Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38314 * 120.04112 * 2 1 4 4 C 1.38128 * 120.15383 * 179.97438 * 3 2 1 5 5 C 1.38500 * 120.31259 * 0.02562 * 4 3 2 6 6 C 1.38605 * 119.56242 * 0.14543 * 5 4 3 7 7 C 1.38027 * 120.04833 * 180.02562 * 2 1 3 8 8 N 1.39915 * 120.83868 * 179.54895 * 6 5 4 9 9 C 1.46923 * 118.92393 * 13.51428 * 8 6 5 10 10 C 1.53444 * 107.78996 * 315.32740 * 9 8 6 11 11 C 1.50593 * 118.93100 * 180.16433 * 5 4 3 12 12 C 1.50697 * 109.30018 * 80.32420 * 11 5 4 13 13 H 1.08001 * 120.00174 * 4.90069 * 12 11 5 14 14 C 1.37881 * 120.00002 * 184.90437 * 12 11 5 15 15 N 1.31511 * 119.99987 * 354.82222 * 14 12 11 16 16 Si 1.86803 * 119.99918 * 174.82132 * 14 12 11 17 17 H 1.48500 * 109.46720 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47147 * 299.99698 * 16 14 12 19 19 H 1.48497 * 109.47362 * 60.00135 * 16 14 12 20 20 C 1.52992 * 109.30383 * 320.73440 * 11 5 4 21 21 N 1.46893 * 109.47706 * 305.17401 * 20 11 5 22 22 H 1.08999 * 109.47078 * 89.99918 * 1 2 3 23 23 H 1.09004 * 109.46842 * 210.00237 * 1 2 3 24 24 H 1.09000 * 109.46758 * 330.00039 * 1 2 3 25 25 H 1.07990 * 119.92292 * 359.95109 * 3 2 1 26 26 H 1.08005 * 119.84187 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.97853 * 359.97438 * 7 2 1 28 28 H 0.97000 * 120.54151 * 193.49138 * 8 6 5 29 29 H 1.08997 * 109.79457 * 74.90877 * 9 8 6 30 30 H 1.08994 * 109.79891 * 195.70724 * 9 8 6 31 31 H 1.09002 * 109.57332 * 303.39135 * 10 9 8 32 32 H 1.08994 * 109.57648 * 183.00786 * 10 9 8 33 33 H 0.97000 * 120.00473 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.47332 * 65.17614 * 20 11 5 35 35 H 1.09002 * 109.47549 * 185.16909 * 20 11 5 36 36 H 1.00900 * 111.00664 * 174.77384 * 21 20 11 37 37 H 1.00904 * 111.00250 * 298.73485 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5807 1.2001 0.0005 5 6 4.2821 0.0058 0.0005 6 6 3.5889 -1.1944 -0.0031 7 6 2.1982 -1.1948 -0.0005 8 7 4.2703 -2.4163 -0.0126 9 6 5.7097 -2.4295 0.2817 10 6 6.3587 -1.2798 -0.5002 11 6 5.7875 0.0450 0.0049 12 6 6.2752 0.2946 1.4088 13 1 5.5706 0.3336 2.2263 14 6 7.6210 0.4733 1.6495 15 7 8.4891 0.3253 0.6728 16 14 8.2113 0.9258 3.3631 17 1 9.6903 1.0587 3.3581 18 1 7.5993 2.2151 3.7731 19 1 7.8137 -0.1375 4.3205 20 6 6.2666 1.1773 -0.9057 21 7 5.6836 1.0098 -2.2436 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6589 2.1322 -0.0008 26 1 4.1163 2.1379 0.0010 27 1 1.6586 -2.1303 -0.0005 28 1 3.8001 -3.2415 -0.2100 29 1 5.8693 -2.2857 1.3503 30 1 6.1419 -3.3799 -0.0313 31 1 6.1394 -1.3909 -1.5621 32 1 7.4374 -1.2954 -0.3446 33 1 9.4359 0.4506 0.8422 34 1 5.9532 2.1350 -0.4902 35 1 7.3539 1.1507 -0.9773 36 1 5.9158 1.7901 -2.8396 37 1 5.9761 0.1379 -2.6589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260502340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = 23.350146 kcal Electronic energy + Delta-G solvation = -18636.697328 eV Core-core repulsion = 15992.029998 eV Total energy + Delta-G solvation = -2644.667330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35522 -36.30039 -34.57548 -32.28178 -31.39811 -30.26216 -28.62704 -26.54318 -25.29912 -23.77342 -22.45068 -21.05473 -20.18240 -18.24311 -16.42202 -16.08168 -15.31103 -14.85082 -14.55293 -14.11982 -13.47103 -13.31594 -13.26787 -12.95321 -12.72063 -12.06810 -11.99711 -11.81350 -11.47814 -11.37259 -11.06438 -10.95271 -10.80273 -10.64027 -10.41162 -10.12477 -9.35811 -9.20541 -9.11198 -8.83759 -8.38453 -7.53320 -7.47448 -6.40257 -5.99767 -4.12539 2.44432 2.59693 3.28033 3.32645 3.37496 4.37106 4.39693 4.88548 5.18093 5.57960 5.62782 5.75203 5.89807 5.96514 6.00428 6.14465 6.22608 6.29529 6.34459 6.52431 6.56946 6.71365 6.77631 7.02861 7.10908 7.14956 7.30621 7.38359 7.47440 7.57756 7.64472 7.82998 7.91845 8.07836 8.17391 8.32374 8.41165 8.50905 8.69628 8.89966 9.51780 10.95211 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.008486 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.606777 B = 3298.697512 C = 3369.517191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 C -0.183 4.183 4 C -0.058 4.058 5 C -0.073 4.073 6 C 0.208 3.792 7 C -0.205 4.205 8 N -0.758 5.758 9 C 0.132 3.868 10 C -0.122 4.122 11 C 0.119 3.881 12 C -0.495 4.495 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.071 3.929 21 N -0.854 5.854 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.100 0.900 33 H 0.261 0.739 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.317 0.683 37 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -2.254 -2.983 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.077 4.077 5 C -0.077 4.077 6 C 0.106 3.894 7 C -0.228 4.228 8 N -0.389 5.389 9 C 0.008 3.992 10 C -0.161 4.161 11 C 0.118 3.882 12 C -0.534 4.534 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.059 4.059 21 N -0.382 5.382 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.182 -2.199 -2.565 7.937 hybrid contribution 1.195 -0.071 0.540 1.313 sum -5.987 -2.270 -2.025 6.716 Atomic orbital electron populations 1.20653 0.92750 1.01481 1.01117 1.19293 0.94442 0.93009 1.01093 1.20569 0.94415 0.96192 1.09128 1.20736 0.92740 0.97652 0.96557 1.19630 0.97051 0.90273 1.00766 1.17611 0.90162 0.86499 0.95130 1.20266 0.92237 0.96925 1.13395 1.44680 1.09062 1.05212 1.79907 1.21519 0.79380 0.97965 1.00299 1.21942 1.03194 0.95484 0.95452 1.16959 0.85629 0.91411 0.94189 1.21079 0.91909 1.48119 0.92268 0.92597 1.24917 0.96682 0.95082 0.96813 1.69778 1.01986 1.49755 1.31352 0.86684 0.77366 0.79278 0.84895 1.21373 1.20242 1.20344 1.21980 0.98942 0.98367 0.86620 1.59005 1.67773 1.05729 1.05653 0.92277 0.92640 0.92418 0.88109 0.87087 0.88021 0.78224 0.91990 0.93152 0.95406 0.88188 0.92927 0.93522 0.91913 0.87321 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.01 36.01 0.36 -1.07 16 2 C -0.08 -1.40 5.88 -104.67 -0.62 -2.02 16 3 C -0.18 -3.51 9.70 -39.59 -0.38 -3.90 16 4 C -0.06 -1.24 8.86 -39.53 -0.35 -1.60 16 5 C -0.07 -1.64 4.16 -104.44 -0.43 -2.08 16 6 C 0.21 4.34 6.47 -83.72 -0.54 3.80 16 7 C -0.21 -3.88 9.53 -39.35 -0.38 -4.25 16 8 N -0.76 -14.32 5.80 -58.09 -0.34 -14.66 16 9 C 0.13 2.66 7.01 -3.58 -0.03 2.63 16 10 C -0.12 -2.71 4.64 -26.57 -0.12 -2.83 16 11 C 0.12 2.77 0.23 -156.94 -0.04 2.74 16 12 C -0.50 -12.80 7.04 -34.44 -0.24 -13.04 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.69 5.10 -17.82 -0.09 1.60 16 15 N -0.89 -22.96 9.36 55.43 0.52 -22.44 16 16 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C 0.07 1.60 4.75 -3.83 -0.02 1.58 16 21 N -0.85 -16.67 8.78 -10.38 -0.09 -16.76 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 24 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 25 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.11 2.40 6.46 -52.48 -0.34 2.06 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.39 6.11 8.86 -40.82 -0.36 5.75 16 29 H 0.06 1.38 7.39 -51.93 -0.38 1.00 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.59 6.47 -51.93 -0.34 0.26 16 32 H 0.10 2.44 6.01 -51.93 -0.31 2.13 16 33 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.05 1.10 6.72 -51.93 -0.35 0.75 16 35 H 0.06 1.55 6.09 -51.93 -0.32 1.24 16 36 H 0.32 5.46 9.08 -39.29 -0.36 5.10 16 37 H 0.33 6.28 7.30 -39.29 -0.29 5.99 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -26.65 287.19 -8.59 -35.24 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -5.11 Total: 17.25 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.88 Total: -18.44 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.09 Total: -53.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.65 -8.59 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.590 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds