Wall clock time and date at job start Mon Mar 30 2020 04:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48536 * 111.00374 * 2 1 4 4 C 1.54934 * 103.22807 * 200.27734 * 3 2 1 5 5 C 1.54597 * 102.92083 * 37.41772 * 4 3 2 6 6 H 1.08999 * 110.31150 * 96.95653 * 5 4 3 7 7 C 1.50696 * 110.30616 * 219.02488 * 5 4 3 8 8 H 1.08008 * 120.00330 * 118.54805 * 7 5 4 9 9 C 1.37877 * 120.00325 * 298.54555 * 7 5 4 10 10 N 1.31519 * 119.99623 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00396 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47243 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47332 * 119.99503 * 11 9 7 14 14 H 1.48500 * 109.47267 * 240.00099 * 11 9 7 15 15 C 1.47907 * 111.00183 * 242.60561 * 2 1 3 16 16 H 1.09003 * 109.91216 * 26.49003 * 15 2 1 17 17 C 1.52997 * 109.91393 * 265.20172 * 15 2 1 18 18 C 1.50699 * 109.47617 * 66.45180 * 17 15 2 19 19 C 1.38654 * 120.78814 * 269.71954 * 18 17 15 20 20 C 1.38202 * 119.15955 * 179.80018 * 19 18 17 21 21 N 1.31869 * 120.76418 * 0.48123 * 20 19 18 22 22 C 1.31866 * 121.72962 * 359.74718 * 21 20 19 23 23 C 1.38201 * 120.76034 * 0.02562 * 22 21 20 24 24 H 1.09007 * 109.46916 * 59.86959 * 1 2 3 25 25 H 1.08995 * 109.47150 * 179.87374 * 1 2 3 26 26 H 1.08998 * 109.47104 * 299.87528 * 1 2 3 27 27 H 1.08997 * 110.66431 * 318.71899 * 3 2 1 28 28 H 1.09004 * 110.66371 * 81.84239 * 3 2 1 29 29 H 1.08997 * 110.72246 * 155.77225 * 4 3 2 30 30 H 1.08992 * 110.72769 * 278.87569 * 4 3 2 31 31 H 0.97002 * 119.99578 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.47301 * 186.45170 * 17 15 2 33 33 H 1.09004 * 109.47530 * 306.44878 * 17 15 2 34 34 H 1.08002 * 120.41573 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.61466 * 180.20790 * 20 19 18 36 36 H 1.08001 * 119.61693 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.41790 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1053 -1.5931 6 1 3.2137 0.5485 -2.5853 7 6 4.4728 -0.8373 -1.5407 8 1 4.3172 -1.8822 -1.3160 9 6 5.7463 -0.3660 -1.7797 10 7 5.9359 0.9062 -2.0538 11 14 7.2022 -1.5346 -1.7155 12 1 6.7249 -2.9026 -1.3898 13 1 7.8842 -1.5488 -3.0346 14 1 8.1550 -1.0815 -0.6704 15 6 1.9991 -0.6353 -1.2260 16 1 1.2758 -0.5402 -2.0359 17 6 2.2982 -2.1120 -0.9601 18 6 1.0086 -2.8469 -0.6995 19 6 0.5080 -2.9673 0.5879 20 6 -0.6798 -3.6448 0.7879 21 7 -1.3297 -4.1808 -0.2266 22 6 -0.8812 -4.0900 -1.4633 23 6 0.2974 -3.4237 -1.7406 24 1 -0.3633 0.5159 -0.8889 25 1 -0.3633 -1.0276 -0.0023 26 1 -0.3633 0.5119 0.8911 27 1 1.4238 2.0205 -0.6728 28 1 2.0042 1.7976 1.0096 29 1 3.8124 2.1351 -0.9715 30 1 4.1122 0.8866 0.2794 31 1 6.8319 1.2379 -2.2216 32 1 2.7936 -2.5447 -1.8293 33 1 2.9488 -2.2001 -0.0899 34 1 1.0383 -2.5347 1.4235 35 1 -1.0782 -3.7401 1.7873 36 1 -1.4413 -4.5416 -2.2688 37 1 0.6599 -3.3530 -2.7556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:03 Heat of formation + Delta-G solvation = 24.838447 kcal Electronic energy + Delta-G solvation = -18215.896048 eV Core-core repulsion = 15571.293255 eV Total energy + Delta-G solvation = -2644.602793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24535 -39.78813 -35.13696 -34.89145 -32.51229 -31.94755 -30.89170 -27.87030 -26.18172 -25.38220 -24.22953 -22.90383 -21.71159 -20.76284 -18.29055 -17.21658 -17.09329 -16.71944 -16.38219 -16.28047 -15.93804 -15.32170 -14.65748 -14.50433 -14.34928 -14.07349 -13.74685 -13.50738 -13.25149 -12.90590 -12.72317 -12.42246 -12.40757 -12.11276 -11.91418 -11.81532 -11.54254 -11.17259 -10.75355 -10.46803 -10.29370 -10.12405 -9.90959 -9.23428 -8.08233 -6.14755 0.33042 0.43498 1.41870 1.45535 1.54825 2.46486 2.99091 3.20757 3.25088 3.68906 3.83995 4.02608 4.17727 4.22969 4.34505 4.37586 4.39291 4.46147 4.58432 4.67819 4.78591 4.82282 4.87707 4.93804 4.99475 5.07503 5.17193 5.25318 5.35797 5.47119 5.60916 5.67647 5.75096 5.89244 5.92309 6.19374 6.30700 6.41592 6.93417 7.12611 7.52642 9.01983 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.007375 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.786870 B = 3795.954367 C = 4542.777988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.514 5.514 3 C 0.037 3.963 4 C -0.082 4.082 5 C 0.036 3.964 6 H -0.005 1.005 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.011 3.989 10 N -0.923 5.923 11 Si 0.946 3.054 12 H -0.262 1.262 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.092 3.908 16 H 0.029 0.971 17 C -0.045 4.045 18 C -0.037 4.037 19 C -0.157 4.157 20 C 0.088 3.912 21 N -0.514 5.514 22 C 0.091 3.909 23 C -0.184 4.184 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.257 0.743 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -5.640 3.712 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.238 5.238 3 C -0.090 4.090 4 C -0.121 4.121 5 C 0.017 3.983 6 H 0.013 0.987 7 C -0.559 4.559 8 H 0.099 0.901 9 C -0.187 4.187 10 N -0.563 5.563 11 Si 0.773 3.227 12 H -0.186 1.186 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.016 4.016 16 H 0.047 0.953 17 C -0.083 4.083 18 C -0.045 4.045 19 C -0.177 4.177 20 C -0.068 4.068 21 N -0.224 5.224 22 C -0.066 4.066 23 C -0.203 4.203 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.810 -6.259 4.299 14.040 hybrid contribution 1.755 0.894 -1.180 2.295 sum -10.055 -5.365 3.120 11.816 Atomic orbital electron populations 1.22691 0.87902 1.02333 1.00407 1.64616 1.07763 1.14546 1.36900 1.23266 0.95574 0.89680 1.00496 1.22132 0.93708 0.98241 0.97995 1.19494 0.92141 0.93477 0.93201 0.98731 1.21880 0.91403 0.96177 1.46406 0.90144 1.25736 1.01520 0.96224 0.95262 1.70121 1.21952 1.14849 1.49411 0.85671 0.79885 0.79948 0.77181 1.18614 1.21248 1.21281 1.22191 0.95640 0.94155 0.89622 0.95337 1.20561 0.92308 0.93019 1.02375 1.20703 0.96151 0.93733 0.93907 1.22144 0.97857 1.00100 0.97582 1.23070 0.91711 0.93163 0.98826 1.67690 1.34234 1.19839 1.00638 1.23033 0.93535 0.95616 0.94396 1.22255 0.97221 1.00337 1.00523 0.96653 0.90988 0.90390 0.94572 0.89680 0.94505 0.94175 0.93450 0.90782 0.90947 0.84369 0.80747 0.80748 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.94 127.69 1.14 1.58 16 2 N -0.51 -18.16 4.95 -884.07 -4.38 -22.54 16 3 C 0.04 1.37 6.56 86.65 0.57 1.94 16 4 C -0.08 -3.79 5.58 31.80 0.18 -3.61 16 5 C 0.04 1.73 2.92 -10.66 -0.03 1.70 16 6 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 7 C -0.52 -26.90 7.55 25.60 0.19 -26.71 16 8 H 0.08 3.95 4.71 -2.91 -0.01 3.94 16 9 C 0.01 0.58 5.33 84.65 0.45 1.03 16 10 N -0.92 -52.78 12.42 21.45 0.27 -52.51 16 11 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 C 0.09 3.63 2.60 45.05 0.12 3.75 16 16 H 0.03 1.12 7.70 -2.39 -0.02 1.10 16 17 C -0.04 -1.63 3.56 29.85 0.11 -1.52 16 18 C -0.04 -1.12 3.99 -19.67 -0.08 -1.19 16 19 C -0.16 -4.26 7.27 22.36 0.16 -4.10 16 20 C 0.09 2.16 11.16 84.68 0.95 3.11 16 21 N -0.51 -13.72 10.36 -195.85 -2.03 -15.75 16 22 C 0.09 2.23 11.18 84.68 0.95 3.18 16 23 C -0.18 -4.96 9.82 22.36 0.22 -4.74 16 24 H 0.01 0.45 7.99 -2.38 -0.02 0.43 16 25 H 0.07 2.06 4.60 -2.39 -0.01 2.05 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 1.27 8.00 -2.39 -0.02 1.25 16 28 H 0.08 2.78 8.14 -2.38 -0.02 2.77 16 29 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 30 H 0.04 2.00 7.86 -2.39 -0.02 1.98 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.07 2.82 6.84 -2.39 -0.02 2.80 16 33 H 0.07 2.85 7.31 -2.38 -0.02 2.84 16 34 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -59.08 293.05 1.85 -57.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.05 Total: 14.42 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.92 Total: -25.58 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -6.14 Total: -90.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -59.08 1.85 -57.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.071 kcal (2) G-P(sol) polarization free energy of solvation -59.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds