Wall clock time and date at job start Mon Mar 30 2020 03:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37861 * 119.78805 * 2 1 4 4 C 1.38267 * 119.95050 * 179.91840 * 3 2 1 5 5 C 1.38095 * 119.89292 * 0.12810 * 4 3 2 6 6 C 1.38575 * 120.48207 * 0.04306 * 5 4 3 7 7 C 1.38408 * 119.86704 * 359.75941 * 6 5 4 8 8 N 1.39404 * 122.95637 * 180.56590 * 7 6 5 9 9 C 1.46428 * 113.12824 * 339.83016 * 8 7 6 10 10 C 1.53381 * 108.66305 * 53.35878 * 9 8 7 11 11 C 1.50803 * 118.12309 * 179.58380 * 6 5 4 12 12 C 1.50700 * 109.44346 * 284.56778 * 11 6 5 13 13 H 1.08000 * 119.99791 * 355.68376 * 12 11 6 14 14 C 1.37881 * 120.00401 * 175.67892 * 12 11 6 15 15 N 1.31512 * 119.99623 * 6.92473 * 14 12 11 16 16 Si 1.86794 * 119.99991 * 186.93135 * 14 12 11 17 17 H 1.48496 * 109.47437 * 90.00035 * 16 14 12 18 18 H 1.48502 * 109.47107 * 210.00139 * 16 14 12 19 19 H 1.48501 * 109.47269 * 329.99549 * 16 14 12 20 20 C 1.53001 * 109.41391 * 44.47518 * 11 6 5 21 21 N 1.46910 * 109.46653 * 54.60594 * 20 11 6 22 22 H 1.08994 * 109.46892 * 90.00120 * 1 2 3 23 23 H 1.09001 * 109.46755 * 210.00182 * 1 2 3 24 24 H 1.08997 * 109.47238 * 330.00098 * 1 2 3 25 25 H 1.07998 * 120.02193 * 359.94211 * 3 2 1 26 26 H 1.07998 * 120.05586 * 179.85129 * 4 3 2 27 27 H 1.07995 * 119.75810 * 180.02562 * 5 4 3 28 28 H 1.00901 * 111.00481 * 214.28510 * 8 7 6 29 29 H 1.09001 * 109.60511 * 173.11197 * 9 8 7 30 30 H 1.09002 * 109.60191 * 293.60945 * 9 8 7 31 31 H 1.09003 * 109.77028 * 51.36764 * 10 9 8 32 32 H 1.09001 * 109.76394 * 172.14785 * 10 9 8 33 33 H 0.96998 * 119.99883 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47266 * 174.60343 * 20 11 6 35 35 H 1.08997 * 109.47189 * 294.60935 * 20 11 6 36 36 H 1.00899 * 111.00158 * 66.67238 * 21 20 11 37 37 H 1.00899 * 110.99712 * 190.62546 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1919 1.1965 0.0000 4 6 3.5745 1.2004 0.0017 5 6 4.2662 0.0051 0.0007 6 6 3.5846 -1.2014 -0.0028 7 6 2.2006 -1.2112 -0.0004 8 7 1.4505 -2.3863 0.0078 9 6 2.2057 -3.5539 -0.4509 10 6 3.4980 -3.6556 0.3689 11 6 4.3929 -2.4745 -0.0134 12 6 4.9575 -2.6988 -1.3926 13 1 4.6953 -2.0297 -2.1987 14 6 5.8087 -3.7582 -1.6252 15 7 6.0211 -4.6502 -0.6825 16 14 6.6603 -3.9263 -3.2792 17 1 7.9614 -3.2114 -3.2410 18 1 6.8936 -5.3633 -3.5721 19 1 5.8031 -3.3379 -4.3394 20 6 5.5393 -2.3574 0.9931 21 7 4.9977 -2.0086 2.3135 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6488 2.1300 -0.0009 26 1 4.1128 2.1367 -0.0007 27 1 5.3461 0.0107 0.0025 28 1 0.5990 -2.2755 -0.5220 29 1 1.6093 -4.4548 -0.3069 30 1 2.4505 -3.4393 -1.5069 31 1 3.2643 -3.6118 1.4327 32 1 4.0065 -4.5924 0.1408 33 1 6.6197 -5.3958 -0.8462 34 1 6.0660 -3.3096 1.0564 35 1 6.2309 -1.5805 0.6674 36 1 4.4393 -2.7620 2.6858 37 1 5.7369 -1.7566 2.9524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:44 Heat of formation + Delta-G solvation = 6.362868 kcal Electronic energy + Delta-G solvation = -18791.664846 eV Core-core repulsion = 16146.260892 eV Total energy + Delta-G solvation = -2645.403954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23565 -37.83603 -36.49640 -34.17471 -33.36950 -31.00666 -30.85881 -27.64607 -27.35443 -25.68546 -23.83138 -23.02476 -21.20530 -20.01964 -18.02165 -17.87327 -16.98995 -16.81637 -16.22263 -15.83383 -15.34649 -15.13617 -14.55436 -14.20554 -13.99964 -13.87854 -13.67266 -13.36023 -12.92700 -12.92545 -12.83071 -12.74657 -12.41454 -12.34156 -12.06331 -11.98716 -11.15599 -11.06456 -10.91866 -10.60003 -10.29414 -9.25164 -9.06972 -8.28278 -8.00778 -6.17976 0.80548 0.92268 1.37954 1.42179 1.49312 2.42463 3.11410 3.16024 3.45873 4.04962 4.18038 4.23450 4.37662 4.52827 4.54459 4.65473 4.77153 4.81791 4.85964 4.94058 4.99232 5.05932 5.19141 5.23166 5.42783 5.51824 5.53763 5.59464 5.71512 5.82849 5.92828 6.00259 6.11745 6.32041 6.33388 6.57596 6.60084 6.75384 6.79808 6.94087 7.47658 8.92971 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.008885 C = 0.008759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.319946 B = 3150.706022 C = 3195.944741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.149 4.149 3 C -0.119 4.119 4 C -0.164 4.164 5 C -0.102 4.102 6 C -0.068 4.068 7 C 0.099 3.901 8 N -0.627 5.627 9 C 0.071 3.929 10 C -0.100 4.100 11 C 0.111 3.889 12 C -0.510 4.510 13 H 0.035 0.965 14 C 0.033 3.967 15 N -0.898 5.898 16 Si 0.939 3.061 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.278 1.278 20 C 0.088 3.912 21 N -0.845 5.845 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.358 0.642 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.030 0.970 36 H 0.332 0.668 37 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 5.774 1.906 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.137 4.137 4 C -0.183 4.183 5 C -0.121 4.121 6 C -0.071 4.071 7 C -0.001 4.001 8 N -0.252 5.252 9 C -0.056 4.056 10 C -0.139 4.139 11 C 0.110 3.890 12 C -0.549 4.549 13 H 0.053 0.947 14 C -0.167 4.167 15 N -0.537 5.537 16 Si 0.766 3.234 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.203 1.203 20 C -0.043 4.043 21 N -0.374 5.374 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.114 0.886 28 H 0.184 0.816 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.144 0.856 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.754 5.960 2.163 10.016 hybrid contribution 1.644 -1.028 -1.336 2.355 sum -6.110 4.932 0.827 7.895 Atomic orbital electron populations 1.20652 0.89392 1.03388 1.02386 1.20034 0.97227 0.91627 1.06296 1.20885 0.93834 0.97411 1.01591 1.21087 0.94973 0.97408 1.04799 1.20847 0.98859 0.92471 0.99890 1.19784 0.91852 0.96374 0.99134 1.18604 0.91657 0.89997 0.99856 1.56665 1.08839 1.02642 1.57043 1.21878 0.95025 0.91589 0.97156 1.21606 0.94294 1.01817 0.96144 1.17117 0.90685 0.88285 0.92901 1.21165 1.27718 1.11102 0.94879 0.94664 1.25424 0.96935 0.95191 0.99176 1.69916 1.36947 1.12890 1.33938 0.85859 0.79090 0.77052 0.81425 1.20607 1.20811 1.20273 1.21628 0.96664 0.97637 0.88374 1.58859 1.27513 1.46133 1.04909 0.90906 0.91328 0.90258 0.84203 0.85384 0.88599 0.81640 0.89968 0.95531 0.94721 0.90739 0.93012 0.94556 0.95111 0.85634 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.13 71.24 0.65 -1.84 16 2 C -0.15 -5.03 5.90 -19.63 -0.12 -5.15 16 3 C -0.12 -3.84 9.67 22.19 0.21 -3.62 16 4 C -0.16 -5.84 10.05 22.24 0.22 -5.61 16 5 C -0.10 -4.34 8.88 22.32 0.20 -4.14 16 6 C -0.07 -3.06 4.11 -19.71 -0.08 -3.14 16 7 C 0.10 3.96 6.22 38.30 0.24 4.19 16 8 N -0.63 -22.82 6.03 -339.03 -2.05 -24.87 16 9 C 0.07 2.86 6.57 86.52 0.57 3.43 16 10 C -0.10 -4.60 4.77 30.74 0.15 -4.45 16 11 C 0.11 5.30 0.20 -53.63 -0.01 5.29 16 12 C -0.51 -26.95 7.04 25.60 0.18 -26.77 16 13 H 0.04 1.96 7.75 -2.91 -0.02 1.94 16 14 C 0.03 1.70 5.08 84.66 0.43 2.13 16 15 N -0.90 -47.48 9.44 21.45 0.20 -47.28 16 16 Si 0.94 42.46 29.54 68.60 2.03 44.49 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C 0.09 4.08 4.82 86.30 0.42 4.50 16 21 N -0.85 -33.45 8.85 -186.70 -1.65 -35.11 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.66 6.93 -2.39 -0.02 1.64 16 24 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 25 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 26 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.10 4.25 6.61 -2.91 -0.02 4.23 16 28 H 0.36 10.86 7.08 -89.69 -0.63 10.23 16 29 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.03 1.18 7.36 -2.39 -0.02 1.16 16 31 H 0.03 1.55 6.49 -2.39 -0.02 1.53 16 32 H 0.07 3.79 5.97 -2.39 -0.01 3.77 16 33 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.04 1.86 6.19 -2.39 -0.01 1.85 16 35 H 0.03 1.49 6.77 -2.39 -0.02 1.47 16 36 H 0.33 12.87 7.45 -89.69 -0.67 12.21 16 37 H 0.33 11.44 9.08 -89.69 -0.81 10.63 16 Total: -1.00 -57.59 284.11 0.58 -57.01 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -1.01 Total: 40.95 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.06 Total: -35.19 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -3.49 Total: -107.25 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -57.59 0.58 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.369 kcal (2) G-P(sol) polarization free energy of solvation -57.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds