Wall clock time and date at job start Mon Mar 30 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.63021 * 2 1 4 4 C 1.53308 * 109.78669 * 120.48201 * 2 1 3 5 5 C 1.52816 * 108.48980 * 50.05769 * 4 2 1 6 6 C 1.50339 * 110.46689 * 50.82836 * 5 4 2 7 7 C 1.39081 * 118.70271 * 162.59503 * 6 5 4 8 8 C 1.38050 * 119.32650 * 179.43459 * 7 6 5 9 9 N 1.31893 * 120.59004 * 0.02562 * 8 7 6 10 10 C 1.31670 * 121.64707 * 0.12823 * 9 8 7 11 11 C 1.37836 * 122.80641 * 342.26441 * 6 5 4 12 12 C 1.50463 * 122.52287 * 0.97950 * 11 6 5 13 13 C 1.50700 * 109.30454 * 102.08427 * 12 11 6 14 14 H 1.08002 * 119.99976 * 27.84327 * 13 12 11 15 15 C 1.37883 * 119.99914 * 207.84387 * 13 12 11 16 16 N 1.31512 * 120.00111 * 156.37514 * 15 13 12 17 17 Si 1.82293 * 145.09254 * 224.93810 * 3 2 1 18 18 H 1.48504 * 56.86310 * 209.51520 * 17 3 2 19 19 H 1.48495 * 165.39517 * 187.42372 * 17 3 2 20 20 H 1.48496 * 73.77884 * 82.32304 * 17 3 2 21 21 C 1.52994 * 109.30573 * 221.67849 * 12 11 6 22 22 N 1.46900 * 109.47326 * 292.28616 * 21 12 11 23 23 H 1.08999 * 109.47211 * 180.38213 * 1 2 3 24 24 H 1.08992 * 109.47755 * 300.39460 * 1 2 3 25 25 H 1.09011 * 109.46652 * 60.39357 * 1 2 3 26 26 H 1.09002 * 109.63372 * 169.74906 * 4 2 1 27 27 H 1.09001 * 109.63451 * 290.15184 * 4 2 1 28 28 H 1.09006 * 109.30321 * 290.52645 * 5 4 2 29 29 H 1.09000 * 109.30875 * 171.13586 * 5 4 2 30 30 H 1.07997 * 120.33387 * 359.41620 * 7 6 5 31 31 H 1.07999 * 119.70898 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.49299 * 179.70605 * 10 9 8 33 33 H 0.96993 * 120.00025 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47489 * 52.28697 * 21 12 11 35 35 H 1.09001 * 109.47035 * 172.28436 * 21 12 11 36 36 H 1.00904 * 111.00471 * 184.22960 * 22 21 12 37 37 H 1.00903 * 110.99618 * 308.18194 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0489 -0.7318 1.2432 5 6 1.3375 -2.0804 1.3440 6 6 1.4244 -2.8196 0.0377 7 6 1.1707 -4.1870 0.0258 8 6 1.2355 -4.8763 -1.1685 9 7 1.5348 -4.2497 -2.2898 10 6 1.7834 -2.9569 -2.3135 11 6 1.7387 -2.1988 -1.1521 12 6 2.0433 -0.7280 -1.2414 13 6 3.5340 -0.5336 -1.3473 14 1 4.1490 -1.3037 -1.7891 15 6 4.1127 0.6275 -0.8803 16 7 5.3819 0.6373 -0.5358 17 14 3.0939 2.1867 -0.7368 18 1 2.5844 2.3190 0.6518 19 1 3.9386 3.3621 -1.0684 20 1 1.9488 2.1182 -1.6798 21 6 1.3678 -0.1461 -2.4847 22 7 2.0055 -0.6929 -3.6898 23 1 -0.3633 -1.0276 0.0069 24 1 -0.3634 0.5199 0.8863 25 1 -0.3633 0.5078 -0.8936 26 1 3.1235 -0.8906 1.1528 27 1 1.8401 -0.1367 2.1323 28 1 0.2897 -1.9171 1.5965 29 1 1.8051 -2.6770 2.1273 30 1 0.9259 -4.7043 0.9417 31 1 1.0392 -5.9382 -1.1850 32 1 2.0297 -2.4799 -3.2507 33 1 5.7888 1.4540 -0.2069 34 1 0.3104 -0.4109 -2.4812 35 1 1.4705 0.9390 -2.4797 36 1 1.6236 -0.2721 -4.5236 37 1 3.0072 -0.5774 -3.6528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260390830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:22 Heat of formation + Delta-G solvation = 33.813220 kcal Electronic energy + Delta-G solvation = -19273.947641 eV Core-core repulsion = 16629.734023 eV Total energy + Delta-G solvation = -2644.213617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.85591 -38.98393 -36.11274 -34.32824 -33.06519 -31.81628 -30.65692 -28.97426 -25.89516 -25.74025 -24.12824 -23.44504 -21.89650 -20.09301 -18.16698 -17.43261 -17.14260 -16.89532 -16.43122 -15.98222 -15.46019 -15.21911 -14.83308 -14.75846 -14.33189 -14.27041 -13.67938 -13.52187 -13.33300 -12.97391 -12.80125 -12.62470 -12.51622 -12.03312 -11.87344 -11.80407 -11.28727 -11.05941 -10.67763 -10.39942 -10.00985 -9.89595 -9.41396 -9.08945 -8.31617 -6.21958 0.56973 0.66484 1.27425 1.34625 1.45254 2.30563 2.97828 3.24030 3.77104 3.84566 3.88519 4.12098 4.15689 4.29785 4.33790 4.45412 4.51505 4.64970 4.72768 4.75137 4.78454 4.85566 4.97062 5.00137 5.05914 5.15082 5.21986 5.28864 5.42066 5.47531 5.54976 5.62358 5.78893 5.93602 6.23581 6.33021 6.51561 6.74125 6.91775 7.35925 7.42093 8.83264 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.011541 C = 0.010303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.817443 B = 2425.574227 C = 2717.117416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.043 0.957 4 C -0.109 4.109 5 C -0.069 4.069 6 C -0.061 4.061 7 C -0.185 4.185 8 C 0.056 3.944 9 N -0.523 5.523 10 C 0.070 3.930 11 C -0.091 4.091 12 C 0.094 3.906 13 C -0.498 4.498 14 H 0.030 0.970 15 C 0.040 3.960 16 N -0.925 5.925 17 Si 0.920 3.080 18 H -0.276 1.276 19 H -0.320 1.320 20 H -0.218 1.218 21 C 0.058 3.942 22 N -0.838 5.838 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.197 0.803 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.340 0.660 37 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 -2.384 2.136 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.060 0.940 4 C -0.147 4.147 5 C -0.105 4.105 6 C -0.069 4.069 7 C -0.204 4.204 8 C -0.099 4.099 9 N -0.232 5.232 10 C -0.087 4.087 11 C -0.093 4.093 12 C 0.092 3.908 13 C -0.536 4.536 14 H 0.048 0.952 15 C -0.160 4.160 16 N -0.562 5.562 17 Si 0.752 3.248 18 H -0.204 1.204 19 H -0.251 1.251 20 H -0.143 1.143 21 C -0.072 4.072 22 N -0.369 5.369 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.173 0.827 31 H 0.188 0.812 32 H 0.213 0.787 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.153 0.847 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.824 -3.487 1.648 12.437 hybrid contribution 0.840 2.274 0.743 2.536 sum -10.984 -1.212 2.390 11.306 Atomic orbital electron populations 1.21959 0.93943 1.02386 1.02045 1.21482 0.96239 0.97614 0.96385 0.93964 1.21444 1.00052 0.96154 0.97006 1.20421 1.01929 0.94908 0.93258 1.20207 0.96560 0.94535 0.95620 1.22260 1.03640 0.94041 1.00479 1.23067 0.97379 1.01022 0.88397 1.67767 1.13132 1.11330 1.31012 1.24677 0.93709 0.88663 1.01650 1.20697 0.97115 0.97943 0.93517 1.17317 0.93652 0.88217 0.91602 1.20664 0.90588 1.02321 1.40016 0.95207 1.25604 0.95289 1.01522 0.93564 1.70183 1.15199 1.28537 1.42324 0.86574 0.79799 0.79090 0.79357 1.20414 1.25076 1.14306 1.22366 0.96917 0.96573 0.91384 1.58649 1.11243 1.62730 1.04277 0.91819 0.91507 0.92382 0.93655 0.91385 0.88356 0.89880 0.82730 0.81155 0.78744 0.92788 0.92082 0.94973 0.84728 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 7.89 71.98 0.57 -3.93 16 2 C -0.10 -3.84 1.61 -10.76 -0.02 -3.86 16 3 H 0.04 1.78 1.36 -2.38 0.00 1.78 16 4 C -0.11 -4.12 5.52 30.64 0.17 -3.95 16 5 C -0.07 -2.15 5.11 29.67 0.15 -2.00 16 6 C -0.06 -2.23 5.02 -19.87 -0.10 -2.33 16 7 C -0.18 -5.82 9.74 22.43 0.22 -5.60 16 8 C 0.06 1.87 11.19 84.64 0.95 2.82 16 9 N -0.52 -20.81 10.36 -195.64 -2.03 -22.84 16 10 C 0.07 2.95 10.10 84.84 0.86 3.80 16 11 C -0.09 -3.74 4.23 -19.91 -0.08 -3.82 16 12 C 0.09 3.95 0.08 -53.82 0.00 3.94 16 13 C -0.50 -25.73 5.98 25.60 0.15 -25.58 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 15 C 0.04 2.14 4.74 84.66 0.40 2.54 16 16 N -0.92 -54.36 13.96 21.45 0.30 -54.06 16 17 Si 0.92 41.27 23.90 68.60 1.64 42.91 16 18 H -0.28 -12.05 6.71 99.48 0.67 -11.39 16 19 H -0.32 -15.08 7.11 99.48 0.71 -14.37 16 20 H -0.22 -8.67 4.48 99.48 0.45 -8.23 16 21 C 0.06 2.18 4.41 86.30 0.38 2.56 16 22 N -0.84 -29.47 6.26 -186.72 -1.17 -30.64 16 23 H 0.06 1.89 5.58 -2.39 -0.01 1.88 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.70 6.51 -2.38 -0.02 1.69 16 26 H 0.04 2.11 6.87 -2.39 -0.02 2.09 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.10 2.54 6.84 -2.38 -0.02 2.52 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.20 8.19 4.70 -2.91 -0.01 8.17 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.06 2.13 6.86 -2.39 -0.02 2.11 16 35 H 0.03 1.24 4.54 -2.39 -0.01 1.23 16 36 H 0.34 9.68 9.08 -89.69 -0.81 8.86 16 37 H 0.35 13.72 7.44 -89.69 -0.67 13.05 16 Total: -1.00 -62.43 265.08 1.72 -60.71 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.67 Total: 39.33 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.64 Total: -35.41 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -2.90 Total: -107.54 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.64 Total: 42.91 kcal Total: -62.43 1.72 -60.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260390830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.527 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds