Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38310 * 120.04085 * 2 1 4 4 C 1.38129 * 120.15508 * 180.33454 * 3 2 1 5 5 C 1.38507 * 120.30674 * 359.42143 * 4 3 2 6 6 C 1.38603 * 119.56539 * 0.44081 * 5 4 3 7 7 C 1.38016 * 120.04448 * 179.97438 * 2 1 3 8 8 N 1.39914 * 120.84724 * 179.97438 * 6 5 4 9 9 C 1.46923 * 118.91748 * 346.63406 * 8 6 5 10 10 C 1.53434 * 107.79425 * 44.63230 * 9 8 6 11 11 C 1.50593 * 118.92780 * 180.16936 * 5 4 3 12 12 C 1.50702 * 109.30315 * 279.87044 * 11 5 4 13 13 H 1.07996 * 119.99407 * 1.07759 * 12 11 5 14 14 C 1.37873 * 120.00237 * 181.07525 * 12 11 5 15 15 N 1.31515 * 120.00000 * 352.93859 * 14 12 11 16 16 Si 1.86803 * 120.00150 * 172.93844 * 14 12 11 17 17 H 1.48502 * 109.46923 * 60.00092 * 16 14 12 18 18 H 1.48500 * 109.47217 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46823 * 300.00168 * 16 14 12 20 20 C 1.53001 * 109.30245 * 39.45252 * 11 5 4 21 21 N 1.46904 * 109.47077 * 54.56935 * 20 11 5 22 22 H 1.09001 * 109.47283 * 270.02232 * 1 2 3 23 23 H 1.09005 * 109.46882 * 30.01941 * 1 2 3 24 24 H 1.08999 * 109.47212 * 150.02088 * 1 2 3 25 25 H 1.07999 * 119.92524 * 0.03334 * 3 2 1 26 26 H 1.08000 * 119.84717 * 179.73571 * 4 3 2 27 27 H 1.08006 * 119.98740 * 359.97438 * 7 2 1 28 28 H 0.96995 * 120.54360 * 166.61570 * 8 6 5 29 29 H 1.09001 * 109.80168 * 285.05728 * 9 8 6 30 30 H 1.09005 * 109.84275 * 164.22986 * 9 8 6 31 31 H 1.08998 * 109.57777 * 176.97049 * 10 9 8 32 32 H 1.09001 * 109.67593 * 56.64707 * 10 9 8 33 33 H 0.96998 * 120.00417 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47555 * 174.57464 * 20 11 5 35 35 H 1.09000 * 109.47119 * 294.57803 * 20 11 5 36 36 H 1.00903 * 110.99446 * 61.69374 * 21 20 11 37 37 H 1.00900 * 111.00019 * 185.63969 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1973 0.0000 4 6 3.5807 1.2001 -0.0070 5 6 4.2821 0.0057 -0.0019 6 6 3.5888 -1.1945 0.0009 7 6 2.1980 -1.1947 0.0005 8 7 4.2702 -2.4165 0.0055 9 6 5.7093 -2.4286 -0.2901 10 6 6.3588 -1.2813 0.4947 11 6 5.7875 0.0450 -0.0059 12 6 6.2756 0.2938 -1.4098 13 1 5.5657 0.4284 -2.2123 14 6 7.6285 0.3494 -1.6696 15 7 8.4904 0.3248 -0.6765 16 14 8.2375 0.4598 -3.4321 17 1 7.6996 1.6907 -4.0654 18 1 9.7217 0.5072 -3.4410 19 1 7.7751 -0.7300 -4.1909 20 6 6.2663 1.1780 0.9041 21 7 5.6779 1.0147 2.2402 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6589 2.1323 0.0005 26 1 4.1163 2.1379 -0.0113 27 1 1.6585 -2.1304 0.0014 28 1 3.8001 -3.2422 0.2008 29 1 5.8682 -2.2815 -1.3583 30 1 6.1427 -3.3796 0.0199 31 1 7.4374 -1.2966 0.3385 32 1 6.1420 -1.3943 1.5569 33 1 9.4422 0.3636 -0.8592 34 1 7.3532 1.1488 0.9796 35 1 5.9568 2.1356 0.4855 36 1 5.9723 0.1462 2.6612 37 1 5.9043 1.7990 2.8333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = 6.651762 kcal Electronic energy + Delta-G solvation = -18643.542520 eV Core-core repulsion = 15998.151094 eV Total energy + Delta-G solvation = -2645.391426 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95101 -37.90288 -36.18418 -34.17804 -32.87471 -31.89094 -30.23258 -28.06856 -26.96589 -25.57813 -24.05101 -22.61584 -21.82929 -19.95328 -18.09470 -17.76600 -17.00808 -16.66352 -16.13703 -15.86681 -15.01774 -14.96921 -14.67314 -14.34409 -14.19560 -13.87230 -13.55200 -13.42034 -13.04926 -12.87078 -12.75266 -12.72177 -12.46987 -12.36958 -12.04731 -11.90760 -11.13156 -10.93362 -10.80378 -10.52476 -10.25333 -9.22329 -9.04010 -8.08655 -7.81433 -6.14321 0.92022 1.05428 1.40790 1.43210 1.49665 2.45068 2.90318 3.18681 3.33519 4.11028 4.23980 4.28834 4.46554 4.52787 4.62032 4.68435 4.76149 4.88254 4.93484 4.97849 5.01379 5.18313 5.23664 5.31658 5.43005 5.51710 5.56709 5.64788 5.76077 5.87864 6.02227 6.08685 6.26405 6.36132 6.43362 6.62530 6.76398 6.82661 6.97557 7.29546 7.51498 8.95721 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.008482 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.245746 B = 3300.493539 C = 3360.693334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.074 4.074 3 C -0.190 4.190 4 C -0.076 4.076 5 C -0.103 4.103 6 C 0.189 3.811 7 C -0.206 4.206 8 N -0.749 5.749 9 C 0.138 3.862 10 C -0.115 4.115 11 C 0.117 3.883 12 C -0.509 4.509 13 H 0.032 0.968 14 C 0.034 3.966 15 N -0.899 5.899 16 Si 0.935 3.065 17 H -0.281 1.281 18 H -0.282 1.282 19 H -0.277 1.277 20 C 0.086 3.914 21 N -0.845 5.845 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.403 0.597 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.330 0.670 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 -3.410 3.256 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.210 4.210 4 C -0.095 4.095 5 C -0.107 4.107 6 C 0.088 3.912 7 C -0.229 4.229 8 N -0.381 5.381 9 C 0.013 3.987 10 C -0.154 4.154 11 C 0.116 3.884 12 C -0.547 4.547 13 H 0.051 0.949 14 C -0.166 4.166 15 N -0.539 5.539 16 Si 0.763 3.237 17 H -0.207 1.207 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.044 4.044 21 N -0.374 5.374 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.238 0.762 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.130 -3.374 2.848 10.141 hybrid contribution 1.738 0.085 -0.639 1.854 sum -7.391 -3.290 2.208 8.386 Atomic orbital electron populations 1.20709 0.89357 1.02992 1.02627 1.19799 0.96898 0.92109 0.98694 1.20839 0.93550 0.97919 1.08686 1.20759 0.94038 0.96860 0.97827 1.19610 0.96423 0.91498 1.03150 1.17847 0.91299 0.86522 0.95574 1.20615 0.91450 0.98542 1.12288 1.44512 1.08456 1.05458 1.79722 1.21357 0.80420 0.98538 0.98380 1.21741 1.01570 0.96024 0.96065 1.16902 0.86870 0.91824 0.92831 1.21188 0.91166 1.48682 0.93685 0.94919 1.25383 0.96879 0.94870 0.99419 1.69909 1.01881 1.50957 1.31106 0.85971 0.77121 0.78353 0.82303 1.20676 1.20747 1.20267 1.21710 0.97189 0.97507 0.88010 1.58907 1.67131 1.06548 1.04812 0.90601 0.91134 0.91019 0.86047 0.88684 0.85287 0.76184 0.94619 0.89996 0.90881 0.94821 0.93051 0.94273 0.95412 0.85769 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 10.01 71.24 0.71 -1.64 16 2 C -0.07 -2.46 5.88 -19.90 -0.12 -2.58 16 3 C -0.19 -7.00 9.70 22.26 0.22 -6.78 16 4 C -0.08 -3.28 8.86 22.31 0.20 -3.08 16 5 C -0.10 -4.62 4.15 -19.75 -0.08 -4.71 16 6 C 0.19 7.67 6.47 38.14 0.25 7.92 16 7 C -0.21 -7.21 9.53 22.42 0.21 -6.99 16 8 N -0.75 -27.05 5.80 -337.68 -1.96 -29.01 16 9 C 0.14 5.43 7.01 86.44 0.61 6.04 16 10 C -0.12 -5.15 4.62 30.69 0.14 -5.01 16 11 C 0.12 5.55 0.23 -53.76 -0.01 5.54 16 12 C -0.51 -27.12 7.01 25.60 0.18 -26.94 16 13 H 0.03 1.85 7.74 -2.91 -0.02 1.82 16 14 C 0.03 1.78 5.05 84.65 0.43 2.21 16 15 N -0.90 -47.51 9.41 21.45 0.20 -47.30 16 16 Si 0.94 42.66 29.54 68.60 2.03 44.69 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 C 0.09 4.03 4.81 86.30 0.41 4.45 16 21 N -0.85 -33.14 8.77 -186.71 -1.64 -34.78 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 24 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 26 H 0.10 4.28 6.47 -2.91 -0.02 4.26 16 27 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.40 11.67 8.86 -92.71 -0.82 10.84 16 29 H 0.04 1.60 7.38 -2.39 -0.02 1.58 16 30 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.07 3.62 5.96 -2.39 -0.01 3.60 16 32 H 0.03 1.43 6.51 -2.39 -0.02 1.42 16 33 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.04 2.02 6.11 -2.39 -0.01 2.00 16 35 H 0.03 1.36 6.73 -2.39 -0.02 1.35 16 36 H 0.33 12.60 7.34 -89.69 -0.66 11.94 16 37 H 0.33 11.36 9.08 -89.69 -0.81 10.54 16 Total: -1.00 -57.83 287.25 0.59 -57.24 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -1.19 Total: 40.74 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.15 Total: -31.58 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.39 Total: -111.09 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -57.83 0.59 -57.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.895 kcal (2) G-P(sol) polarization free energy of solvation -57.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds