Wall clock time and date at job start Mon Mar 30 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.81366 * 2 1 4 4 C 1.53248 * 109.59602 * 239.49729 * 2 1 3 5 5 C 1.52768 * 108.34219 * 170.46558 * 4 2 1 6 6 C 1.50490 * 110.56153 * 50.85477 * 5 4 2 7 7 C 1.39185 * 117.97520 * 162.72960 * 6 5 4 8 8 C 1.38408 * 118.86754 * 179.43362 * 7 6 5 9 9 C 1.38245 * 118.84097 * 0.02562 * 8 7 6 10 10 N 1.31515 * 120.61184 * 0.14941 * 9 8 7 11 11 C 1.32705 * 122.39725 * 359.94276 * 10 9 8 12 12 C 1.50721 * 117.56053 * 179.74718 * 11 10 9 13 13 C 1.50697 * 109.25697 * 282.39783 * 12 11 10 14 14 H 1.08002 * 120.00350 * 154.38713 * 13 12 11 15 15 C 1.37875 * 120.00177 * 334.38584 * 13 12 11 16 16 N 1.31524 * 119.99889 * 348.75014 * 15 13 12 17 17 Si 1.86799 * 120.00330 * 168.74661 * 15 13 12 18 18 H 1.48504 * 109.47202 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47261 * 300.00615 * 17 15 13 20 20 H 1.48503 * 109.46904 * 60.00491 * 17 15 13 21 21 C 1.53000 * 109.25919 * 41.87598 * 12 11 10 22 22 N 1.46902 * 109.46732 * 295.40763 * 21 12 11 23 23 H 1.08992 * 109.46982 * 299.47771 * 1 2 3 24 24 H 1.08999 * 109.46730 * 59.47665 * 1 2 3 25 25 H 1.08997 * 109.46933 * 179.47588 * 1 2 3 26 26 H 1.08997 * 109.70022 * 50.74856 * 4 2 1 27 27 H 1.08998 * 109.71798 * 290.18988 * 4 2 1 28 28 H 1.09001 * 109.26006 * 290.57256 * 5 4 2 29 29 H 1.09005 * 109.22585 * 171.11390 * 5 4 2 30 30 H 1.07992 * 120.56731 * 359.40618 * 7 6 5 31 31 H 1.07995 * 120.58007 * 180.02562 * 8 7 6 32 32 H 1.07995 * 119.69325 * 180.11561 * 9 8 7 33 33 H 0.96997 * 119.99878 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.46949 * 55.40971 * 21 12 11 35 35 H 1.08997 * 109.47057 * 175.41294 * 21 12 11 36 36 H 1.00899 * 110.99929 * 174.39982 * 22 21 12 37 37 H 1.00901 * 110.99986 * 298.34602 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0440 -0.7328 -1.2439 5 6 3.5524 -0.5123 -1.3428 6 6 4.2217 -0.8430 -0.0362 7 6 5.5974 -1.0542 -0.0423 8 6 6.2338 -1.3479 1.1512 9 6 5.4804 -1.4218 2.3080 10 7 4.1813 -1.2196 2.2752 11 6 3.5337 -0.9377 1.1517 12 6 2.0431 -0.7322 1.2388 13 6 1.3619 -2.0723 1.3434 14 1 0.3935 -2.1505 1.8151 15 6 1.9749 -3.1986 0.8370 16 7 3.0388 -3.0810 0.0727 17 14 1.2944 -4.8919 1.2363 18 1 2.1277 -5.9286 0.5759 19 1 1.3181 -5.1008 2.7063 20 1 -0.1032 -4.9923 0.7444 21 6 1.7198 0.0968 2.4835 22 7 2.0895 -0.6614 3.6862 23 1 -0.3633 0.5057 0.8946 24 1 -0.3633 0.5219 -0.8853 25 1 -0.3633 -1.0276 -0.0094 26 1 1.5555 -0.3344 -2.1331 27 1 1.8337 -1.7987 -1.1559 28 1 3.7477 0.5305 -1.5930 29 1 3.9581 -1.1521 -2.1266 30 1 6.1587 -0.9904 -0.9627 31 1 7.3001 -1.5163 1.1783 32 1 5.9631 -1.6481 3.2472 33 1 3.4702 -3.8734 -0.2833 34 1 2.2825 1.0298 2.4549 35 1 0.6525 0.3166 2.5064 36 1 1.9711 -0.1015 4.5172 37 1 1.5613 -1.5188 3.7497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260486950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:18 Heat of formation + Delta-G solvation = 42.218517 kcal Electronic energy + Delta-G solvation = -19447.535147 eV Core-core repulsion = 16803.686011 eV Total energy + Delta-G solvation = -2643.849136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56407 -36.59589 -33.78854 -32.15085 -31.26974 -30.20135 -28.54472 -26.30946 -24.56623 -23.43797 -22.01908 -20.89545 -19.76890 -18.51316 -16.43350 -15.21499 -14.86752 -14.59958 -14.27614 -14.18143 -13.58059 -13.06302 -12.84547 -12.51652 -12.35735 -11.95608 -11.71565 -11.55274 -11.29846 -11.08321 -10.91558 -10.77431 -10.55534 -10.40874 -10.01711 -9.79713 -9.22282 -9.12674 -8.91103 -8.36624 -8.12524 -7.80668 -7.40286 -7.04335 -5.75350 -4.04563 2.67593 2.78271 3.31551 3.37732 3.41396 4.43031 5.19244 5.35610 5.66363 5.79773 5.89789 5.94879 6.07624 6.19476 6.20871 6.23088 6.39663 6.42446 6.54868 6.61592 6.67866 6.75214 6.79140 6.84802 6.96325 7.15221 7.21577 7.26372 7.29944 7.38464 7.56790 7.73997 7.84568 7.95795 8.23558 8.28962 8.48048 8.73433 8.90152 9.54893 9.74904 10.98601 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.013835 C = 0.012449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.829109 B = 2023.396764 C = 2248.639487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.032 0.968 4 C -0.105 4.105 5 C -0.052 4.052 6 C -0.062 4.062 7 C -0.112 4.112 8 C -0.211 4.211 9 C 0.068 3.932 10 N -0.440 5.440 11 C 0.242 3.758 12 C 0.113 3.887 13 C -0.489 4.489 14 H 0.057 0.943 15 C 0.073 3.927 16 N -0.866 5.866 17 Si 0.886 3.114 18 H -0.291 1.291 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.090 3.910 22 N -0.809 5.809 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.259 0.741 34 H 0.035 0.965 35 H 0.006 0.994 36 H 0.306 0.694 37 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 4.659 -0.602 4.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 H 0.050 0.950 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.064 4.064 7 C -0.138 4.138 8 C -0.232 4.232 9 C -0.091 4.091 10 N -0.148 5.148 11 C 0.104 3.896 12 C 0.112 3.888 13 C -0.527 4.527 14 H 0.075 0.925 15 C -0.129 4.129 16 N -0.504 5.504 17 Si 0.714 3.286 18 H -0.217 1.217 19 H -0.203 1.203 20 H -0.207 1.207 21 C -0.042 4.042 22 N -0.337 5.337 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.024 0.976 36 H 0.115 0.885 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.617 4.418 -0.262 4.469 hybrid contribution -0.471 -1.067 -0.431 1.244 sum 0.146 3.351 -0.693 3.425 Atomic orbital electron populations 1.21709 0.96337 1.02084 0.98498 1.21199 0.94846 0.96278 0.97244 0.94967 1.21611 0.93157 1.04733 0.94746 1.20082 0.96779 0.97688 0.94391 1.19975 0.92568 0.97971 0.95929 1.21062 0.94574 1.01288 0.96845 1.21597 0.99313 1.07404 0.94881 1.22300 0.91254 0.99143 0.96353 1.67794 1.07462 1.09711 1.29818 1.20589 0.95146 0.87459 0.86389 1.17260 0.87510 0.94613 0.89438 1.20613 1.03792 0.90291 1.38030 0.92486 1.24880 0.94919 0.98692 0.94374 1.70032 1.20382 1.28359 1.31598 0.86760 0.78458 0.84530 0.78811 1.21708 1.20323 1.20680 1.21660 0.94860 0.95010 0.92625 1.58505 1.65360 1.07896 1.01989 0.94312 0.95253 0.91329 0.95389 0.87286 0.94073 0.92679 0.88018 0.88052 0.85883 0.92993 0.94647 0.97614 0.88467 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.62 37.16 0.32 -2.11 16 2 C -0.08 -1.57 1.96 -90.61 -0.18 -1.75 16 3 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 4 C -0.11 -2.21 4.95 -26.72 -0.13 -2.34 16 5 C -0.05 -1.06 5.44 -28.10 -0.15 -1.21 16 6 C -0.06 -1.40 3.89 -104.61 -0.41 -1.80 16 7 C -0.11 -2.37 9.75 -39.17 -0.38 -2.75 16 8 C -0.21 -4.35 10.12 -39.52 -0.40 -4.75 16 9 C 0.07 1.50 11.19 -17.68 -0.20 1.30 16 10 N -0.44 -10.63 8.09 -9.51 -0.08 -10.71 16 11 C 0.24 5.77 3.54 -82.44 -0.29 5.48 16 12 C 0.11 2.57 0.33 -156.92 -0.05 2.51 16 13 C -0.49 -11.88 4.68 -34.44 -0.16 -12.04 16 14 H 0.06 1.40 7.77 -52.49 -0.41 0.99 16 15 C 0.07 1.85 4.46 -17.82 -0.08 1.77 16 16 N -0.87 -22.22 7.27 55.43 0.40 -21.81 16 17 Si 0.89 20.60 29.55 -169.99 -5.02 15.57 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.09 1.88 5.50 -3.82 -0.02 1.86 16 22 N -0.81 -16.46 7.69 -10.37 -0.08 -16.54 16 23 H 0.04 0.69 6.58 -51.93 -0.34 0.34 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 1.39 6.92 -51.93 -0.36 1.03 16 26 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.11 2.61 5.02 -51.93 -0.26 2.35 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.12 6.47 -51.93 -0.34 -0.22 16 36 H 0.31 5.32 9.08 -39.29 -0.36 4.96 16 37 H 0.34 7.24 7.88 -39.29 -0.31 6.93 16 LS Contribution 279.33 15.07 4.21 4.21 Total: -1.00 -26.56 279.33 -8.01 -34.57 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.31 Total: 10.54 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.13 Total: -15.83 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.25 Total: -49.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.56 -8.01 -34.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.790 kcal (2) G-P(sol) polarization free energy of solvation -26.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds