Wall clock time and date at job start Mon Mar 30 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99947 * 2 1 4 4 H 1.48498 * 109.47188 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47088 * 239.99958 * 3 2 1 6 6 H 1.48496 * 109.46880 * 120.00364 * 3 2 1 7 7 C 1.37873 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99850 * 16.62614 * 7 2 1 9 9 C 1.50700 * 120.00455 * 196.62080 * 7 2 1 10 10 H 1.08999 * 109.47024 * 305.66005 * 9 7 2 11 11 C 1.53004 * 109.46406 * 65.65624 * 9 7 2 12 12 N 1.46903 * 109.46586 * 185.86323 * 11 9 7 13 13 C 1.50692 * 109.47592 * 185.65650 * 9 7 2 14 14 C 1.38246 * 120.57812 * 299.72522 * 13 9 7 15 15 N 1.31508 * 120.61117 * 179.85862 * 14 13 9 16 16 C 1.32704 * 122.40004 * 0.59637 * 15 14 13 17 17 C 1.37597 * 120.09797 * 359.50125 * 16 15 14 18 18 C 1.38403 * 120.58085 * 120.00266 * 13 9 7 19 19 C 1.50497 * 122.84935 * 180.44867 * 17 16 15 20 20 C 1.52764 * 110.55520 * 342.48303 * 19 17 16 21 21 C 1.53325 * 108.36205 * 50.83804 * 20 19 17 22 22 C 1.50722 * 117.56570 * 179.33278 * 16 15 14 23 23 H 0.97001 * 120.00417 * 174.16826 * 1 2 3 24 24 H 1.08997 * 109.47714 * 305.86112 * 11 9 7 25 25 H 1.09001 * 109.47060 * 65.86768 * 11 9 7 26 26 H 1.00903 * 110.99689 * 180.02562 * 12 11 9 27 27 H 1.00897 * 111.00566 * 303.95337 * 12 11 9 28 28 H 1.08002 * 119.69487 * 0.12111 * 14 13 9 29 29 H 1.07995 * 120.56984 * 359.85651 * 18 13 9 30 30 H 1.08993 * 109.25846 * 102.75989 * 19 17 16 31 31 H 1.09001 * 109.26094 * 222.20441 * 19 17 16 32 32 H 1.09011 * 109.68615 * 170.55596 * 20 19 17 33 33 H 1.08998 * 109.69123 * 291.11331 * 20 19 17 34 34 H 1.09000 * 109.63864 * 49.81988 * 21 20 19 35 35 H 1.08991 * 109.64106 * 170.45877 * 21 20 19 36 36 H 1.09007 * 109.26028 * 42.01182 * 22 16 15 37 37 H 1.09003 * 109.22535 * 282.55677 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 1.4983 -2.1099 -0.2667 9 6 3.4643 -1.2212 0.3738 10 1 4.0122 -0.5158 -0.2509 11 6 3.6218 -0.8294 1.8444 12 7 5.0497 -0.7192 2.1714 13 6 4.0111 -2.6094 0.1625 14 6 3.4827 -3.6857 0.8507 15 7 3.9576 -4.8979 0.6647 16 6 4.9590 -5.1491 -0.1691 17 6 5.5339 -4.1246 -0.8855 18 6 5.0549 -2.8283 -0.7196 19 6 6.6650 -4.3406 -1.8545 20 6 7.3357 -5.6901 -1.6039 21 6 6.2477 -6.7695 -1.5604 22 6 5.4271 -6.5769 -0.2868 23 1 -0.4851 -0.8357 -0.0854 24 1 3.1340 0.1296 2.0193 25 1 3.1625 -1.5910 2.4746 26 1 5.1804 -0.4616 3.1382 27 1 5.5371 -1.5762 1.9569 28 1 2.6696 -3.5303 1.5443 29 1 5.4900 -2.0074 -1.2702 30 1 6.2761 -4.3159 -2.8723 31 1 7.4003 -3.5453 -1.7318 32 1 8.0364 -5.9072 -2.4102 33 1 7.8666 -5.6653 -0.6523 34 1 5.6000 -6.6722 -2.4317 35 1 6.7106 -7.7562 -1.5524 36 1 4.5610 -7.2382 -0.3139 37 1 6.0421 -6.8255 0.5781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260497014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:19 Heat of formation + Delta-G solvation = -15.387093 kcal Electronic energy + Delta-G solvation = -17891.488015 eV Core-core repulsion = 15245.140912 eV Total energy + Delta-G solvation = -2646.347103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63555 -38.28050 -36.64966 -34.52461 -34.07153 -32.07592 -30.76796 -29.34023 -25.34709 -25.02675 -24.36993 -23.46030 -21.89642 -20.21587 -19.63509 -17.59138 -17.28791 -16.83250 -16.31219 -15.78084 -15.44973 -15.25815 -14.99268 -14.76071 -14.42173 -14.30555 -13.87452 -13.70657 -13.53118 -13.19873 -12.91055 -12.56787 -12.45009 -12.08765 -11.77003 -11.69758 -11.61746 -11.34187 -11.11423 -10.48592 -10.36078 -10.24186 -9.59763 -9.48536 -8.74673 -6.42289 0.24280 0.39340 1.49159 1.53495 1.74135 2.45808 2.83205 3.02117 3.34068 3.73248 3.82919 3.88830 4.01445 4.05620 4.15182 4.22768 4.29628 4.47865 4.57734 4.62020 4.66565 4.77603 4.87950 4.93700 5.02819 5.06978 5.12841 5.15039 5.26547 5.30116 5.46900 5.48983 5.63002 5.81416 5.93328 6.00204 6.27029 6.51356 6.65287 7.09148 7.35940 8.60026 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032421 B = 0.006277 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.428187 B = 4459.706802 C = 4569.346759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 1.085 2.915 4 H -0.291 1.291 5 H -0.266 1.266 6 H -0.241 1.241 7 C -0.594 4.594 8 H 0.016 0.984 9 C 0.064 3.936 10 H 0.039 0.961 11 C 0.067 3.933 12 N -0.845 5.845 13 C -0.097 4.097 14 C 0.085 3.915 15 N -0.510 5.510 16 C 0.093 3.907 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.062 4.062 23 H 0.252 0.748 24 H 0.064 0.936 25 H 0.010 0.990 26 H 0.345 0.655 27 H 0.336 0.664 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.635 -9.461 -1.668 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.213 4.213 3 Si 0.906 3.094 4 H -0.218 1.218 5 H -0.191 1.191 6 H -0.165 1.165 7 C -0.632 4.632 8 H 0.034 0.966 9 C 0.044 3.956 10 H 0.057 0.943 11 C -0.063 4.063 12 N -0.375 5.375 13 C -0.099 4.099 14 C -0.074 4.074 15 N -0.219 5.219 16 C -0.043 4.043 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.099 4.099 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.064 -7.962 -1.665 18.903 hybrid contribution -1.006 -1.673 0.299 1.975 sum 16.058 -9.635 -1.366 18.776 Atomic orbital electron populations 1.70988 1.08150 1.30044 1.47786 1.27184 0.96012 1.06086 0.92025 0.83556 0.74644 0.71503 0.79663 1.21773 1.19127 1.16541 1.22045 0.95590 0.94497 1.51045 0.96596 1.17971 0.94350 0.89806 0.93436 0.94340 1.22179 0.88027 0.99506 0.96619 1.58815 1.11093 1.39889 1.27695 1.21008 0.95102 0.97543 0.96260 1.22230 0.98320 0.87816 0.99013 1.67487 1.12214 1.23522 1.18671 1.21554 0.92209 0.97511 0.93037 1.20782 0.99664 0.92448 0.99421 1.21767 0.95503 0.97596 0.97120 1.20507 0.94045 0.99925 0.96753 1.21573 0.97554 0.92790 1.03234 1.21582 0.97199 1.00497 0.95905 1.20381 1.00299 0.88900 1.00358 0.93927 0.91746 0.97215 0.84267 0.85192 0.85389 0.84070 0.89986 0.89323 0.88756 0.91361 0.92116 0.88524 0.90860 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.69 21.45 0.29 -58.22 16 2 C -0.01 -0.83 5.31 84.65 0.45 -0.38 16 3 Si 1.08 50.07 26.28 68.60 1.80 51.88 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.24 -10.05 5.69 99.48 0.57 -9.48 16 7 C -0.59 -33.61 8.56 25.60 0.22 -33.39 16 8 H 0.02 1.00 7.80 -2.91 -0.02 0.98 16 9 C 0.06 2.99 1.75 -12.29 -0.02 2.97 16 10 H 0.04 1.79 6.60 -2.39 -0.02 1.77 16 11 C 0.07 2.84 5.82 86.30 0.50 3.35 16 12 N -0.85 -28.64 9.62 -186.71 -1.80 -30.44 16 13 C -0.10 -4.08 3.81 -19.83 -0.08 -4.16 16 14 C 0.08 3.65 9.82 84.74 0.83 4.48 16 15 N -0.51 -20.15 10.19 -184.00 -1.87 -22.03 16 16 C 0.09 3.02 6.62 42.28 0.28 3.30 16 17 C -0.12 -3.69 5.74 -19.85 -0.11 -3.80 16 18 C -0.09 -3.33 9.39 22.54 0.21 -3.12 16 19 C -0.07 -1.54 5.68 29.71 0.17 -1.37 16 20 C -0.11 -1.77 5.98 30.62 0.18 -1.59 16 21 C -0.11 -1.93 5.97 30.61 0.18 -1.74 16 22 C -0.06 -1.46 5.92 29.76 0.18 -1.28 16 23 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 24 H 0.06 2.88 4.78 -2.39 -0.01 2.87 16 25 H 0.01 0.42 7.23 -2.39 -0.02 0.40 16 26 H 0.34 9.79 9.08 -89.69 -0.81 8.97 16 27 H 0.34 10.88 8.11 -89.70 -0.73 10.16 16 28 H 0.13 5.89 7.56 -2.91 -0.02 5.87 16 29 H 0.14 4.51 8.00 -2.91 -0.02 4.49 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.69 292.98 0.78 -66.91 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.64 Total: 28.64 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 2.99 Total: -36.75 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.38 Total: -110.68 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.80 Total: 51.88 kcal Total: -67.69 0.78 -66.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260497014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.520 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds