Wall clock time and date at job start Mon Mar 30 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.63021 * 2 1 4 4 C 1.53308 * 109.78669 * 120.48201 * 2 1 3 5 5 C 1.52816 * 108.48980 * 50.05769 * 4 2 1 6 6 C 1.50339 * 110.46689 * 50.82836 * 5 4 2 7 7 C 1.39081 * 118.70271 * 162.59503 * 6 5 4 8 8 C 1.38050 * 119.32650 * 179.43459 * 7 6 5 9 9 N 1.31893 * 120.59004 * 0.02562 * 8 7 6 10 10 C 1.31670 * 121.64707 * 0.12823 * 9 8 7 11 11 C 1.37836 * 122.80641 * 342.26441 * 6 5 4 12 12 C 1.50463 * 122.52287 * 0.97950 * 11 6 5 13 13 C 1.50700 * 109.30454 * 102.08427 * 12 11 6 14 14 H 1.08002 * 119.99976 * 27.84327 * 13 12 11 15 15 C 1.37883 * 119.99914 * 207.84387 * 13 12 11 16 16 N 1.31512 * 120.00111 * 156.37514 * 15 13 12 17 17 Si 1.82293 * 145.09254 * 224.93810 * 3 2 1 18 18 H 1.48504 * 56.86310 * 209.51520 * 17 3 2 19 19 H 1.48495 * 165.39517 * 187.42372 * 17 3 2 20 20 H 1.48496 * 73.77884 * 82.32304 * 17 3 2 21 21 C 1.52994 * 109.30573 * 221.67849 * 12 11 6 22 22 N 1.46900 * 109.47326 * 292.28616 * 21 12 11 23 23 H 1.08999 * 109.47211 * 180.38213 * 1 2 3 24 24 H 1.08992 * 109.47755 * 300.39460 * 1 2 3 25 25 H 1.09011 * 109.46652 * 60.39357 * 1 2 3 26 26 H 1.09002 * 109.63372 * 169.74906 * 4 2 1 27 27 H 1.09001 * 109.63451 * 290.15184 * 4 2 1 28 28 H 1.09006 * 109.30321 * 290.52645 * 5 4 2 29 29 H 1.09000 * 109.30875 * 171.13586 * 5 4 2 30 30 H 1.07997 * 120.33387 * 359.41620 * 7 6 5 31 31 H 1.07999 * 119.70898 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.49299 * 179.70605 * 10 9 8 33 33 H 0.96993 * 120.00025 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47489 * 52.28697 * 21 12 11 35 35 H 1.09001 * 109.47035 * 172.28436 * 21 12 11 36 36 H 1.00904 * 111.00471 * 184.22960 * 22 21 12 37 37 H 1.00903 * 110.99618 * 308.18194 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0489 -0.7318 1.2432 5 6 1.3375 -2.0804 1.3440 6 6 1.4244 -2.8196 0.0377 7 6 1.1707 -4.1870 0.0258 8 6 1.2355 -4.8763 -1.1685 9 7 1.5348 -4.2497 -2.2898 10 6 1.7834 -2.9569 -2.3135 11 6 1.7387 -2.1988 -1.1521 12 6 2.0433 -0.7280 -1.2414 13 6 3.5340 -0.5336 -1.3473 14 1 4.1490 -1.3037 -1.7891 15 6 4.1127 0.6275 -0.8803 16 7 5.3819 0.6373 -0.5358 17 14 3.0939 2.1867 -0.7368 18 1 2.5844 2.3190 0.6518 19 1 3.9386 3.3621 -1.0684 20 1 1.9488 2.1182 -1.6798 21 6 1.3678 -0.1461 -2.4847 22 7 2.0055 -0.6929 -3.6898 23 1 -0.3633 -1.0276 0.0069 24 1 -0.3634 0.5199 0.8863 25 1 -0.3633 0.5078 -0.8936 26 1 3.1235 -0.8906 1.1528 27 1 1.8401 -0.1367 2.1323 28 1 0.2897 -1.9171 1.5965 29 1 1.8051 -2.6770 2.1273 30 1 0.9259 -4.7043 0.9417 31 1 1.0392 -5.9382 -1.1850 32 1 2.0297 -2.4799 -3.2507 33 1 5.7888 1.4540 -0.2069 34 1 0.3104 -0.4109 -2.4812 35 1 1.4705 0.9390 -2.4797 36 1 1.6236 -0.2721 -4.5236 37 1 3.0072 -0.5774 -3.6528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260390830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:22 Heat of formation + Delta-G solvation = 52.981439 kcal Electronic energy + Delta-G solvation = -19273.116444 eV Core-core repulsion = 16629.734023 eV Total energy + Delta-G solvation = -2643.382421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33980 -37.45290 -34.60456 -32.41245 -31.56329 -30.31578 -29.17217 -27.36360 -24.37467 -24.01152 -22.63145 -21.94259 -20.30034 -18.46108 -16.46963 -15.72820 -15.62302 -15.35111 -14.95506 -14.42091 -13.88294 -13.72984 -13.28121 -13.08214 -12.81333 -12.59465 -12.23369 -12.02549 -11.76664 -11.50641 -11.28615 -11.12754 -10.83646 -10.38419 -10.25023 -10.14387 -9.69316 -9.35673 -9.05151 -8.57926 -8.47343 -8.34760 -7.86337 -7.58811 -6.30437 -4.19404 2.03637 2.15763 3.11178 3.19569 3.29768 4.22178 4.67369 4.98607 5.26419 5.26941 5.31255 5.56653 5.62860 5.70558 5.78901 5.85485 5.91218 6.05646 6.10501 6.20400 6.28468 6.34241 6.41153 6.43527 6.53721 6.60751 6.64781 6.81689 6.88295 7.00044 7.09457 7.19298 7.44419 7.62946 7.75555 7.95295 8.27902 8.37829 8.83441 8.90689 9.36726 10.80410 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.011541 C = 0.010303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.817443 B = 2425.574227 C = 2717.117416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.074 4.074 6 C -0.050 4.050 7 C -0.190 4.190 8 C 0.060 3.940 9 N -0.502 5.502 10 C 0.090 3.910 11 C -0.066 4.066 12 C 0.093 3.907 13 C -0.515 4.515 14 H 0.078 0.922 15 C 0.085 3.915 16 N -0.871 5.871 17 Si 0.866 3.134 18 H -0.281 1.281 19 H -0.305 1.305 20 H -0.248 1.248 21 C 0.051 3.949 22 N -0.839 5.839 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.203 0.797 33 H 0.265 0.735 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.321 0.679 37 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -1.842 1.148 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.146 4.146 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.210 4.210 8 C -0.095 4.095 9 N -0.211 5.211 10 C -0.068 4.068 11 C -0.068 4.068 12 C 0.091 3.909 13 C -0.552 4.552 14 H 0.096 0.904 15 C -0.119 4.119 16 N -0.505 5.505 17 Si 0.699 3.301 18 H -0.210 1.210 19 H -0.234 1.234 20 H -0.174 1.174 21 C -0.079 4.079 22 N -0.371 5.371 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.751 -2.940 0.686 9.257 hybrid contribution -0.145 2.285 1.062 2.524 sum -8.897 -0.654 1.748 9.091 Atomic orbital electron populations 1.22020 0.96888 1.01551 1.00533 1.21449 0.93743 0.98909 0.96843 0.92381 1.21502 1.02568 0.94157 0.96357 1.20390 1.00374 0.96475 0.93838 1.19827 0.97137 0.93326 0.95444 1.21881 1.05212 0.94799 0.99138 1.22427 0.98801 0.99399 0.88829 1.67770 1.12333 1.11574 1.29446 1.24687 0.92666 0.88013 1.01436 1.20681 0.95298 0.98235 0.92548 1.17377 0.96365 0.87091 0.90023 1.20623 0.88569 1.04110 1.41879 0.90387 1.24975 0.94622 0.98724 0.93611 1.70054 1.12981 1.27966 1.39523 0.87442 0.80624 0.83496 0.78519 1.20952 1.23381 1.17388 1.22482 0.96306 0.97310 0.91815 1.58731 1.12026 1.62554 1.03745 0.92376 0.93774 0.93036 0.89150 0.93225 0.91359 0.91604 0.86529 0.84604 0.78159 0.92469 0.93557 0.94339 0.86779 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 7.89 37.16 0.29 -2.36 16 2 C -0.09 -1.86 1.61 -90.57 -0.15 -2.01 16 3 H 0.06 1.28 1.36 -51.93 -0.07 1.21 16 4 C -0.11 -2.14 5.52 -26.67 -0.15 -2.29 16 5 C -0.07 -1.28 5.11 -28.15 -0.14 -1.42 16 6 C -0.05 -0.96 5.02 -104.63 -0.53 -1.49 16 7 C -0.19 -3.34 9.74 -39.34 -0.38 -3.72 16 8 C 0.06 1.09 11.19 -17.59 -0.20 0.89 16 9 N -0.50 -10.30 10.36 -13.19 -0.14 -10.44 16 10 C 0.09 1.90 10.10 -17.43 -0.18 1.72 16 11 C -0.07 -1.38 4.23 -104.69 -0.44 -1.82 16 12 C 0.09 1.99 0.08 -157.03 -0.01 1.98 16 13 C -0.51 -12.85 5.98 -34.44 -0.21 -13.05 16 14 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 15 C 0.09 2.21 4.74 -17.82 -0.08 2.12 16 16 N -0.87 -24.37 13.96 55.43 0.77 -23.60 16 17 Si 0.87 19.83 23.90 -169.99 -4.06 15.76 16 18 H -0.28 -6.41 6.71 56.52 0.38 -6.03 16 19 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.25 -5.26 4.48 56.52 0.25 -5.00 16 21 C 0.05 1.00 4.41 -3.83 -0.02 0.98 16 22 N -0.84 -14.89 6.26 -10.37 -0.06 -14.95 16 23 H 0.06 0.99 5.58 -51.93 -0.29 0.70 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.86 6.51 -51.92 -0.34 0.52 16 26 H 0.09 2.08 6.87 -51.93 -0.36 1.72 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.05 6.84 -51.93 -0.36 0.70 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.20 4.16 4.70 -52.49 -0.25 3.92 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 34 H 0.05 0.86 6.86 -51.93 -0.36 0.51 16 35 H 0.04 0.78 4.54 -51.93 -0.24 0.55 16 36 H 0.32 4.75 9.08 -39.29 -0.36 4.39 16 37 H 0.36 6.87 7.44 -39.29 -0.29 6.57 16 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -27.70 265.08 -6.42 -34.12 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -4.74 Total: 15.58 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.19 Total: -20.47 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.57 Total: -48.99 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.06 Total: 15.76 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.70 -6.42 -34.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260390830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.103 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds