Wall clock time and date at job start Mon Mar 30 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48529 * 111.00073 * 2 1 4 4 C 1.54943 * 103.23110 * 159.72217 * 3 2 1 5 5 C 1.54593 * 102.91873 * 322.58517 * 4 3 2 6 6 H 1.09001 * 110.39100 * 262.99893 * 5 4 3 7 7 C 1.50700 * 110.31274 * 140.87331 * 5 4 3 8 8 H 1.08003 * 119.99940 * 244.28523 * 7 5 4 9 9 C 1.37876 * 119.99963 * 64.27637 * 7 5 4 10 10 N 1.31512 * 119.99843 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99976 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46763 * 60.00787 * 11 9 7 13 13 H 1.48505 * 109.47108 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47487 * 300.00707 * 11 9 7 15 15 C 1.47906 * 111.00163 * 117.39310 * 2 1 3 16 16 H 1.09004 * 109.91554 * 333.51082 * 15 2 1 17 17 C 1.53003 * 109.91763 * 94.80168 * 15 2 1 18 18 C 1.50697 * 109.47002 * 292.58977 * 17 15 2 19 19 C 1.38649 * 120.79205 * 269.71629 * 18 17 15 20 20 C 1.38209 * 119.16176 * 179.79775 * 19 18 17 21 21 N 1.31870 * 120.76209 * 0.49344 * 20 19 18 22 22 C 1.31867 * 121.72744 * 359.73688 * 21 20 19 23 23 C 1.38202 * 120.76604 * 0.02754 * 22 21 20 24 24 H 1.09001 * 109.46952 * 302.60407 * 1 2 3 25 25 H 1.08997 * 109.47040 * 62.60361 * 1 2 3 26 26 H 1.09000 * 109.47148 * 182.60868 * 1 2 3 27 27 H 1.08995 * 110.67216 * 41.28703 * 3 2 1 28 28 H 1.09004 * 110.66395 * 278.15418 * 3 2 1 29 29 H 1.08999 * 110.72722 * 204.22642 * 4 3 2 30 30 H 1.09004 * 110.87493 * 81.01227 * 4 3 2 31 31 H 0.96999 * 119.99895 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.47035 * 52.59074 * 17 15 2 33 33 H 1.09001 * 109.46975 * 172.58921 * 17 15 2 34 34 H 1.07993 * 120.41927 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.61624 * 180.25042 * 20 19 18 36 36 H 1.08005 * 119.61992 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.41745 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1054 1.5930 6 1 3.2143 0.5472 2.5860 7 6 4.4717 -0.8387 1.5391 8 1 4.3203 -1.8735 1.2696 9 6 5.7386 -0.3813 1.8337 10 7 5.9229 0.8787 2.1622 11 14 7.1929 -1.5517 1.7676 12 1 7.3213 -2.1046 0.3953 13 1 8.4344 -0.8192 2.1247 14 1 6.9793 -2.6617 2.7306 15 6 1.9990 -0.6353 1.2260 16 1 1.2758 -0.5402 2.0359 17 6 2.2983 -2.1121 0.9602 18 6 1.0068 -2.8514 0.7228 19 6 0.3171 -3.4317 1.7764 20 6 -0.8663 -4.0982 1.5210 21 7 -1.3349 -4.1937 0.2920 22 6 -0.7035 -3.6584 -0.7345 23 6 0.4829 -2.9727 -0.5552 24 1 -0.3633 0.5537 0.8657 25 1 -0.3633 0.4729 -0.9124 26 1 -0.3633 -1.0266 0.0468 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.7976 -1.0096 29 1 3.8123 2.1352 0.9715 30 1 4.1140 0.8848 -0.2772 31 1 6.8141 1.2004 2.3698 32 1 2.9350 -2.2010 0.0799 33 1 2.8089 -2.5403 1.8227 34 1 0.6980 -3.3605 2.7845 35 1 -1.4116 -4.5494 2.3367 36 1 -1.1184 -3.7569 -1.7268 37 1 0.9956 -2.5369 -1.4000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:08 Heat of formation + Delta-G solvation = 24.812677 kcal Electronic energy + Delta-G solvation = -18206.936184 eV Core-core repulsion = 15562.332274 eV Total energy + Delta-G solvation = -2644.603910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24554 -39.78902 -35.13202 -34.89185 -32.52569 -31.94893 -30.89166 -27.86517 -26.18379 -25.38212 -24.23040 -22.90247 -21.71514 -20.76587 -18.29832 -17.21167 -17.09387 -16.72631 -16.37714 -16.27622 -15.94409 -15.31463 -14.65730 -14.50086 -14.35027 -14.07916 -13.73898 -13.50644 -13.25231 -12.88438 -12.69290 -12.48203 -12.41952 -12.10598 -11.92842 -11.81116 -11.55668 -11.16576 -10.76647 -10.45433 -10.29464 -10.12754 -9.91013 -9.23807 -8.08014 -6.14552 0.32818 0.43232 1.44837 1.45564 1.51959 2.46731 2.98843 3.20810 3.25174 3.68750 3.83816 4.02479 4.18246 4.22294 4.34357 4.37304 4.39035 4.46407 4.57867 4.68050 4.78621 4.82222 4.87753 4.93572 4.99433 5.07378 5.16965 5.25281 5.35398 5.47017 5.60209 5.67426 5.73760 5.88817 5.92105 6.19270 6.30453 6.41890 6.93316 7.12428 7.52727 9.02061 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.007385 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.158138 B = 3790.504809 C = 4547.763805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.514 5.514 3 C 0.038 3.962 4 C -0.085 4.085 5 C 0.037 3.963 6 H -0.005 1.005 7 C -0.523 4.523 8 H 0.081 0.919 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.946 3.054 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.270 1.270 15 C 0.092 3.908 16 H 0.028 0.972 17 C -0.045 4.045 18 C -0.037 4.037 19 C -0.184 4.184 20 C 0.091 3.909 21 N -0.514 5.514 22 C 0.088 3.912 23 C -0.157 4.157 24 H 0.015 0.985 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.257 0.743 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -5.585 -3.892 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.238 5.238 3 C -0.089 4.089 4 C -0.124 4.124 5 C 0.018 3.982 6 H 0.014 0.986 7 C -0.561 4.561 8 H 0.098 0.902 9 C -0.187 4.187 10 N -0.563 5.563 11 Si 0.772 3.228 12 H -0.197 1.197 13 H -0.218 1.218 14 H -0.195 1.195 15 C -0.016 4.016 16 H 0.046 0.954 17 C -0.083 4.083 18 C -0.045 4.045 19 C -0.203 4.203 20 C -0.066 4.066 21 N -0.224 5.224 22 C -0.068 4.068 23 C -0.177 4.177 24 H 0.034 0.966 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.192 0.808 36 H 0.193 0.807 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.753 -6.202 -4.454 14.015 hybrid contribution 1.735 0.868 1.178 2.269 sum -10.018 -5.333 -3.276 11.812 Atomic orbital electron populations 1.22692 0.87893 1.02183 1.00584 1.64618 1.07780 1.14555 1.36881 1.23255 0.95491 0.89670 1.00518 1.22176 0.93875 0.98253 0.98078 1.19483 0.92102 0.93424 0.93212 0.98641 1.21822 0.91865 0.97044 1.45337 0.90156 1.25735 1.01484 0.96244 0.95221 1.70099 1.22445 1.15787 1.48018 0.85792 0.78980 0.79268 0.78725 1.19668 1.21754 1.19538 1.22190 0.95650 0.94176 0.89621 0.95398 1.20570 0.92266 0.92990 1.02469 1.20708 0.96181 0.93754 0.93885 1.22256 0.97343 1.00321 1.00422 1.23034 0.93315 0.95610 0.94624 1.67692 1.34329 1.19940 1.00432 1.23075 0.91909 0.93132 0.98655 1.22147 0.97727 1.00088 0.97731 0.96646 0.90322 0.91021 0.94570 0.89624 0.94535 0.94060 0.93425 0.90917 0.90730 0.84355 0.80762 0.80724 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 8.93 127.69 1.14 1.57 16 2 N -0.51 -18.12 4.97 -884.06 -4.40 -22.52 16 3 C 0.04 1.40 6.56 86.65 0.57 1.97 16 4 C -0.09 -3.92 5.75 31.80 0.18 -3.73 16 5 C 0.04 1.78 2.87 -10.66 -0.03 1.75 16 6 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 7 C -0.52 -27.02 7.50 25.60 0.19 -26.82 16 8 H 0.08 3.93 4.70 -2.91 -0.01 3.92 16 9 C 0.01 0.62 5.34 84.65 0.45 1.07 16 10 N -0.92 -52.89 12.63 21.45 0.27 -52.62 16 11 Si 0.95 42.66 29.54 68.60 2.03 44.68 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 C 0.09 3.62 2.59 45.06 0.12 3.74 16 16 H 0.03 1.10 7.73 -2.38 -0.02 1.08 16 17 C -0.05 -1.64 3.55 29.85 0.11 -1.53 16 18 C -0.04 -1.13 4.01 -19.67 -0.08 -1.20 16 19 C -0.18 -4.97 9.82 22.36 0.22 -4.76 16 20 C 0.09 2.23 11.18 84.68 0.95 3.18 16 21 N -0.51 -13.71 10.36 -195.84 -2.03 -15.74 16 22 C 0.09 2.16 11.18 84.68 0.95 3.10 16 23 C -0.16 -4.24 7.26 22.36 0.16 -4.08 16 24 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 2.05 4.59 -2.39 -0.01 2.04 16 27 H 0.04 1.27 7.96 -2.39 -0.02 1.25 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 30 H 0.04 2.04 7.86 -2.39 -0.02 2.02 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.07 2.85 7.32 -2.39 -0.02 2.83 16 33 H 0.07 2.85 6.82 -2.39 -0.02 2.83 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -59.06 293.43 1.84 -57.22 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.05 Total: 14.73 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.92 Total: -25.75 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -6.16 Total: -90.88 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -59.06 1.84 -57.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.033 kcal (2) G-P(sol) polarization free energy of solvation -59.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds