Wall clock time and date at job start Mon Mar 30 2020 03:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 119.61952 * 2 1 4 4 C 1.38625 * 119.16079 * 180.02562 * 3 2 1 5 5 C 1.38678 * 118.42261 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.42048 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47096 * 89.99824 * 6 5 4 8 8 H 1.08993 * 109.88031 * 305.42522 * 7 6 5 9 9 N 1.47440 * 109.88598 * 66.45787 * 7 6 5 10 10 C 1.47848 * 108.56945 * 118.41728 * 9 7 6 11 11 C 1.54904 * 104.79770 * 24.09075 * 10 9 7 12 12 C 1.54321 * 109.88769 * 184.22202 * 7 6 5 13 13 H 1.09000 * 110.70478 * 336.69432 * 12 7 6 14 14 C 1.50696 * 110.70381 * 99.93307 * 12 7 6 15 15 H 1.08000 * 120.00369 * 359.97438 * 14 12 7 16 16 C 1.37886 * 120.00061 * 180.02562 * 14 12 7 17 17 N 1.31512 * 119.99838 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00040 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47288 * 59.99639 * 18 16 14 20 20 H 1.48500 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47036 * 299.99407 * 18 16 14 22 22 C 1.38176 * 119.15888 * 0.02562 * 5 4 3 23 23 N 1.31852 * 119.61526 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47533 * 89.99673 * 1 2 3 25 25 H 1.09004 * 109.47260 * 209.99836 * 1 2 3 26 26 H 1.08996 * 109.46964 * 330.00159 * 1 2 3 27 27 H 1.07999 * 120.42275 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.79030 * 179.72829 * 4 3 2 29 29 H 1.08995 * 109.47078 * 210.00446 * 6 5 4 30 30 H 1.09000 * 109.47377 * 330.00145 * 6 5 4 31 31 H 1.00904 * 111.00058 * 240.68129 * 9 7 6 32 32 H 1.09003 * 110.37437 * 142.92709 * 10 9 7 33 33 H 1.09006 * 110.36726 * 265.15377 * 10 9 7 34 34 H 1.08997 * 110.98870 * 81.02353 * 11 10 9 35 35 H 1.08992 * 110.99167 * 204.84542 * 11 10 9 36 36 H 0.96999 * 120.00453 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.61596 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0990 -0.0017 7 6 6.2428 -0.1201 1.4404 8 1 5.8429 0.7333 1.9878 9 7 5.8343 -1.3745 2.0988 10 6 7.0504 -2.1174 2.4926 11 6 8.1519 -1.0354 2.6174 12 6 7.7855 -0.0794 1.4517 13 1 8.1877 -0.4496 0.5087 14 6 8.2795 1.3164 1.7322 15 1 7.5730 2.1177 1.8907 16 6 9.6337 1.5708 1.7853 17 7 10.4941 0.5952 1.5918 18 14 10.2460 3.3011 2.1322 19 1 9.7449 3.7473 3.4570 20 1 11.7310 3.3089 2.1370 21 1 9.7491 4.2225 1.0790 22 6 3.4765 -1.1948 -0.0005 23 7 2.1586 -1.1463 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6508 2.1373 0.0004 28 1 4.1366 2.1138 -0.0050 29 1 6.0566 -1.0038 -0.5154 30 1 6.1330 0.7744 -0.5162 31 1 5.2490 -1.1887 2.8995 32 1 6.8975 -2.6156 3.4500 33 1 7.3158 -2.8448 1.7252 34 1 8.0887 -0.5229 3.5772 35 1 9.1418 -1.4674 2.4714 36 1 11.4467 0.7740 1.6295 37 1 3.9753 -2.1527 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:43 Heat of formation + Delta-G solvation = -0.531398 kcal Electronic energy + Delta-G solvation = -17570.221977 eV Core-core repulsion = 14924.519065 eV Total energy + Delta-G solvation = -2645.702912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16700 -39.43438 -35.12807 -34.62657 -33.09316 -31.49463 -30.79395 -28.62849 -26.80325 -25.10737 -24.20439 -22.50008 -21.57768 -20.57897 -18.86043 -17.46408 -16.96242 -16.76448 -16.48452 -15.91344 -15.84857 -15.22188 -14.45938 -14.15794 -13.99456 -13.90091 -13.73437 -13.33074 -13.13609 -12.99325 -12.92842 -12.72116 -12.50033 -12.44828 -12.10284 -12.01320 -11.53228 -11.12219 -10.91656 -10.58788 -10.50463 -10.24881 -9.57373 -9.20844 -8.14724 -6.24360 0.30787 0.45744 1.40655 1.40769 1.48481 2.41083 2.93780 3.17035 3.46681 3.53771 3.94783 3.99277 4.18680 4.21097 4.29190 4.37772 4.52673 4.65351 4.69814 4.78755 4.82706 4.85542 4.86742 4.92926 5.08955 5.12964 5.25172 5.29700 5.37538 5.39316 5.55790 5.60608 5.73767 5.91197 5.96388 6.09332 6.34851 6.62702 6.86760 7.17692 7.43360 8.94254 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.005637 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.653453 B = 4966.106732 C = 5638.908061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.097 3.903 3 C -0.171 4.171 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.048 4.048 7 C 0.098 3.902 8 H 0.042 0.958 9 N -0.672 5.672 10 C 0.054 3.946 11 C -0.125 4.125 12 C 0.038 3.962 13 H 0.007 0.993 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.113 3.887 23 N -0.511 5.511 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.138 0.862 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.334 0.666 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.383 -0.004 -1.705 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.041 4.041 3 C -0.190 4.190 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.011 4.011 8 H 0.060 0.940 9 N -0.300 5.300 10 C -0.075 4.075 11 C -0.165 4.165 12 C 0.018 3.982 13 H 0.025 0.975 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.043 4.043 23 N -0.220 5.220 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.177 0.823 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.810 -1.194 -2.321 16.024 hybrid contribution 1.980 2.073 0.963 3.024 sum -13.831 0.880 -1.358 13.925 Atomic orbital electron populations 1.20733 0.86848 1.04055 1.03725 1.21828 0.98478 0.88355 0.95430 1.22174 0.94272 1.00107 1.02478 1.21770 0.95156 0.98133 0.96203 1.20874 0.96917 0.94413 1.00465 1.20392 0.89811 1.01892 0.96576 1.22043 0.95131 0.90167 0.93796 0.93984 1.61691 1.17630 1.20051 1.30636 1.22823 0.89078 0.95844 0.99799 1.22882 0.98082 0.96917 0.98625 1.19770 0.90386 0.94201 0.93808 0.97450 1.21408 0.91814 0.94893 1.48644 0.92854 1.25713 0.97290 1.00330 0.95002 1.70072 1.01998 1.33260 1.50396 0.85735 0.76997 0.80779 0.78912 1.19787 1.21195 1.19429 1.22618 0.88720 0.98419 0.94581 1.67554 1.10174 1.30472 1.13850 0.89593 0.91057 0.88802 0.82337 0.84376 0.91502 0.91677 0.85082 0.90780 0.91485 0.94766 0.93817 0.93100 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.17 71.24 0.72 -0.91 16 2 C 0.10 2.44 6.78 42.55 0.29 2.73 16 3 C -0.17 -4.04 9.74 22.36 0.22 -3.82 16 4 C -0.09 -2.42 9.86 22.47 0.22 -2.20 16 5 C -0.12 -3.92 4.99 -19.78 -0.10 -4.02 16 6 C -0.05 -1.71 4.92 29.85 0.15 -1.56 16 7 C 0.10 3.89 2.91 45.26 0.13 4.03 16 8 H 0.04 1.74 7.64 -2.39 -0.02 1.72 16 9 N -0.67 -23.43 6.53 -482.35 -3.15 -26.58 16 10 C 0.05 1.94 7.57 86.77 0.66 2.60 16 11 C -0.13 -5.76 5.94 31.98 0.19 -5.57 16 12 C 0.04 1.84 2.31 -10.36 -0.02 1.81 16 13 H 0.01 0.40 7.85 -2.39 -0.02 0.38 16 14 C -0.53 -28.35 8.47 25.60 0.22 -28.13 16 15 H 0.05 2.80 7.53 -2.91 -0.02 2.77 16 16 C 0.02 0.87 5.36 84.66 0.45 1.32 16 17 N -0.92 -52.82 12.49 21.45 0.27 -52.56 16 18 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 C 0.11 3.52 10.57 84.67 0.89 4.41 16 23 N -0.51 -15.48 10.27 -183.90 -1.89 -17.37 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 30 H 0.06 2.41 8.10 -2.39 -0.02 2.39 16 31 H 0.33 10.76 8.91 -89.69 -0.80 9.96 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.03 1.62 8.04 -2.39 -0.02 1.60 16 35 H 0.04 2.20 7.76 -2.39 -0.02 2.18 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -60.80 306.79 1.52 -59.28 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.25 Total: 21.59 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.02 Total: -29.31 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -4.77 Total: -96.50 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -60.80 1.52 -59.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.750 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds