Wall clock time and date at job start Mon Mar 30 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48529 * 111.00073 * 2 1 4 4 C 1.54943 * 103.23110 * 159.72217 * 3 2 1 5 5 C 1.54593 * 102.91873 * 322.58517 * 4 3 2 6 6 H 1.09001 * 110.39100 * 262.99893 * 5 4 3 7 7 C 1.50700 * 110.31274 * 140.87331 * 5 4 3 8 8 H 1.08003 * 119.99940 * 244.28523 * 7 5 4 9 9 C 1.37876 * 119.99963 * 64.27637 * 7 5 4 10 10 N 1.31512 * 119.99843 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99976 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46763 * 60.00787 * 11 9 7 13 13 H 1.48505 * 109.47108 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47487 * 300.00707 * 11 9 7 15 15 C 1.47906 * 111.00163 * 117.39310 * 2 1 3 16 16 H 1.09004 * 109.91554 * 333.51082 * 15 2 1 17 17 C 1.53003 * 109.91763 * 94.80168 * 15 2 1 18 18 C 1.50697 * 109.47002 * 292.58977 * 17 15 2 19 19 C 1.38649 * 120.79205 * 269.71629 * 18 17 15 20 20 C 1.38209 * 119.16176 * 179.79775 * 19 18 17 21 21 N 1.31870 * 120.76209 * 0.49344 * 20 19 18 22 22 C 1.31867 * 121.72744 * 359.73688 * 21 20 19 23 23 C 1.38202 * 120.76604 * 0.02754 * 22 21 20 24 24 H 1.09001 * 109.46952 * 302.60407 * 1 2 3 25 25 H 1.08997 * 109.47040 * 62.60361 * 1 2 3 26 26 H 1.09000 * 109.47148 * 182.60868 * 1 2 3 27 27 H 1.08995 * 110.67216 * 41.28703 * 3 2 1 28 28 H 1.09004 * 110.66395 * 278.15418 * 3 2 1 29 29 H 1.08999 * 110.72722 * 204.22642 * 4 3 2 30 30 H 1.09004 * 110.87493 * 81.01227 * 4 3 2 31 31 H 0.96999 * 119.99895 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.47035 * 52.59074 * 17 15 2 33 33 H 1.09001 * 109.46975 * 172.58921 * 17 15 2 34 34 H 1.07993 * 120.41927 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.61624 * 180.25042 * 20 19 18 36 36 H 1.08005 * 119.61992 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.41745 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1054 1.5930 6 1 3.2143 0.5472 2.5860 7 6 4.4717 -0.8387 1.5391 8 1 4.3203 -1.8735 1.2696 9 6 5.7386 -0.3813 1.8337 10 7 5.9229 0.8787 2.1622 11 14 7.1929 -1.5517 1.7676 12 1 7.3213 -2.1046 0.3953 13 1 8.4344 -0.8192 2.1247 14 1 6.9793 -2.6617 2.7306 15 6 1.9990 -0.6353 1.2260 16 1 1.2758 -0.5402 2.0359 17 6 2.2983 -2.1121 0.9602 18 6 1.0068 -2.8514 0.7228 19 6 0.3171 -3.4317 1.7764 20 6 -0.8663 -4.0982 1.5210 21 7 -1.3349 -4.1937 0.2920 22 6 -0.7035 -3.6584 -0.7345 23 6 0.4829 -2.9727 -0.5552 24 1 -0.3633 0.5537 0.8657 25 1 -0.3633 0.4729 -0.9124 26 1 -0.3633 -1.0266 0.0468 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.7976 -1.0096 29 1 3.8123 2.1352 0.9715 30 1 4.1140 0.8848 -0.2772 31 1 6.8141 1.2004 2.3698 32 1 2.9350 -2.2010 0.0799 33 1 2.8089 -2.5403 1.8227 34 1 0.6980 -3.3605 2.7845 35 1 -1.4116 -4.5494 2.3367 36 1 -1.1184 -3.7569 -1.7268 37 1 0.9956 -2.5369 -1.4000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:08 Heat of formation + Delta-G solvation = 40.944441 kcal Electronic energy + Delta-G solvation = -18206.236658 eV Core-core repulsion = 15562.332274 eV Total energy + Delta-G solvation = -2643.904384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03931 -38.27322 -33.60104 -33.25713 -31.01532 -30.61161 -29.42092 -26.19011 -24.66355 -23.69067 -23.13182 -21.65035 -20.04414 -19.04883 -16.72834 -15.99510 -15.59420 -15.28480 -15.03434 -14.62280 -14.35465 -13.89797 -13.49438 -13.21533 -12.78059 -12.56059 -12.29952 -11.85979 -11.61597 -11.37103 -11.16113 -10.93252 -10.68531 -10.49994 -10.33917 -10.16474 -9.72191 -9.47129 -9.18060 -9.02176 -8.84472 -8.56205 -8.43106 -7.75598 -6.04668 -4.06833 1.40809 1.60115 3.29906 3.35209 3.37475 4.10016 4.41184 4.67320 4.69551 5.09454 5.15460 5.28983 5.44402 5.48950 5.61592 5.73618 5.81570 5.91039 5.97057 6.02418 6.08857 6.17070 6.23293 6.30804 6.38106 6.41349 6.67170 6.86577 6.92908 7.02837 7.11917 7.16929 7.43407 7.58195 7.78543 7.86069 7.98832 8.20550 8.37398 8.93173 9.57720 11.05556 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.007385 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.158138 B = 3790.504809 C = 4547.763805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.513 5.513 3 C 0.028 3.972 4 C -0.092 4.092 5 C 0.046 3.954 6 H 0.031 0.969 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.083 3.917 16 H 0.030 0.970 17 C -0.057 4.057 18 C -0.023 4.023 19 C -0.179 4.179 20 C 0.089 3.911 21 N -0.501 5.501 22 C 0.085 3.915 23 C -0.156 4.156 24 H 0.015 0.985 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -4.244 -2.960 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.237 5.237 3 C -0.100 4.100 4 C -0.130 4.130 5 C 0.027 3.973 6 H 0.049 0.951 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.528 5.528 11 Si 0.715 3.285 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.026 4.026 16 H 0.048 0.952 17 C -0.095 4.095 18 C -0.031 4.031 19 C -0.199 4.199 20 C -0.068 4.068 21 N -0.211 5.211 22 C -0.071 4.071 23 C -0.176 4.176 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.087 -4.845 -3.518 11.730 hybrid contribution 1.279 0.455 0.874 1.615 sum -8.808 -4.390 -2.643 10.190 Atomic orbital electron populations 1.22663 0.89982 1.01588 0.99533 1.64605 1.05910 1.15203 1.38020 1.23346 0.98255 0.88994 0.99378 1.22411 0.91644 0.99781 0.99206 1.19502 0.90284 0.92889 0.94605 0.95128 1.21409 0.91277 0.96319 1.46706 0.91032 1.24992 0.98857 0.94954 0.95062 1.69961 1.22250 1.14150 1.46453 0.86733 0.82125 0.81061 0.78544 1.20227 1.21441 1.20320 1.22409 0.97784 0.93455 0.88923 0.95236 1.20880 0.90966 0.93723 1.03913 1.20931 0.96901 0.92670 0.92613 1.22122 0.97029 1.00400 1.00322 1.22611 0.93703 0.96380 0.94098 1.67600 1.33945 1.19645 0.99876 1.22667 0.92561 0.94298 0.97622 1.22123 0.97324 0.99848 0.98309 0.96630 0.92439 0.91463 0.95361 0.91778 0.92328 0.91889 0.93052 0.89270 0.89413 0.85156 0.83519 0.83481 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.93 60.06 0.54 0.72 16 2 N -0.51 -9.41 4.97 -230.78 -1.15 -10.56 16 3 C 0.03 0.52 6.56 -1.90 -0.01 0.51 16 4 C -0.09 -2.06 5.75 -24.87 -0.14 -2.20 16 5 C 0.05 1.08 2.87 -90.41 -0.26 0.82 16 6 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.52 -13.13 7.50 -34.44 -0.26 -13.39 16 8 H 0.07 1.73 4.70 -52.48 -0.25 1.49 16 9 C 0.06 1.67 5.34 -17.82 -0.10 1.58 16 10 N -0.89 -24.67 12.63 55.43 0.70 -23.97 16 11 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.08 1.63 2.59 -66.64 -0.17 1.46 16 16 H 0.03 0.59 7.73 -51.93 -0.40 0.18 16 17 C -0.06 -1.05 3.55 -27.88 -0.10 -1.15 16 18 C -0.02 -0.37 4.01 -104.32 -0.42 -0.79 16 19 C -0.18 -2.60 9.82 -39.44 -0.39 -2.99 16 20 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 21 N -0.50 -7.46 10.36 -13.25 -0.14 -7.60 16 22 C 0.08 1.17 11.18 -17.55 -0.20 0.97 16 23 C -0.16 -2.29 7.26 -39.44 -0.29 -2.58 16 24 H 0.02 0.25 8.00 -51.93 -0.42 -0.17 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.06 4.59 -51.93 -0.24 0.82 16 27 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 30 H 0.06 1.52 7.86 -51.93 -0.41 1.11 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.09 1.75 7.32 -51.93 -0.38 1.37 16 33 H 0.09 1.66 6.82 -51.93 -0.35 1.31 16 34 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -27.40 293.43 -8.55 -35.95 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.37 Total: 2.24 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.99 Total: -16.01 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.59 Total: -42.12 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.40 -8.55 -35.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.891 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds