Wall clock time and date at job start Mon Mar 30 2020 03:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37861 * 119.78805 * 2 1 4 4 C 1.38267 * 119.95050 * 179.91840 * 3 2 1 5 5 C 1.38095 * 119.89292 * 0.12810 * 4 3 2 6 6 C 1.38575 * 120.48207 * 0.04306 * 5 4 3 7 7 C 1.38408 * 119.86704 * 359.75941 * 6 5 4 8 8 N 1.39404 * 122.95637 * 180.56590 * 7 6 5 9 9 C 1.46428 * 113.12824 * 339.83016 * 8 7 6 10 10 C 1.53381 * 108.66305 * 53.35878 * 9 8 7 11 11 C 1.50803 * 118.12309 * 179.58380 * 6 5 4 12 12 C 1.50700 * 109.44346 * 284.56778 * 11 6 5 13 13 H 1.08000 * 119.99791 * 355.68376 * 12 11 6 14 14 C 1.37881 * 120.00401 * 175.67892 * 12 11 6 15 15 N 1.31512 * 119.99623 * 6.92473 * 14 12 11 16 16 Si 1.86794 * 119.99991 * 186.93135 * 14 12 11 17 17 H 1.48496 * 109.47437 * 90.00035 * 16 14 12 18 18 H 1.48502 * 109.47107 * 210.00139 * 16 14 12 19 19 H 1.48501 * 109.47269 * 329.99549 * 16 14 12 20 20 C 1.53001 * 109.41391 * 44.47518 * 11 6 5 21 21 N 1.46910 * 109.46653 * 54.60594 * 20 11 6 22 22 H 1.08994 * 109.46892 * 90.00120 * 1 2 3 23 23 H 1.09001 * 109.46755 * 210.00182 * 1 2 3 24 24 H 1.08997 * 109.47238 * 330.00098 * 1 2 3 25 25 H 1.07998 * 120.02193 * 359.94211 * 3 2 1 26 26 H 1.07998 * 120.05586 * 179.85129 * 4 3 2 27 27 H 1.07995 * 119.75810 * 180.02562 * 5 4 3 28 28 H 1.00901 * 111.00481 * 214.28510 * 8 7 6 29 29 H 1.09001 * 109.60511 * 173.11197 * 9 8 7 30 30 H 1.09002 * 109.60191 * 293.60945 * 9 8 7 31 31 H 1.09003 * 109.77028 * 51.36764 * 10 9 8 32 32 H 1.09001 * 109.76394 * 172.14785 * 10 9 8 33 33 H 0.96998 * 119.99883 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47266 * 174.60343 * 20 11 6 35 35 H 1.08997 * 109.47189 * 294.60935 * 20 11 6 36 36 H 1.00899 * 111.00158 * 66.67238 * 21 20 11 37 37 H 1.00899 * 110.99712 * 190.62546 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1919 1.1965 0.0000 4 6 3.5745 1.2004 0.0017 5 6 4.2662 0.0051 0.0007 6 6 3.5846 -1.2014 -0.0028 7 6 2.2006 -1.2112 -0.0004 8 7 1.4505 -2.3863 0.0078 9 6 2.2057 -3.5539 -0.4509 10 6 3.4980 -3.6556 0.3689 11 6 4.3929 -2.4745 -0.0134 12 6 4.9575 -2.6988 -1.3926 13 1 4.6953 -2.0297 -2.1987 14 6 5.8087 -3.7582 -1.6252 15 7 6.0211 -4.6502 -0.6825 16 14 6.6603 -3.9263 -3.2792 17 1 7.9614 -3.2114 -3.2410 18 1 6.8936 -5.3633 -3.5721 19 1 5.8031 -3.3379 -4.3394 20 6 5.5393 -2.3574 0.9931 21 7 4.9977 -2.0086 2.3135 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6488 2.1300 -0.0009 26 1 4.1128 2.1367 -0.0007 27 1 5.3461 0.0107 0.0025 28 1 0.5990 -2.2755 -0.5220 29 1 1.6093 -4.4548 -0.3069 30 1 2.4505 -3.4393 -1.5069 31 1 3.2643 -3.6118 1.4327 32 1 4.0065 -4.5924 0.1408 33 1 6.6197 -5.3958 -0.8462 34 1 6.0660 -3.3096 1.0564 35 1 6.2309 -1.5805 0.6674 36 1 4.4393 -2.7620 2.6858 37 1 5.7369 -1.7566 2.9524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:44 Heat of formation + Delta-G solvation = 22.992223 kcal Electronic energy + Delta-G solvation = -18790.943743 eV Core-core repulsion = 16146.260892 eV Total energy + Delta-G solvation = -2644.682851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66829 -36.20789 -34.91452 -32.28652 -31.86766 -29.39842 -29.26785 -26.10186 -25.74742 -23.85540 -22.22685 -21.41899 -19.65248 -18.26903 -16.46723 -16.07976 -15.40959 -14.92865 -14.58902 -14.16211 -13.85809 -13.42833 -13.23051 -12.70337 -12.44252 -12.17042 -12.04042 -11.91867 -11.39553 -11.31556 -11.03653 -11.00075 -10.80890 -10.64393 -10.50104 -10.18871 -9.47925 -9.30029 -9.16924 -8.89630 -8.40186 -7.59171 -7.50081 -6.73410 -6.07818 -4.17440 2.30722 2.43409 3.23109 3.30870 3.34775 4.32955 4.62610 4.97086 5.13608 5.50331 5.58901 5.73310 5.85475 5.90394 5.99097 6.13624 6.18551 6.24008 6.30669 6.40931 6.56188 6.66922 6.67490 6.94776 7.02957 7.13958 7.23390 7.28329 7.38728 7.55128 7.57739 7.65284 7.82624 8.02025 8.04745 8.18833 8.27248 8.39494 8.45727 8.84834 9.47003 10.90900 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.008885 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.319946 B = 3150.706022 C = 3195.944741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.150 4.150 3 C -0.120 4.120 4 C -0.163 4.163 5 C -0.078 4.078 6 C -0.042 4.042 7 C 0.123 3.877 8 N -0.636 5.636 9 C 0.064 3.936 10 C -0.107 4.107 11 C 0.114 3.886 12 C -0.500 4.500 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.073 3.927 21 N -0.854 5.854 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.342 0.658 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.328 0.672 37 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 4.450 1.824 7.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.153 4.153 3 C -0.138 4.138 4 C -0.183 4.183 5 C -0.097 4.097 6 C -0.045 4.045 7 C 0.023 3.977 8 N -0.259 5.259 9 C -0.063 4.063 10 C -0.145 4.145 11 C 0.113 3.887 12 C -0.538 4.538 13 H 0.074 0.926 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.057 4.057 21 N -0.381 5.381 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.165 0.835 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.949 4.629 2.072 7.817 hybrid contribution 1.105 -0.694 -1.333 1.866 sum -4.843 3.935 0.739 6.284 Atomic orbital electron populations 1.20595 0.92500 1.02142 1.00904 1.19547 0.94908 0.92452 1.08357 1.20443 0.94144 0.96038 1.03203 1.20782 0.94051 0.97437 1.05984 1.20835 0.99368 0.91445 0.98070 1.19803 0.90830 0.96804 0.97081 1.18358 0.91918 0.88491 0.98934 1.56699 1.08714 1.03575 1.56938 1.22031 0.95390 0.89871 0.99010 1.21777 0.93386 1.03385 0.95934 1.17181 0.90330 0.87072 0.94111 1.21078 1.27211 1.11452 0.94079 0.92587 1.24917 0.96432 0.95295 0.96779 1.69810 1.36810 1.12814 1.32999 0.86619 0.80160 0.77122 0.84317 1.20631 1.21292 1.19965 1.21938 0.97141 0.99679 0.86926 1.58967 1.27137 1.46337 1.05687 0.92661 0.91611 0.92401 0.87785 0.87816 0.87028 0.83476 0.92297 0.93305 0.94672 0.88184 0.92899 0.92045 0.93570 0.85995 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.13 36.01 0.33 -1.17 16 2 C -0.15 -2.75 5.90 -104.26 -0.62 -3.37 16 3 C -0.12 -2.14 9.67 -39.71 -0.38 -2.52 16 4 C -0.16 -3.07 10.05 -39.62 -0.40 -3.47 16 5 C -0.08 -1.67 8.88 -39.51 -0.35 -2.02 16 6 C -0.04 -0.94 4.11 -104.38 -0.43 -1.37 16 7 C 0.12 2.54 6.22 -83.86 -0.52 2.02 16 8 N -0.64 -12.06 6.03 -58.51 -0.35 -12.42 16 9 C 0.06 1.30 6.57 -3.88 -0.03 1.27 16 10 C -0.11 -2.41 4.77 -26.51 -0.13 -2.53 16 11 C 0.11 2.66 0.20 -156.74 -0.03 2.62 16 12 C -0.50 -12.80 7.04 -34.44 -0.24 -13.04 16 13 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 14 C 0.07 1.71 5.08 -17.82 -0.09 1.62 16 15 N -0.89 -22.84 9.44 55.43 0.52 -22.31 16 16 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.07 1.65 4.82 -3.82 -0.02 1.63 16 21 N -0.85 -16.79 8.85 -10.36 -0.09 -16.88 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.92 6.93 -51.93 -0.36 0.56 16 24 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 26 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.11 2.39 6.61 -52.49 -0.35 2.04 16 28 H 0.34 5.59 7.08 -39.29 -0.28 5.31 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.07 7.36 -51.93 -0.38 0.69 16 31 H 0.03 0.78 6.49 -51.93 -0.34 0.44 16 32 H 0.10 2.48 5.97 -51.93 -0.31 2.17 16 33 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.06 1.52 6.19 -51.93 -0.32 1.20 16 35 H 0.05 1.07 6.77 -51.93 -0.35 0.72 16 36 H 0.33 6.37 7.45 -39.29 -0.29 6.08 16 37 H 0.32 5.49 9.08 -39.29 -0.36 5.13 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -26.57 284.11 -8.56 -35.13 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -4.99 Total: 17.20 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.91 Total: -20.32 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.08 Total: -51.61 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.57 -8.56 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.119 kcal (2) G-P(sol) polarization free energy of solvation -26.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds