Wall clock time and date at job start Mon Mar 30 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99947 * 2 1 4 4 H 1.48498 * 109.47188 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 239.99958 * 3 2 1 6 6 H 1.48496 * 109.46880 * 120.00364 * 3 2 1 7 7 C 1.37873 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99850 * 16.62614 * 7 2 1 9 9 C 1.50700 * 120.00455 * 196.62080 * 7 2 1 10 10 H 1.08999 * 109.47024 * 305.66005 * 9 7 2 11 11 C 1.53004 * 109.46406 * 65.65624 * 9 7 2 12 12 N 1.46903 * 109.46586 * 185.86323 * 11 9 7 13 13 C 1.50692 * 109.47592 * 185.65650 * 9 7 2 14 14 C 1.38246 * 120.57812 * 299.72522 * 13 9 7 15 15 N 1.31508 * 120.61117 * 179.85862 * 14 13 9 16 16 C 1.32704 * 122.40004 * 0.59637 * 15 14 13 17 17 C 1.37597 * 120.09797 * 359.50125 * 16 15 14 18 18 C 1.38403 * 120.58085 * 120.00266 * 13 9 7 19 19 C 1.50497 * 122.84935 * 180.44867 * 17 16 15 20 20 C 1.52764 * 110.55520 * 342.48303 * 19 17 16 21 21 C 1.53325 * 108.36205 * 50.83804 * 20 19 17 22 22 C 1.50722 * 117.56570 * 179.33278 * 16 15 14 23 23 H 0.97001 * 120.00417 * 174.16826 * 1 2 3 24 24 H 1.08997 * 109.47714 * 305.86112 * 11 9 7 25 25 H 1.09001 * 109.47060 * 65.86768 * 11 9 7 26 26 H 1.00903 * 110.99689 * 180.02562 * 12 11 9 27 27 H 1.00897 * 111.00566 * 303.95337 * 12 11 9 28 28 H 1.08002 * 119.69487 * 0.12111 * 14 13 9 29 29 H 1.07995 * 120.56984 * 359.85651 * 18 13 9 30 30 H 1.08993 * 109.25846 * 102.75989 * 19 17 16 31 31 H 1.09001 * 109.26094 * 222.20441 * 19 17 16 32 32 H 1.09011 * 109.68615 * 170.55596 * 20 19 17 33 33 H 1.08998 * 109.69123 * 291.11331 * 20 19 17 34 34 H 1.09000 * 109.63864 * 49.81988 * 21 20 19 35 35 H 1.08991 * 109.64106 * 170.45877 * 21 20 19 36 36 H 1.09007 * 109.26028 * 42.01182 * 22 16 15 37 37 H 1.09003 * 109.22535 * 282.55677 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 1.4983 -2.1099 -0.2667 9 6 3.4643 -1.2212 0.3738 10 1 4.0122 -0.5158 -0.2509 11 6 3.6218 -0.8294 1.8444 12 7 5.0497 -0.7192 2.1714 13 6 4.0111 -2.6094 0.1625 14 6 3.4827 -3.6857 0.8507 15 7 3.9576 -4.8979 0.6647 16 6 4.9590 -5.1491 -0.1691 17 6 5.5339 -4.1246 -0.8855 18 6 5.0549 -2.8283 -0.7196 19 6 6.6650 -4.3406 -1.8545 20 6 7.3357 -5.6901 -1.6039 21 6 6.2477 -6.7695 -1.5604 22 6 5.4271 -6.5769 -0.2868 23 1 -0.4851 -0.8357 -0.0854 24 1 3.1340 0.1296 2.0193 25 1 3.1625 -1.5910 2.4746 26 1 5.1804 -0.4616 3.1382 27 1 5.5371 -1.5762 1.9569 28 1 2.6696 -3.5303 1.5443 29 1 5.4900 -2.0074 -1.2702 30 1 6.2761 -4.3159 -2.8723 31 1 7.4003 -3.5453 -1.7318 32 1 8.0364 -5.9072 -2.4102 33 1 7.8666 -5.6653 -0.6523 34 1 5.6000 -6.6722 -2.4317 35 1 6.7106 -7.7562 -1.5524 36 1 4.5610 -7.2382 -0.3139 37 1 6.0421 -6.8255 0.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260497014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:19 Heat of formation + Delta-G solvation = 5.140720 kcal Electronic energy + Delta-G solvation = -17890.597863 eV Core-core repulsion = 15245.140912 eV Total energy + Delta-G solvation = -2645.456950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24873 -36.93308 -35.18940 -32.74425 -32.47225 -30.60720 -29.59699 -27.73537 -23.93422 -23.27486 -22.99867 -22.17858 -20.49308 -18.82062 -17.61737 -16.14089 -15.91618 -15.26343 -15.07601 -14.18736 -13.91163 -13.84028 -13.82166 -13.41445 -13.13580 -12.73631 -12.38048 -12.32119 -12.14343 -11.72811 -11.22134 -11.04584 -10.98194 -10.87344 -10.71250 -10.29307 -10.13749 -9.75480 -9.16223 -8.89314 -8.77267 -8.30342 -8.06850 -7.97976 -6.51877 -4.17288 1.68662 1.87123 3.40444 3.44293 3.61613 4.30134 4.44039 4.56919 4.79068 4.87511 4.98698 5.11691 5.21622 5.39781 5.40873 5.55740 5.57130 5.62372 5.68334 5.78961 5.92185 5.99177 6.01662 6.04701 6.13693 6.23966 6.28595 6.44016 6.48594 6.74958 6.80896 6.97866 7.31677 7.36030 7.68001 7.94499 8.07044 8.30410 8.56177 8.81994 9.52231 10.86396 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032421 B = 0.006277 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.428187 B = 4459.706802 C = 4569.346759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.034 3.966 3 Si 1.045 2.955 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.597 4.597 8 H 0.058 0.942 9 C 0.060 3.940 10 H 0.039 0.961 11 C 0.057 3.943 12 N -0.855 5.855 13 C -0.075 4.075 14 C 0.104 3.896 15 N -0.493 5.493 16 C 0.098 3.902 17 C -0.130 4.130 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.061 4.061 23 H 0.268 0.732 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.327 0.673 27 H 0.329 0.671 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -8.894 -0.908 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.172 4.172 3 Si 0.873 3.127 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.635 4.635 8 H 0.077 0.923 9 C 0.039 3.961 10 H 0.057 0.943 11 C -0.073 4.073 12 N -0.383 5.383 13 C -0.077 4.077 14 C -0.055 4.055 15 N -0.201 5.201 16 C -0.037 4.037 17 C -0.132 4.132 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.099 4.099 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.290 -7.371 -0.923 15.225 hybrid contribution 0.125 -1.669 0.093 1.676 sum 13.415 -9.040 -0.830 16.198 Atomic orbital electron populations 1.70861 1.06865 1.31062 1.44625 1.25817 0.96115 1.02456 0.92813 0.84037 0.75219 0.75553 0.77872 1.21329 1.20932 1.19377 1.21908 0.93057 0.96321 1.52216 0.92340 1.18154 0.97362 0.88108 0.92434 0.94317 1.22533 0.86038 1.00701 0.98018 1.58957 1.13579 1.39535 1.26203 1.21216 0.93285 0.98894 0.94323 1.22515 0.97935 0.86860 0.98236 1.67479 1.10959 1.24276 1.17413 1.20748 0.93435 0.95154 0.94346 1.20313 0.99277 0.93768 0.99803 1.21527 0.96201 0.95944 0.97923 1.20358 0.95197 0.97754 0.97807 1.21550 0.97528 0.94621 1.01895 1.21556 0.97458 0.98658 0.97946 1.20220 0.99753 0.91838 0.98044 0.92132 0.90444 0.96321 0.86278 0.85999 0.83171 0.85547 0.90887 0.90928 0.91601 0.91704 0.91621 0.91392 0.90479 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.69 55.43 0.76 -26.29 16 2 C 0.03 0.95 5.31 -17.82 -0.09 0.85 16 3 Si 1.05 24.86 26.28 -169.99 -4.47 20.39 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -5.96 5.69 56.52 0.32 -5.63 16 7 C -0.60 -16.23 8.56 -34.44 -0.29 -16.52 16 8 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 9 C 0.06 1.37 1.75 -92.93 -0.16 1.21 16 10 H 0.04 0.92 6.60 -51.93 -0.34 0.58 16 11 C 0.06 1.21 5.82 -3.82 -0.02 1.19 16 12 N -0.85 -15.28 9.62 -10.37 -0.10 -15.38 16 13 C -0.08 -1.57 3.81 -104.56 -0.40 -1.96 16 14 C 0.10 2.15 9.82 -17.69 -0.17 1.98 16 15 N -0.49 -9.63 10.19 -9.51 -0.10 -9.73 16 16 C 0.10 1.67 6.62 -82.44 -0.55 1.13 16 17 C -0.13 -2.11 5.74 -104.60 -0.60 -2.71 16 18 C -0.09 -1.66 9.39 -39.17 -0.37 -2.02 16 19 C -0.07 -0.90 5.68 -28.10 -0.16 -1.06 16 20 C -0.12 -1.20 5.98 -26.68 -0.16 -1.36 16 21 C -0.12 -1.24 5.97 -26.70 -0.16 -1.40 16 22 C -0.06 -0.80 5.92 -28.01 -0.17 -0.96 16 23 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16 24 H 0.08 1.76 4.78 -51.93 -0.25 1.51 16 25 H 0.02 0.39 7.23 -51.93 -0.38 0.02 16 26 H 0.33 5.01 9.08 -39.29 -0.36 4.65 16 27 H 0.33 5.62 8.11 -39.29 -0.32 5.30 16 28 H 0.15 3.19 7.56 -52.49 -0.40 2.79 16 29 H 0.13 2.16 8.00 -52.49 -0.42 1.74 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -29.89 292.98 -8.27 -38.16 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.48 Total: 10.09 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -3.31 Total: -21.66 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.56 Total: -51.40 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -4.47 Total: 20.39 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.89 -8.27 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.300 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds