Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38310 * 120.04085 * 2 1 4 4 C 1.38129 * 120.15508 * 180.33454 * 3 2 1 5 5 C 1.38507 * 120.30674 * 359.42143 * 4 3 2 6 6 C 1.38603 * 119.56539 * 0.44081 * 5 4 3 7 7 C 1.38016 * 120.04448 * 179.97438 * 2 1 3 8 8 N 1.39914 * 120.84724 * 179.97438 * 6 5 4 9 9 C 1.46923 * 118.91748 * 346.63406 * 8 6 5 10 10 C 1.53434 * 107.79425 * 44.63230 * 9 8 6 11 11 C 1.50593 * 118.92780 * 180.16936 * 5 4 3 12 12 C 1.50702 * 109.30315 * 279.87044 * 11 5 4 13 13 H 1.07996 * 119.99407 * 1.07759 * 12 11 5 14 14 C 1.37873 * 120.00237 * 181.07525 * 12 11 5 15 15 N 1.31515 * 120.00000 * 352.93859 * 14 12 11 16 16 Si 1.86803 * 120.00150 * 172.93844 * 14 12 11 17 17 H 1.48502 * 109.46923 * 60.00092 * 16 14 12 18 18 H 1.48500 * 109.47217 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46823 * 300.00168 * 16 14 12 20 20 C 1.53001 * 109.30245 * 39.45252 * 11 5 4 21 21 N 1.46904 * 109.47077 * 54.56935 * 20 11 5 22 22 H 1.09001 * 109.47283 * 270.02232 * 1 2 3 23 23 H 1.09005 * 109.46882 * 30.01941 * 1 2 3 24 24 H 1.08999 * 109.47212 * 150.02088 * 1 2 3 25 25 H 1.07999 * 119.92524 * 0.03334 * 3 2 1 26 26 H 1.08000 * 119.84717 * 179.73571 * 4 3 2 27 27 H 1.08006 * 119.98740 * 359.97438 * 7 2 1 28 28 H 0.96995 * 120.54360 * 166.61570 * 8 6 5 29 29 H 1.09001 * 109.80168 * 285.05728 * 9 8 6 30 30 H 1.09005 * 109.84275 * 164.22986 * 9 8 6 31 31 H 1.08998 * 109.57777 * 176.97049 * 10 9 8 32 32 H 1.09001 * 109.67593 * 56.64707 * 10 9 8 33 33 H 0.96998 * 120.00417 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47555 * 174.57464 * 20 11 5 35 35 H 1.09000 * 109.47119 * 294.57803 * 20 11 5 36 36 H 1.00903 * 110.99446 * 61.69374 * 21 20 11 37 37 H 1.00900 * 111.00019 * 185.63969 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1973 0.0000 4 6 3.5807 1.2001 -0.0070 5 6 4.2821 0.0057 -0.0019 6 6 3.5888 -1.1945 0.0009 7 6 2.1980 -1.1947 0.0005 8 7 4.2702 -2.4165 0.0055 9 6 5.7093 -2.4286 -0.2901 10 6 6.3588 -1.2813 0.4947 11 6 5.7875 0.0450 -0.0059 12 6 6.2756 0.2938 -1.4098 13 1 5.5657 0.4284 -2.2123 14 6 7.6285 0.3494 -1.6696 15 7 8.4904 0.3248 -0.6765 16 14 8.2375 0.4598 -3.4321 17 1 7.6996 1.6907 -4.0654 18 1 9.7217 0.5072 -3.4410 19 1 7.7751 -0.7300 -4.1909 20 6 6.2663 1.1780 0.9041 21 7 5.6779 1.0147 2.2402 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6589 2.1323 0.0005 26 1 4.1163 2.1379 -0.0113 27 1 1.6585 -2.1304 0.0014 28 1 3.8001 -3.2422 0.2008 29 1 5.8682 -2.2815 -1.3583 30 1 6.1427 -3.3796 0.0199 31 1 7.4374 -1.2966 0.3385 32 1 6.1420 -1.3943 1.5569 33 1 9.4422 0.3636 -0.8592 34 1 7.3532 1.1488 0.9796 35 1 5.9568 2.1356 0.4855 36 1 5.9723 0.1462 2.6612 37 1 5.9043 1.7990 2.8333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260502335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = 23.343489 kcal Electronic energy + Delta-G solvation = -18642.818713 eV Core-core repulsion = 15998.151094 eV Total energy + Delta-G solvation = -2644.667619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35727 -36.30421 -34.56207 -32.30344 -31.39429 -30.25176 -28.62838 -26.54640 -25.29368 -23.78440 -22.45331 -21.06234 -20.17232 -18.23162 -16.42370 -16.07981 -15.31410 -14.85622 -14.55011 -14.13885 -13.47723 -13.31055 -13.25285 -12.95526 -12.72574 -12.04430 -12.00758 -11.80226 -11.48953 -11.36506 -11.07275 -10.97984 -10.79462 -10.63896 -10.42118 -10.15238 -9.40704 -9.21029 -9.02352 -8.85336 -8.37119 -7.53903 -7.47504 -6.40277 -5.99847 -4.12746 2.44409 2.59681 3.27679 3.32395 3.37103 4.36738 4.39243 4.88427 5.17867 5.57975 5.62741 5.76770 5.89550 5.95813 6.00376 6.14055 6.22599 6.28909 6.33262 6.52159 6.56129 6.71903 6.77226 7.03251 7.11007 7.14385 7.30626 7.38201 7.47452 7.55887 7.65726 7.83567 7.91801 8.06725 8.17506 8.32625 8.42342 8.51084 8.69476 8.89988 9.51625 10.94864 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.008482 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.245746 B = 3300.493539 C = 3360.693334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 C -0.183 4.183 4 C -0.058 4.058 5 C -0.072 4.072 6 C 0.208 3.792 7 C -0.205 4.205 8 N -0.757 5.757 9 C 0.132 3.868 10 C -0.122 4.122 11 C 0.119 3.881 12 C -0.496 4.496 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.071 3.929 21 N -0.855 5.855 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.326 0.674 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -2.422 2.952 7.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.077 4.077 5 C -0.077 4.077 6 C 0.106 3.894 7 C -0.228 4.228 8 N -0.388 5.388 9 C 0.008 3.992 10 C -0.160 4.160 11 C 0.118 3.882 12 C -0.534 4.534 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.528 5.528 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.059 4.059 21 N -0.382 5.382 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.186 -2.375 2.527 7.980 hybrid contribution 1.211 -0.262 -0.563 1.361 sum -5.976 -2.637 1.964 6.821 Atomic orbital electron populations 1.20652 0.92749 1.01479 1.01117 1.19288 0.94442 0.93007 1.01113 1.20568 0.94411 0.96190 1.09098 1.20738 0.92747 0.97650 0.96597 1.19626 0.97036 0.90269 1.00723 1.17608 0.90158 0.86488 0.95146 1.20266 0.92231 0.96928 1.13374 1.44665 1.09055 1.05162 1.79948 1.21524 0.79457 0.97922 1.00299 1.21889 1.03026 0.95530 0.95595 1.16964 0.85644 0.91388 0.94212 1.21092 0.91279 1.48322 0.92750 0.92577 1.24909 0.96783 0.94912 0.96856 1.69804 1.01974 1.50786 1.30209 0.86696 0.77419 0.78794 0.85399 1.20272 1.21364 1.20299 1.22043 0.98918 0.98393 0.86503 1.59030 1.67721 1.05687 1.05783 0.92280 0.92419 0.92639 0.88109 0.87084 0.88019 0.78211 0.91955 0.93147 0.88477 0.95277 0.92932 0.91773 0.93525 0.86250 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.01 36.01 0.36 -1.07 16 2 C -0.08 -1.41 5.88 -104.67 -0.62 -2.02 16 3 C -0.18 -3.50 9.70 -39.59 -0.38 -3.89 16 4 C -0.06 -1.25 8.86 -39.52 -0.35 -1.60 16 5 C -0.07 -1.63 4.15 -104.44 -0.43 -2.06 16 6 C 0.21 4.34 6.47 -83.72 -0.54 3.80 16 7 C -0.21 -3.87 9.53 -39.35 -0.38 -4.24 16 8 N -0.76 -14.31 5.80 -58.08 -0.34 -14.65 16 9 C 0.13 2.65 7.01 -3.59 -0.03 2.62 16 10 C -0.12 -2.70 4.62 -26.59 -0.12 -2.82 16 11 C 0.12 2.77 0.23 -156.94 -0.04 2.73 16 12 C -0.50 -12.81 7.01 -34.44 -0.24 -13.05 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.69 5.05 -17.82 -0.09 1.60 16 15 N -0.89 -22.95 9.41 55.43 0.52 -22.43 16 16 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.07 1.61 4.81 -3.82 -0.02 1.59 16 21 N -0.85 -16.70 8.77 -10.37 -0.09 -16.79 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 24 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.11 2.40 6.47 -52.49 -0.34 2.07 16 27 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.39 6.10 8.86 -40.82 -0.36 5.74 16 29 H 0.06 1.39 7.38 -51.93 -0.38 1.00 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.36 5.96 -51.93 -0.31 2.05 16 32 H 0.03 0.62 6.51 -51.93 -0.34 0.28 16 33 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.06 1.59 6.11 -51.93 -0.32 1.28 16 35 H 0.05 1.10 6.73 -51.93 -0.35 0.75 16 36 H 0.33 6.26 7.34 -39.29 -0.29 5.98 16 37 H 0.32 5.46 9.08 -39.29 -0.36 5.11 16 LS Contribution 287.25 15.07 4.33 4.33 Total: -1.00 -26.66 287.25 -8.59 -35.25 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -5.12 Total: 17.26 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.87 Total: -18.41 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.09 Total: -53.87 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.66 -8.59 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.590 kcal (2) G-P(sol) polarization free energy of solvation -26.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds