Wall clock time and date at job start Mon Mar 30 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37851 * 119.79046 * 2 1 4 4 C 1.38266 * 119.95320 * 179.76102 * 3 2 1 5 5 C 1.38103 * 119.88695 * 0.15399 * 4 3 2 6 6 C 1.38574 * 120.48716 * 359.90586 * 5 4 3 7 7 C 1.38411 * 119.86354 * 359.84123 * 6 5 4 8 8 N 1.39404 * 122.94583 * 180.79626 * 7 6 5 9 9 C 1.46426 * 113.11726 * 339.60633 * 8 7 6 10 10 C 1.53372 * 108.66144 * 53.44092 * 9 8 7 11 11 C 1.50800 * 118.13003 * 179.63774 * 6 5 4 12 12 C 1.50707 * 109.43825 * 44.39828 * 11 6 5 13 13 H 1.08001 * 119.99689 * 236.53959 * 12 11 6 14 14 C 1.37877 * 120.00019 * 56.54299 * 12 11 6 15 15 N 1.31514 * 119.99850 * 354.12287 * 14 12 11 16 16 Si 1.86802 * 119.99682 * 174.13053 * 14 12 11 17 17 H 1.48494 * 109.47150 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46874 * 119.99901 * 16 14 12 19 19 H 1.48504 * 109.46704 * 239.99598 * 16 14 12 20 20 C 1.52999 * 109.43922 * 284.47544 * 11 6 5 21 21 N 1.46894 * 109.47053 * 65.40547 * 20 11 6 22 22 H 1.09007 * 109.47165 * 89.99877 * 1 2 3 23 23 H 1.08997 * 109.47655 * 209.99779 * 1 2 3 24 24 H 1.08997 * 109.47320 * 330.00038 * 1 2 3 25 25 H 1.07995 * 120.02463 * 359.78702 * 3 2 1 26 26 H 1.07993 * 120.05662 * 180.12853 * 4 3 2 27 27 H 1.08002 * 119.75224 * 179.88660 * 5 4 3 28 28 H 1.00897 * 111.00023 * 105.14951 * 8 7 6 29 29 H 1.09007 * 109.60469 * 293.69279 * 9 8 7 30 30 H 1.08994 * 109.60600 * 173.19728 * 9 8 7 31 31 H 1.09002 * 109.76923 * 172.17736 * 10 9 8 32 32 H 1.09006 * 109.77148 * 51.40172 * 10 9 8 33 33 H 0.96999 * 119.99571 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46699 * 185.40041 * 20 11 6 35 35 H 1.08996 * 109.47228 * 305.40220 * 20 11 6 36 36 H 1.00903 * 111.00235 * 171.18637 * 21 20 11 37 37 H 1.00905 * 110.99743 * 295.13451 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1919 1.1963 0.0000 4 6 3.5745 1.2003 0.0050 5 6 4.2661 0.0049 0.0068 6 6 3.5845 -1.2017 0.0055 7 6 2.2004 -1.2113 0.0058 8 7 1.4505 -2.3864 0.0209 9 6 2.2052 -3.5559 -0.4336 10 6 3.4979 -3.6546 0.3859 11 6 4.3927 -2.4748 -0.0009 12 6 5.5220 -2.3569 0.9901 13 1 6.5424 -2.4964 0.6649 14 6 5.2526 -2.0711 2.3117 15 7 4.0241 -1.7874 2.6858 16 14 6.6325 -2.0865 3.5707 17 1 7.9110 -2.4330 2.8996 18 1 6.7483 -0.7439 4.1945 19 1 6.3347 -3.0954 4.6189 20 6 4.9654 -2.7073 -1.4004 21 7 5.9277 -1.6441 -1.7185 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6489 2.1299 -0.0035 26 1 4.1128 2.1365 0.0071 27 1 5.3461 0.0105 0.0088 28 1 1.0486 -2.5472 0.9323 29 1 2.4496 -3.4456 -1.4902 30 1 1.6088 -4.4562 -0.2858 31 1 4.0064 -4.5922 0.1608 32 1 3.2646 -3.6072 1.4496 33 1 3.8346 -1.5859 3.6155 34 1 5.4686 -3.6738 -1.4310 35 1 4.1563 -2.6956 -2.1307 36 1 6.4251 -1.8499 -2.5720 37 1 5.4697 -0.7467 -1.7744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:46 Heat of formation + Delta-G solvation = 26.411180 kcal Electronic energy + Delta-G solvation = -19069.183734 eV Core-core repulsion = 16424.649140 eV Total energy + Delta-G solvation = -2644.534594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60210 -36.08792 -34.78923 -32.42451 -31.40898 -29.65379 -29.07354 -25.79976 -25.50713 -23.89674 -22.10444 -21.44901 -19.90740 -18.11526 -16.62873 -15.72965 -15.34307 -14.72724 -14.45145 -14.31813 -13.77550 -13.34565 -13.11284 -12.69900 -12.46874 -12.31017 -11.82481 -11.71679 -11.52418 -11.16837 -11.07459 -10.92498 -10.68960 -10.55407 -10.19464 -10.09690 -9.58971 -9.33078 -9.18230 -8.39492 -8.28970 -7.77513 -7.26600 -6.80636 -5.90572 -3.96480 2.52415 2.62576 3.32202 3.41628 3.46209 4.48228 4.83837 5.08394 5.29605 5.51617 5.77261 5.83257 5.91053 6.04045 6.08738 6.13788 6.23739 6.26803 6.29783 6.42176 6.49345 6.61428 6.62640 6.76071 6.92589 6.97099 7.26513 7.29392 7.50795 7.55445 7.61446 7.85126 7.97228 8.03241 8.05743 8.15525 8.23858 8.45507 8.54620 9.07069 9.65567 11.10458 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.010941 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.642391 B = 2558.653323 C = 2734.745443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.112 4.112 3 C -0.139 4.139 4 C -0.154 4.154 5 C -0.086 4.086 6 C -0.014 4.014 7 C 0.106 3.894 8 N -0.637 5.637 9 C 0.054 3.946 10 C -0.141 4.141 11 C 0.104 3.896 12 C -0.482 4.482 13 H 0.068 0.932 14 C 0.063 3.937 15 N -0.878 5.878 16 Si 0.886 3.114 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.084 3.916 21 N -0.834 5.834 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.346 0.654 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.255 0.745 34 H 0.058 0.942 35 H 0.000 1.000 36 H 0.318 0.682 37 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 0.739 -5.897 7.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.157 4.157 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.018 4.018 7 C 0.009 3.991 8 N -0.265 5.265 9 C -0.075 4.075 10 C -0.181 4.181 11 C 0.103 3.897 12 C -0.520 4.520 13 H 0.086 0.914 14 C -0.139 4.139 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.047 4.047 21 N -0.364 5.364 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.171 0.829 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.018 0.982 36 H 0.129 0.871 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.912 0.644 -5.621 6.879 hybrid contribution 0.661 0.114 0.884 1.110 sum -3.251 0.758 -4.737 5.795 Atomic orbital electron populations 1.20465 0.92553 1.01004 1.00760 1.19533 0.94898 0.92184 1.04757 1.20444 0.94225 0.96042 1.05026 1.20867 0.94058 0.97551 1.04774 1.21026 1.00164 0.91144 0.98152 1.20153 0.91264 0.96626 0.93722 1.18195 0.90827 0.89184 1.00917 1.57315 1.35644 1.02233 1.31326 1.22122 0.94704 0.91376 0.99257 1.22327 0.95164 0.98540 1.02088 1.17259 0.92643 0.88420 0.91347 1.20956 0.92534 1.47271 0.91217 0.91409 1.24938 0.95191 0.95290 0.98482 1.69948 1.18456 1.46670 1.16496 0.86623 0.82975 0.77291 0.81630 1.19855 1.21426 1.21509 1.21833 0.92112 0.94030 0.96732 1.58745 1.32582 1.05446 1.39591 0.92715 0.91984 0.93491 0.88181 0.88190 0.85669 0.82892 0.92023 0.92256 0.93704 0.89390 0.93446 0.92330 0.98186 0.87118 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.71 36.01 0.35 -1.16 16 2 C -0.11 -2.25 5.91 -104.26 -0.62 -2.87 16 3 C -0.14 -2.72 9.67 -39.71 -0.38 -3.11 16 4 C -0.15 -3.14 10.05 -39.62 -0.40 -3.54 16 5 C -0.09 -1.93 7.02 -39.51 -0.28 -2.20 16 6 C -0.01 -0.33 3.04 -104.39 -0.32 -0.65 16 7 C 0.11 2.29 6.11 -83.85 -0.51 1.77 16 8 N -0.64 -12.42 5.38 -58.51 -0.31 -12.74 16 9 C 0.05 1.02 6.57 -3.89 -0.03 0.99 16 10 C -0.14 -3.05 4.82 -26.52 -0.13 -3.18 16 11 C 0.10 2.35 0.27 -156.74 -0.04 2.31 16 12 C -0.48 -12.28 6.35 -34.44 -0.22 -12.50 16 13 H 0.07 1.81 7.56 -52.49 -0.40 1.41 16 14 C 0.06 1.64 4.88 -17.82 -0.09 1.56 16 15 N -0.88 -23.50 10.63 55.43 0.59 -22.91 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.08 1.67 5.41 -3.83 -0.02 1.65 16 21 N -0.83 -15.53 8.28 -10.37 -0.09 -15.62 16 22 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.06 1.01 7.08 -51.93 -0.37 0.64 16 24 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.13 2.91 6.32 -52.49 -0.33 2.57 16 28 H 0.35 6.71 8.51 -39.29 -0.33 6.38 16 29 H 0.06 1.15 6.58 -51.93 -0.34 0.81 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 32 H 0.09 2.16 6.42 -51.93 -0.33 1.82 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.00 0.00 6.81 -51.93 -0.35 -0.35 16 36 H 0.32 4.94 9.08 -39.29 -0.36 4.59 16 37 H 0.34 6.26 6.29 -39.29 -0.25 6.01 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -27.17 284.53 -8.37 -35.54 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.15 Total: 16.23 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.68 Total: -20.91 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.19 Total: -51.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.17 -8.37 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.955 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds