 1.20218 1.22657 0.88358 0.98542 0.94163 1.67502 1.10364 1.29181 1.12957 0.91035 0.90888 0.91251 0.85624 0.85106 0.91005 0.90653 0.86161 0.93563 0.91831 0.93423 0.91192 0.92928 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.17 36.00 0.37 -0.64 16 2 C 0.10 1.43 6.78 -82.59 -0.56 0.87 16 3 C -0.18 -2.34 9.74 -39.44 -0.38 -2.72 16 4 C -0.08 -1.18 9.86 -39.28 -0.39 -1.57 16 5 C -0.11 -1.78 4.99 -104.48 -0.52 -2.30 16 6 C -0.06 -1.03 4.92 -27.88 -0.14 -1.17 16 7 C 0.09 1.68 2.91 -66.72 -0.19 1.49 16 8 H 0.05 1.06 7.64 -51.93 -0.40 0.66 16 9 N -0.69 -12.26 6.53 -103.81 -0.68 -12.94 16 10 C 0.04 0.77 7.57 -2.30 -0.02 0.75 16 11 C -0.13 -2.92 5.94 -24.59 -0.15 -3.06 16 12 C 0.05 1.07 2.31 -89.95 -0.21 0.86 16 13 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 14 C -0.52 -13.58 8.47 -34.44 -0.29 -13.87 16 15 H 0.05 1.41 7.53 -52.49 -0.40 1.01 16 16 C 0.07 1.76 5.36 -17.82 -0.10 1.66 16 17 N -0.89 -24.88 12.49 55.43 0.69 -24.19 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.12 1.91 10.57 -17.55 -0.19 1.73 16 23 N -0.49 -7.82 10.27 -9.48 -0.10 -7.92 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.07 1.27 8.09 -51.93 -0.42 0.84 16 30 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.32 5.50 8.91 -39.29 -0.35 5.15 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 35 H 0.07 1.70 7.76 -51.93 -0.40 1.30 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -28.06 306.79 -8.97 -37.03 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.72 Total: 5.59 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.76 Total: -17.97 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.08 Total: -45.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.06 -8.97 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.245 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds