Wall clock time and date at job start Mon Mar 30 2020 04:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.79114 * 2 1 4 4 C 1.53316 * 109.62898 * 239.50790 * 2 1 3 5 5 C 1.52829 * 108.64527 * 170.60070 * 4 2 1 6 6 C 1.50336 * 110.46718 * 50.69383 * 5 4 2 7 7 C 1.39076 * 118.70267 * 162.52685 * 6 5 4 8 8 C 1.38052 * 119.33578 * 179.79565 * 7 6 5 9 9 N 1.31892 * 120.58372 * 359.94259 * 8 7 6 10 10 C 1.31672 * 121.64692 * 0.13150 * 9 8 7 11 11 C 1.37839 * 122.81200 * 342.48233 * 6 5 4 12 12 C 1.50464 * 122.52967 * 0.65493 * 11 6 5 13 13 C 1.50691 * 109.30705 * 102.29581 * 12 11 6 14 14 H 1.08003 * 120.00179 * 155.28271 * 13 12 11 15 15 C 1.37875 * 120.00252 * 335.28738 * 13 12 11 16 16 N 1.31518 * 119.99880 * 345.51431 * 15 13 12 17 17 Si 1.86800 * 120.00297 * 165.51431 * 15 13 12 18 18 H 1.48504 * 109.46890 * 89.99888 * 17 15 13 19 19 H 1.48495 * 109.47241 * 209.99967 * 17 15 13 20 20 H 1.48505 * 109.47196 * 330.00197 * 17 15 13 21 21 C 1.53002 * 109.30539 * 221.89488 * 12 11 6 22 22 N 1.46899 * 109.47301 * 57.90100 * 21 12 11 23 23 H 1.09001 * 109.47290 * 180.48706 * 1 2 3 24 24 H 1.09001 * 109.47156 * 300.48916 * 1 2 3 25 25 H 1.08999 * 109.46811 * 60.49350 * 1 2 3 26 26 H 1.08998 * 109.63262 * 50.80383 * 4 2 1 27 27 H 1.08997 * 109.63511 * 290.39886 * 4 2 1 28 28 H 1.09004 * 109.29746 * 170.99947 * 5 4 2 29 29 H 1.09001 * 109.30607 * 290.58622 * 5 4 2 30 30 H 1.08006 * 120.33364 * 359.75666 * 7 6 5 31 31 H 1.07991 * 119.71031 * 179.97438 * 8 7 6 32 32 H 1.07997 * 119.49317 * 180.02562 * 10 9 8 33 33 H 0.96995 * 119.99863 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47077 * 177.90266 * 21 12 11 35 35 H 1.09002 * 109.47328 * 297.90223 * 21 12 11 36 36 H 1.00899 * 110.99897 * 65.60524 * 22 21 12 37 37 H 1.00901 * 111.00252 * 189.55974 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0450 -0.7327 -1.2444 5 6 3.5548 -0.5190 -1.3474 6 6 4.2228 -0.8494 -0.0418 7 6 5.5952 -1.0742 -0.0318 8 6 6.2228 -1.3744 1.1607 9 7 5.5327 -1.4476 2.2823 10 6 4.2324 -1.2420 2.3081 11 6 3.5333 -0.9388 1.1485 12 6 2.0466 -0.7265 1.2402 13 6 1.3582 -2.0627 1.3471 14 1 0.3844 -2.1331 1.8090 15 6 1.9714 -3.1955 0.8555 16 7 3.0056 -3.0865 0.0503 17 14 1.3334 -4.8850 1.3329 18 1 0.3034 -5.3196 0.3553 19 1 2.4566 -5.8564 1.3332 20 1 0.7329 -4.8222 2.6897 21 6 1.7303 0.1065 2.4840 22 7 2.4476 1.3864 2.4116 23 1 -0.3634 -1.0276 0.0087 24 1 -0.3633 0.5214 0.8856 25 1 -0.3633 0.5062 -0.8944 26 1 1.5570 -0.3328 -2.1331 27 1 1.8310 -1.7979 -1.1570 28 1 3.9569 -1.1614 -2.1308 29 1 3.7550 0.5229 -1.5977 30 1 6.1643 -1.0151 -0.9478 31 1 7.2881 -1.5505 1.1753 32 1 3.7019 -1.3102 3.2463 33 1 3.4373 -3.8834 -0.2953 34 1 0.6576 0.2934 2.5329 35 1 2.0454 -0.4367 3.3749 36 1 2.1077 1.9485 1.6457 37 1 2.3821 1.8875 3.2849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:25 Heat of formation + Delta-G solvation = 17.553543 kcal Electronic energy + Delta-G solvation = -19423.681265 eV Core-core repulsion = 16778.762576 eV Total energy + Delta-G solvation = -2644.918690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38946 -38.55590 -35.40608 -34.29040 -32.97512 -31.68747 -30.44713 -28.17035 -26.00741 -25.28222 -24.05553 -22.64226 -21.47575 -20.02145 -17.88889 -17.35706 -16.81123 -16.49011 -16.19142 -15.80031 -15.13066 -14.95540 -14.59307 -14.31860 -14.09113 -13.71718 -13.66932 -13.20979 -13.02905 -12.85175 -12.56034 -12.52192 -12.30957 -11.95025 -11.88522 -11.64927 -11.14247 -10.77135 -10.52974 -10.22372 -9.72578 -9.69235 -9.27792 -9.13853 -7.73667 -6.02911 0.90303 1.16263 1.39975 1.47802 1.51200 2.48280 3.24547 3.54411 3.99407 4.06981 4.19224 4.31132 4.41568 4.55498 4.59423 4.72630 4.78374 4.84020 4.90595 5.01312 5.10773 5.16226 5.21125 5.29444 5.35843 5.44808 5.56294 5.60717 5.71685 5.79517 5.83420 5.97927 6.18601 6.36427 6.37284 6.52983 6.58233 6.86078 6.97393 7.56770 7.63867 8.96369 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.014444 C = 0.011516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.775194 B = 1938.013348 C = 2430.832634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.046 0.954 4 C -0.106 4.106 5 C -0.053 4.053 6 C 0.005 3.995 7 C -0.196 4.196 8 C 0.041 3.959 9 N -0.528 5.528 10 C 0.067 3.933 11 C 0.016 3.984 12 C 0.101 3.899 13 C -0.511 4.511 14 H 0.053 0.947 15 C 0.042 3.958 16 N -0.863 5.863 17 Si 0.919 3.081 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.277 1.277 21 C 0.079 3.921 22 N -0.851 5.851 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.249 0.751 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.339 0.661 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 6.971 -1.943 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.004 4.004 7 C -0.216 4.216 8 C -0.116 4.116 9 N -0.238 5.238 10 C -0.089 4.089 11 C 0.014 3.986 12 C 0.100 3.900 13 C -0.550 4.550 14 H 0.071 0.929 15 C -0.160 4.160 16 N -0.500 5.500 17 Si 0.748 3.252 18 H -0.207 1.207 19 H -0.228 1.228 20 H -0.202 1.202 21 C -0.051 4.051 22 N -0.382 5.382 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.171 0.829 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.047 6.189 -1.393 6.344 hybrid contribution -1.516 -0.961 -0.227 1.809 sum -1.468 5.228 -1.620 5.667 Atomic orbital electron populations 1.21653 0.95614 1.01196 0.99749 1.21115 0.95212 0.96487 0.96060 0.93617 1.21568 0.93692 1.03113 0.95922 1.20121 0.96323 0.99144 0.93403 1.19596 0.92492 0.93105 0.95169 1.21988 0.95460 1.04965 0.99183 1.22460 0.99844 1.00677 0.88604 1.67310 1.09466 1.15817 1.31184 1.22206 0.89634 0.99112 0.97941 1.19907 0.96255 0.90765 0.91703 1.17276 0.88188 0.93077 0.91477 1.21015 1.03659 0.91569 1.38727 0.92864 1.25251 0.95538 1.00343 0.94854 1.70234 1.22155 1.27687 1.29905 0.86178 0.77450 0.82868 0.78724 1.20687 1.22756 1.20196 1.21856 0.94424 0.90150 0.98699 1.58698 1.63456 1.06933 1.09082 0.93391 0.93659 0.93291 0.93745 0.90264 0.92375 0.91658 0.85175 0.82943 0.86288 0.93999 0.95727 0.93274 0.84710 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.63 71.98 0.62 -3.68 16 2 C -0.07 -2.63 1.87 -10.78 -0.02 -2.65 16 3 H 0.05 1.63 6.44 -2.39 -0.02 1.61 16 4 C -0.11 -4.16 4.94 30.64 0.15 -4.01 16 5 C -0.05 -2.02 5.48 29.68 0.16 -1.86 16 6 C 0.00 0.20 3.93 -19.87 -0.08 0.12 16 7 C -0.20 -7.92 9.74 22.43 0.22 -7.70 16 8 C 0.04 1.69 11.19 84.64 0.95 2.64 16 9 N -0.53 -24.62 10.36 -195.65 -2.03 -26.65 16 10 C 0.07 3.18 10.13 84.84 0.86 4.04 16 11 C 0.02 0.73 2.36 -19.91 -0.05 0.68 16 12 C 0.10 4.25 0.21 -53.84 -0.01 4.24 16 13 C -0.51 -24.24 5.88 25.60 0.15 -24.09 16 14 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 15 C 0.04 2.06 4.50 84.65 0.38 2.44 16 16 N -0.86 -43.33 7.26 21.45 0.16 -43.17 16 17 Si 0.92 41.72 29.56 68.60 2.03 43.75 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C 0.08 2.95 5.06 86.30 0.44 3.39 16 22 N -0.85 -27.13 8.95 -186.72 -1.67 -28.80 16 23 H 0.05 1.85 6.84 -2.39 -0.02 1.83 16 24 H 0.04 1.44 6.69 -2.39 -0.02 1.42 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.08 3.68 4.99 -2.39 -0.01 3.67 16 28 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.15 5.31 8.06 -2.92 -0.02 5.29 16 32 H 0.12 5.66 6.44 -2.91 -0.02 5.64 16 33 H 0.25 12.82 8.31 -92.71 -0.77 12.04 16 34 H 0.02 0.87 6.60 -2.39 -0.02 0.86 16 35 H 0.05 1.95 6.57 -2.39 -0.02 1.94 16 36 H 0.34 9.93 7.38 -89.69 -0.66 9.27 16 37 H 0.34 9.10 9.08 -89.69 -0.81 8.29 16 Total: -1.00 -54.23 277.08 1.87 -52.36 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.38 Total: 28.96 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.77 Total: -26.45 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.54 Total: -98.62 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -54.23 1.87 -52.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.915 kcal (2) G-P(sol) polarization free energy of solvation -54.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds