Wall clock time and date at job start Mon Mar 30 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.48558 * 110.99962 * 2 1 4 4 C 1.54382 * 104.59386 * 200.96319 * 3 2 1 5 5 C 1.54259 * 105.05872 * 23.85241 * 4 3 2 6 6 H 1.08999 * 110.32520 * 241.10079 * 5 4 3 7 7 C 1.50701 * 110.32213 * 118.89766 * 5 4 3 8 8 H 1.08000 * 120.00465 * 244.36406 * 7 5 4 9 9 C 1.37882 * 119.99997 * 64.35801 * 7 5 4 10 10 N 1.31511 * 119.99961 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00149 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46776 * 60.00295 * 11 9 7 13 13 H 1.48499 * 109.47272 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47057 * 300.00471 * 11 9 7 15 15 C 1.48560 * 110.99746 * 244.58622 * 2 1 3 16 16 H 1.09005 * 110.51547 * 40.20553 * 15 2 1 17 17 C 1.53007 * 110.41013 * 277.81674 * 15 2 1 18 18 C 1.50693 * 109.47419 * 179.63070 * 17 15 2 19 19 C 1.38656 * 120.78989 * 276.43004 * 18 17 15 20 20 C 1.38202 * 119.16052 * 180.21707 * 19 18 17 21 21 N 1.31871 * 120.76752 * 359.47819 * 20 19 18 22 22 C 1.31875 * 121.72103 * 0.27182 * 21 20 19 23 23 C 1.38201 * 120.76518 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47166 * 181.00305 * 1 2 3 25 25 H 1.09001 * 109.46883 * 300.99927 * 1 2 3 26 26 H 1.08996 * 109.47309 * 61.00283 * 1 2 3 27 27 H 1.09005 * 110.41266 * 82.18236 * 3 2 1 28 28 H 1.09002 * 110.51141 * 319.79252 * 3 2 1 29 29 H 1.08996 * 110.32191 * 264.95659 * 4 3 2 30 30 H 1.08998 * 110.40735 * 142.79627 * 4 3 2 31 31 H 0.97000 * 119.99904 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46868 * 59.63256 * 17 15 2 33 33 H 1.08998 * 109.46931 * 299.63315 * 17 15 2 34 34 H 1.08001 * 120.42066 * 359.97438 * 19 18 17 35 35 H 1.07998 * 119.61777 * 179.74823 * 20 19 18 36 36 H 1.08005 * 119.61213 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.41728 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1483 -0.7693 -0.9353 7 6 3.7894 0.2356 -2.7965 8 1 3.0615 0.0562 -3.5739 9 6 5.0354 0.7297 -3.1196 10 7 5.9220 0.9478 -2.1730 11 14 5.4648 1.0879 -4.9019 12 1 4.5251 2.1025 -5.4431 13 1 6.8539 1.6065 -4.9819 14 1 5.3566 -0.1612 -5.6977 15 6 2.0014 -0.5952 -1.2527 16 1 1.4104 -0.2729 -2.1101 17 6 2.0105 -2.1222 -1.1561 18 6 2.5451 -2.7036 -2.4395 19 6 1.7151 -2.8889 -3.5346 20 6 2.2398 -3.4291 -4.6935 21 7 3.5149 -3.7569 -4.7679 22 6 4.3344 -3.5899 -3.7482 23 6 3.8799 -3.0600 -2.5555 24 1 -0.3633 -1.0275 0.0180 25 1 -0.3633 0.5293 0.8809 26 1 -0.3634 0.4981 -0.8988 27 1 2.0080 1.7916 1.0121 28 1 1.4104 2.0229 -0.6591 29 1 4.1484 1.1748 0.2933 30 1 3.6954 2.0993 -1.1696 31 1 6.7984 1.2958 -2.4003 32 1 0.9951 -2.4818 -0.9896 33 1 2.6457 -2.4299 -0.3255 34 1 0.6709 -2.6183 -3.4814 35 1 1.5991 -3.5804 -5.5496 36 1 5.3727 -3.8707 -3.8464 37 1 4.5561 -2.9253 -1.7240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:06 Heat of formation + Delta-G solvation = 14.511760 kcal Electronic energy + Delta-G solvation = -18432.634289 eV Core-core repulsion = 15787.583698 eV Total energy + Delta-G solvation = -2645.050591 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06473 -39.73324 -35.14973 -34.91715 -32.32127 -31.91987 -30.72931 -28.17981 -26.06380 -25.24428 -24.24586 -22.81874 -21.67455 -20.67568 -18.38123 -17.40875 -17.03813 -16.66699 -16.40811 -16.22635 -15.84332 -15.19427 -14.63454 -14.46343 -14.42925 -14.18282 -13.79704 -13.37251 -13.22002 -12.96074 -12.72917 -12.50480 -12.29740 -12.23081 -12.04514 -11.95254 -11.67719 -10.97782 -10.76340 -10.45315 -10.28558 -10.15946 -9.86860 -9.33362 -8.10493 -6.15168 0.41193 0.53304 1.34071 1.37487 1.42400 2.40804 2.99406 3.22555 3.29361 3.72292 3.92790 4.00954 4.14877 4.25374 4.38867 4.41346 4.44194 4.47854 4.61682 4.73005 4.74159 4.79219 4.88324 5.01024 5.03697 5.08272 5.10559 5.26198 5.35944 5.38964 5.65005 5.68062 5.78343 5.91676 5.99304 6.02780 6.31516 6.46202 6.92197 7.18087 7.50202 8.98364 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.012749 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.480154 B = 2195.647242 C = 3581.336056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.041 3.959 4 C -0.095 4.095 5 C 0.058 3.942 6 H 0.009 0.991 7 C -0.496 4.496 8 H 0.039 0.961 9 C 0.028 3.972 10 N -0.912 5.912 11 Si 0.925 3.075 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.281 1.281 15 C 0.083 3.917 16 H 0.034 0.966 17 C -0.054 4.054 18 C -0.021 4.021 19 C -0.173 4.173 20 C 0.080 3.920 21 N -0.518 5.518 22 C 0.080 3.920 23 C -0.147 4.147 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.258 0.742 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -5.343 1.894 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.246 5.246 3 C -0.087 4.087 4 C -0.134 4.134 5 C 0.039 3.961 6 H 0.027 0.973 7 C -0.535 4.535 8 H 0.057 0.943 9 C -0.171 4.171 10 N -0.552 5.552 11 Si 0.752 3.248 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.207 1.207 15 C -0.025 4.025 16 H 0.052 0.948 17 C -0.092 4.092 18 C -0.030 4.030 19 C -0.192 4.192 20 C -0.076 4.076 21 N -0.228 5.228 22 C -0.076 4.076 23 C -0.167 4.167 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.174 0.826 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.364 -5.922 1.634 11.199 hybrid contribution 0.324 1.404 -0.960 1.731 sum -9.040 -4.518 0.674 10.128 Atomic orbital electron populations 1.22578 0.87259 1.02804 1.00832 1.65264 1.08897 1.15175 1.35244 1.23060 0.95527 0.89801 1.00284 1.22106 0.93880 0.99913 0.97515 1.19279 0.90684 0.92380 0.93781 0.97320 1.21147 0.97889 1.41733 0.92728 0.94270 1.25382 0.96730 0.96072 0.98957 1.70046 1.05963 1.46266 1.32944 0.86124 0.77261 0.78293 0.83080 1.20063 1.21096 1.20733 1.22609 0.96807 0.93520 0.89613 0.94758 1.20410 1.01634 0.93695 0.93417 1.20261 0.93492 0.92934 0.96314 1.22172 1.01938 1.01399 0.93729 1.23064 0.91578 0.95048 0.97934 1.67593 1.05507 1.18667 1.31011 1.22786 0.99718 0.96167 0.88881 1.21964 0.96190 0.99014 0.99535 0.90135 0.90300 0.95935 0.89841 0.94650 0.95046 0.94527 0.93316 0.89202 0.91034 0.83058 0.80679 0.82562 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.41 127.69 1.20 1.56 16 2 N -0.52 -17.81 5.34 -882.66 -4.71 -22.53 16 3 C 0.04 1.50 6.49 86.45 0.56 2.06 16 4 C -0.10 -4.39 5.86 31.49 0.18 -4.21 16 5 C 0.06 2.73 1.87 -10.65 -0.02 2.71 16 6 H 0.01 0.46 7.31 -2.39 -0.02 0.44 16 7 C -0.50 -26.00 7.32 25.60 0.19 -25.81 16 8 H 0.04 2.10 7.56 -2.91 -0.02 2.08 16 9 C 0.03 1.51 5.14 84.66 0.44 1.95 16 10 N -0.91 -51.94 12.59 21.45 0.27 -51.67 16 11 Si 0.92 44.45 29.54 68.60 2.03 46.48 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 15 C 0.08 3.15 1.89 45.06 0.09 3.23 16 16 H 0.03 1.39 7.44 -2.38 -0.02 1.37 16 17 C -0.05 -1.77 5.03 29.85 0.15 -1.62 16 18 C -0.02 -0.74 4.29 -19.67 -0.08 -0.83 16 19 C -0.17 -5.35 9.84 22.36 0.22 -5.13 16 20 C 0.08 2.55 11.18 84.68 0.95 3.50 16 21 N -0.52 -19.08 10.36 -195.84 -2.03 -21.11 16 22 C 0.08 2.96 11.18 84.68 0.95 3.91 16 23 C -0.15 -5.53 8.77 22.36 0.20 -5.33 16 24 H 0.08 1.79 7.53 -2.39 -0.02 1.77 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.02 0.58 7.97 -2.39 -0.02 0.57 16 27 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.04 1.26 7.99 -2.39 -0.02 1.24 16 29 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.86 7.43 -2.39 -0.02 1.84 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.09 2.40 7.50 -2.38 -0.02 2.38 16 33 H 0.07 2.42 8.00 -2.39 -0.02 2.40 16 34 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.16 5.17 8.06 -2.91 -0.02 5.14 16 37 H 0.12 4.67 7.83 -2.91 -0.02 4.65 16 Total: -1.00 -61.38 300.89 1.59 -59.78 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.03 Total: 13.06 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 5.01 Total: -24.01 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -6.47 Total: -95.31 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -61.38 1.59 -59.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.294 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds