Wall clock time and date at job start Mon Mar 30 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.48558 * 110.99962 * 2 1 4 4 C 1.54382 * 104.59386 * 200.96319 * 3 2 1 5 5 C 1.54259 * 105.05872 * 23.85241 * 4 3 2 6 6 H 1.08999 * 110.32520 * 241.10079 * 5 4 3 7 7 C 1.50701 * 110.32213 * 118.89766 * 5 4 3 8 8 H 1.08000 * 120.00465 * 244.36406 * 7 5 4 9 9 C 1.37882 * 119.99997 * 64.35801 * 7 5 4 10 10 N 1.31511 * 119.99961 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00149 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46776 * 60.00295 * 11 9 7 13 13 H 1.48499 * 109.47272 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47057 * 300.00471 * 11 9 7 15 15 C 1.48560 * 110.99746 * 244.58622 * 2 1 3 16 16 H 1.09005 * 110.51547 * 40.20553 * 15 2 1 17 17 C 1.53007 * 110.41013 * 277.81674 * 15 2 1 18 18 C 1.50693 * 109.47419 * 179.63070 * 17 15 2 19 19 C 1.38656 * 120.78989 * 276.43004 * 18 17 15 20 20 C 1.38202 * 119.16052 * 180.21707 * 19 18 17 21 21 N 1.31871 * 120.76752 * 359.47819 * 20 19 18 22 22 C 1.31875 * 121.72103 * 0.27182 * 21 20 19 23 23 C 1.38201 * 120.76518 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47166 * 181.00305 * 1 2 3 25 25 H 1.09001 * 109.46883 * 300.99927 * 1 2 3 26 26 H 1.08996 * 109.47309 * 61.00283 * 1 2 3 27 27 H 1.09005 * 110.41266 * 82.18236 * 3 2 1 28 28 H 1.09002 * 110.51141 * 319.79252 * 3 2 1 29 29 H 1.08996 * 110.32191 * 264.95659 * 4 3 2 30 30 H 1.08998 * 110.40735 * 142.79627 * 4 3 2 31 31 H 0.97000 * 119.99904 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46868 * 59.63256 * 17 15 2 33 33 H 1.08998 * 109.46931 * 299.63315 * 17 15 2 34 34 H 1.08001 * 120.42066 * 359.97438 * 19 18 17 35 35 H 1.07998 * 119.61777 * 179.74823 * 20 19 18 36 36 H 1.08005 * 119.61213 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.41728 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1483 -0.7693 -0.9353 7 6 3.7894 0.2356 -2.7965 8 1 3.0615 0.0562 -3.5739 9 6 5.0354 0.7297 -3.1196 10 7 5.9220 0.9478 -2.1730 11 14 5.4648 1.0879 -4.9019 12 1 4.5251 2.1025 -5.4431 13 1 6.8539 1.6065 -4.9819 14 1 5.3566 -0.1612 -5.6977 15 6 2.0014 -0.5952 -1.2527 16 1 1.4104 -0.2729 -2.1101 17 6 2.0105 -2.1222 -1.1561 18 6 2.5451 -2.7036 -2.4395 19 6 1.7151 -2.8889 -3.5346 20 6 2.2398 -3.4291 -4.6935 21 7 3.5149 -3.7569 -4.7679 22 6 4.3344 -3.5899 -3.7482 23 6 3.8799 -3.0600 -2.5555 24 1 -0.3633 -1.0275 0.0180 25 1 -0.3633 0.5293 0.8809 26 1 -0.3634 0.4981 -0.8988 27 1 2.0080 1.7916 1.0121 28 1 1.4104 2.0229 -0.6591 29 1 4.1484 1.1748 0.2933 30 1 3.6954 2.0993 -1.1696 31 1 6.7984 1.2958 -2.4003 32 1 0.9951 -2.4818 -0.9896 33 1 2.6457 -2.4299 -0.3255 34 1 0.6709 -2.6183 -3.4814 35 1 1.5991 -3.5804 -5.5496 36 1 5.3727 -3.8707 -3.8464 37 1 4.5561 -2.9253 -1.7240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:06 Heat of formation + Delta-G solvation = 31.767400 kcal Electronic energy + Delta-G solvation = -18431.886029 eV Core-core repulsion = 15787.583698 eV Total energy + Delta-G solvation = -2644.302331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66121 -38.18994 -33.61294 -33.12201 -30.63652 -30.50926 -29.22131 -26.44020 -24.64673 -23.48119 -22.87775 -21.38095 -20.02443 -19.03107 -16.46633 -15.99022 -15.59664 -15.05116 -14.77055 -14.71625 -14.15027 -13.74797 -13.24599 -13.10575 -12.87311 -12.61869 -12.12370 -11.96754 -11.63932 -11.09826 -11.02374 -10.87730 -10.72817 -10.53887 -10.48650 -10.25119 -9.82064 -9.27610 -8.91608 -8.76565 -8.71934 -8.49636 -8.37151 -7.88416 -6.01937 -4.03822 1.77591 1.92792 3.32184 3.36382 3.42022 4.37357 4.45058 4.71211 5.01295 5.26777 5.31524 5.38409 5.58038 5.63447 5.69375 5.79279 5.81908 5.91944 6.05435 6.09365 6.14997 6.17034 6.26321 6.35475 6.37878 6.58279 6.64124 6.74832 7.03498 7.09174 7.16162 7.33979 7.49276 7.64890 7.68682 7.84868 7.97706 8.44323 8.55497 8.97045 9.60083 11.07245 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.012749 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.480154 B = 2195.647242 C = 3581.336056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.518 5.518 3 C 0.032 3.968 4 C -0.097 4.097 5 C 0.060 3.940 6 H 0.036 0.964 7 C -0.503 4.503 8 H 0.049 0.951 9 C 0.069 3.931 10 N -0.887 5.887 11 Si 0.878 3.122 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.071 3.929 16 H 0.045 0.955 17 C -0.062 4.062 18 C -0.009 4.009 19 C -0.174 4.174 20 C 0.086 3.914 21 N -0.497 5.497 22 C 0.095 3.905 23 C -0.130 4.130 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -5.071 1.961 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.242 5.242 3 C -0.096 4.096 4 C -0.136 4.136 5 C 0.041 3.959 6 H 0.055 0.945 7 C -0.541 4.541 8 H 0.067 0.933 9 C -0.133 4.133 10 N -0.525 5.525 11 Si 0.706 3.294 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.037 4.037 16 H 0.063 0.937 17 C -0.099 4.099 18 C -0.018 4.018 19 C -0.194 4.194 20 C -0.071 4.071 21 N -0.207 5.207 22 C -0.061 4.061 23 C -0.150 4.150 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.037 -5.651 1.701 9.184 hybrid contribution -0.366 1.327 -0.981 1.690 sum -7.404 -4.324 0.720 8.604 Atomic orbital electron populations 1.22463 0.90017 1.01105 0.99836 1.65253 1.06342 1.16119 1.36477 1.23162 0.98302 0.88859 0.99248 1.22270 0.91341 1.01418 0.98544 1.19377 0.88599 0.92551 0.95344 0.94548 1.20995 0.98433 1.43030 0.91679 0.93255 1.24846 0.96413 0.95611 0.96444 1.69954 1.05792 1.45044 1.31715 0.86866 0.77395 0.78876 0.86273 1.20492 1.21321 1.20046 1.22861 0.99681 0.91955 0.89164 0.93672 1.20473 1.00031 0.95596 0.93847 1.20065 0.93568 0.92756 0.95418 1.21841 1.00671 1.02391 0.94496 1.22461 0.91857 0.96053 0.96689 1.67550 1.04436 1.17869 1.30840 1.22547 0.98907 0.95826 0.88803 1.21913 0.95529 0.97995 0.99533 0.92083 0.92278 0.96036 0.91987 0.95063 0.93566 0.91603 0.93055 0.92227 0.90509 0.86009 0.83912 0.83636 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.41 60.07 0.57 0.79 16 2 N -0.52 -9.50 5.34 -230.34 -1.23 -10.73 16 3 C 0.03 0.61 6.49 -2.18 -0.01 0.60 16 4 C -0.10 -2.21 5.86 -25.35 -0.15 -2.36 16 5 C 0.06 1.41 1.87 -90.39 -0.17 1.24 16 6 H 0.04 0.93 7.31 -51.93 -0.38 0.55 16 7 C -0.50 -13.06 7.32 -34.44 -0.25 -13.31 16 8 H 0.05 1.33 7.56 -52.49 -0.40 0.93 16 9 C 0.07 1.85 5.14 -17.82 -0.09 1.76 16 10 N -0.89 -24.65 12.59 55.43 0.70 -23.95 16 11 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.07 1.41 1.89 -66.07 -0.12 1.29 16 16 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 17 C -0.06 -1.07 5.03 -27.88 -0.14 -1.21 16 18 C -0.01 -0.17 4.29 -104.32 -0.45 -0.62 16 19 C -0.17 -2.91 9.84 -39.44 -0.39 -3.30 16 20 C 0.09 1.46 11.18 -17.55 -0.20 1.27 16 21 N -0.50 -9.40 10.36 -13.25 -0.14 -9.54 16 22 C 0.10 1.76 11.18 -17.55 -0.20 1.56 16 23 C -0.13 -2.42 8.77 -39.44 -0.35 -2.76 16 24 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.32 7.97 -51.93 -0.41 -0.09 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.59 7.99 -51.93 -0.41 0.17 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.64 7.43 -51.93 -0.39 1.26 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 0.91 7.50 -51.93 -0.39 0.52 16 33 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 34 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.15 2.36 8.06 -52.48 -0.42 1.93 16 37 H 0.13 2.40 7.83 -52.48 -0.41 1.99 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -28.60 300.89 -8.76 -37.36 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.66 Total: 0.93 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.95 Total: -15.05 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.67 Total: -44.22 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.60 -8.76 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.125 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds