Wall clock time and date at job start Mon Mar 30 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.62384 * 2 1 4 4 C 1.53311 * 109.63065 * 120.37954 * 2 1 3 5 5 C 1.52831 * 108.46879 * 49.96109 * 4 2 1 6 6 C 1.50338 * 110.44770 * 50.91574 * 5 4 2 7 7 C 1.39072 * 118.69763 * 162.45948 * 6 5 4 8 8 C 1.38061 * 119.32445 * 179.48966 * 7 6 5 9 9 N 1.31888 * 120.58677 * 359.72417 * 8 7 6 10 10 C 1.31674 * 121.64883 * 0.65978 * 9 8 7 11 11 C 1.37836 * 122.80702 * 342.16429 * 6 5 4 12 12 C 1.50464 * 122.52162 * 0.99341 * 11 6 5 13 13 C 1.50701 * 109.30139 * 221.74960 * 12 11 6 14 14 H 1.08001 * 119.99968 * 358.51065 * 13 12 11 15 15 C 1.37879 * 119.99819 * 178.50388 * 13 12 11 16 16 N 1.31516 * 120.00114 * 6.24174 * 15 13 12 17 17 Si 1.86802 * 119.99835 * 186.23735 * 15 13 12 18 18 H 1.48501 * 109.47360 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47028 * 120.00300 * 17 15 13 20 20 H 1.48508 * 109.47070 * 239.99943 * 17 15 13 21 21 C 1.53003 * 109.30397 * 102.37024 * 12 11 6 22 22 N 1.46902 * 109.47400 * 65.54355 * 21 12 11 23 23 H 1.09003 * 109.47393 * 299.61612 * 1 2 3 24 24 H 1.08999 * 109.47733 * 59.61878 * 1 2 3 25 25 H 1.09003 * 109.47346 * 179.61941 * 1 2 3 26 26 H 1.09001 * 109.63550 * 290.27215 * 4 2 1 27 27 H 1.08997 * 109.80393 * 169.75768 * 4 2 1 28 28 H 1.09000 * 109.31230 * 290.61105 * 5 4 2 29 29 H 1.09006 * 109.14228 * 171.10918 * 5 4 2 30 30 H 1.07995 * 120.34142 * 359.51382 * 7 6 5 31 31 H 1.08005 * 119.70619 * 179.97438 * 8 7 6 32 32 H 1.08000 * 119.49505 * 179.75298 * 10 9 8 33 33 H 0.96999 * 119.99860 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47154 * 185.55034 * 21 12 11 35 35 H 1.09004 * 109.46826 * 305.54197 * 21 12 11 36 36 H 1.00899 * 110.99636 * 172.89785 * 22 21 12 37 37 H 1.00896 * 111.00014 * 296.85548 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0450 -0.7303 1.2457 5 6 1.3293 -2.0768 1.3481 6 6 1.4184 -2.8194 0.0440 7 6 1.1638 -4.1866 0.0354 8 6 1.2315 -4.8795 -1.1569 9 7 1.5288 -4.2551 -2.2799 10 6 1.7826 -2.9633 -2.3060 11 6 1.7362 -2.2021 -1.1467 12 6 2.0432 -0.7321 -1.2391 13 6 1.3798 -0.1608 -2.4657 14 1 0.8156 -0.8048 -3.1240 15 6 1.4929 1.1842 -2.7474 16 7 2.2784 1.9453 -2.0171 17 14 0.5304 1.9253 -4.1665 18 1 -0.2732 0.8654 -4.8268 19 1 -0.3740 2.9846 -3.6515 20 1 1.4740 2.5153 -5.1499 21 6 3.5566 -0.5374 -1.3509 22 7 4.0308 -1.1044 -2.6205 23 1 -0.3634 0.5079 0.8934 24 1 -0.3634 0.5197 -0.8865 25 1 -0.3634 -1.0276 -0.0068 26 1 1.8330 -0.1344 2.1335 27 1 3.1195 -0.8920 1.1611 28 1 0.2813 -1.9100 1.5971 29 1 1.7962 -2.6709 2.1338 30 1 0.9152 -4.7010 0.9518 31 1 1.0354 -5.9415 -1.1706 32 1 2.0263 -2.4881 -3.2447 33 1 2.3576 2.8915 -2.2150 34 1 3.7895 0.5269 -1.3188 35 1 4.0502 -1.0425 -0.5206 36 1 5.0045 -0.8875 -2.7720 37 1 3.8727 -2.1004 -2.6531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:23 Heat of formation + Delta-G solvation = 13.280913 kcal Electronic energy + Delta-G solvation = -19149.540803 eV Core-core repulsion = 16504.436838 eV Total energy + Delta-G solvation = -2645.103965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75922 -38.73421 -35.89912 -33.94479 -32.85698 -31.90169 -30.33746 -28.30267 -26.81628 -24.98437 -24.05224 -23.05155 -22.07825 -19.13154 -18.14848 -17.29224 -17.21397 -16.56879 -16.09683 -15.99790 -15.34132 -15.16079 -14.56577 -14.42041 -14.05852 -13.96895 -13.69324 -13.33104 -13.06018 -12.89583 -12.69657 -12.49554 -12.26919 -12.06594 -11.81962 -11.48487 -11.25988 -10.98374 -10.60821 -10.25038 -10.04770 -9.92165 -9.55303 -8.99707 -7.85711 -5.88489 0.45027 0.60202 1.42193 1.48489 1.55213 2.56074 3.09742 3.41985 3.81424 3.91178 4.02205 4.17173 4.31658 4.38107 4.45796 4.52067 4.67675 4.74738 4.83932 4.90674 4.95915 5.03291 5.11450 5.14329 5.23986 5.28026 5.41069 5.45145 5.57559 5.78586 5.85429 5.94339 5.98284 6.06231 6.32413 6.49039 6.79534 6.93682 7.06486 7.29109 7.71578 9.15079 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.010603 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.825275 B = 2640.104089 C = 2986.303376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.060 4.060 7 C -0.174 4.174 8 C 0.062 3.938 9 N -0.517 5.517 10 C 0.088 3.912 11 C -0.097 4.097 12 C 0.115 3.885 13 C -0.464 4.464 14 H 0.033 0.967 15 C 0.043 3.957 16 N -0.900 5.900 17 Si 0.921 3.079 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.292 1.292 21 C 0.092 3.908 22 N -0.833 5.833 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.079 0.921 35 H -0.017 1.017 36 H 0.328 0.672 37 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -8.118 7.999 11.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.109 4.109 6 C -0.068 4.068 7 C -0.194 4.194 8 C -0.094 4.094 9 N -0.227 5.227 10 C -0.069 4.069 11 C -0.099 4.099 12 C 0.114 3.886 13 C -0.502 4.502 14 H 0.052 0.948 15 C -0.156 4.156 16 N -0.541 5.541 17 Si 0.751 3.249 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.219 1.219 21 C -0.039 4.039 22 N -0.363 5.363 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.179 0.821 31 H 0.194 0.806 32 H 0.162 0.838 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.001 0.999 36 H 0.139 0.861 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.795 -7.942 6.885 10.541 hybrid contribution 0.211 0.754 0.029 0.783 sum -0.585 -7.188 6.914 9.991 Atomic orbital electron populations 1.21566 0.96428 0.99740 0.99562 1.20991 0.94979 1.00279 0.93452 0.91213 1.21695 0.99210 0.96024 0.98513 1.20477 1.02001 0.95515 0.92929 1.20287 0.96340 0.94469 0.95745 1.22355 1.02384 0.93944 1.00683 1.23081 0.97212 1.01163 0.87938 1.67619 1.12849 1.10921 1.31301 1.22894 0.96266 0.88966 0.98799 1.21054 0.97183 0.98567 0.93077 1.17066 0.91812 0.85542 0.94167 1.20843 1.29567 0.92548 1.07285 0.94825 1.25058 0.95753 0.97646 0.97104 1.69863 1.38119 1.05407 1.40689 0.86087 0.79042 0.78323 0.81458 1.20635 1.21374 1.21855 1.21745 0.95929 0.99679 0.86540 1.58610 1.22906 1.16842 1.37904 0.93704 0.94690 0.94101 0.90992 0.93155 0.89523 0.88902 0.82148 0.80616 0.83797 0.93820 0.90323 0.99918 0.86061 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.03 71.98 0.58 -4.06 16 2 C -0.08 -3.22 1.91 -10.76 -0.02 -3.24 16 3 H 0.07 3.34 6.35 -2.39 -0.02 3.32 16 4 C -0.12 -3.87 5.59 30.64 0.17 -3.70 16 5 C -0.07 -2.07 5.11 29.68 0.15 -1.92 16 6 C -0.06 -2.04 5.01 -19.87 -0.10 -2.14 16 7 C -0.17 -4.93 9.74 22.43 0.22 -4.71 16 8 C 0.06 1.87 11.19 84.64 0.95 2.81 16 9 N -0.52 -19.56 10.36 -195.63 -2.03 -21.59 16 10 C 0.09 3.63 7.99 84.84 0.68 4.31 16 11 C -0.10 -3.91 4.15 -19.91 -0.08 -3.99 16 12 C 0.12 5.10 0.07 -53.82 0.00 5.10 16 13 C -0.46 -23.56 5.18 25.60 0.13 -23.43 16 14 H 0.03 1.82 6.65 -2.91 -0.02 1.80 16 15 C 0.04 2.23 4.75 84.65 0.40 2.63 16 16 N -0.90 -47.44 9.51 21.45 0.20 -47.23 16 17 Si 0.92 43.69 29.54 68.60 2.03 45.72 16 18 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 21 C 0.09 4.06 5.09 86.30 0.44 4.50 16 22 N -0.83 -34.67 8.51 -186.70 -1.59 -36.26 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.03 1.59 6.75 -2.39 -0.02 1.57 16 25 H 0.04 1.56 5.58 -2.39 -0.01 1.54 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.73 6.42 -2.39 -0.02 1.71 16 28 H 0.09 2.32 6.84 -2.39 -0.02 2.30 16 29 H 0.09 2.09 8.14 -2.38 -0.02 2.08 16 30 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.14 6.52 6.11 -2.91 -0.02 6.50 16 33 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 34 H 0.08 3.94 6.12 -2.39 -0.01 3.92 16 35 H -0.02 -0.72 6.72 -2.38 -0.02 -0.73 16 36 H 0.33 12.13 9.08 -89.69 -0.81 11.32 16 37 H 0.32 12.85 6.29 -89.70 -0.56 12.29 16 Total: -1.00 -57.20 274.81 1.85 -55.35 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.28 Total: 31.85 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.51 Total: -27.84 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.41 Total: -105.08 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -57.20 1.85 -55.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.633 kcal (2) G-P(sol) polarization free energy of solvation -57.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds