Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38314 * 120.04112 * 2 1 4 4 C 1.38128 * 120.15383 * 179.97438 * 3 2 1 5 5 C 1.38500 * 120.31259 * 0.02562 * 4 3 2 6 6 C 1.38605 * 119.56242 * 0.14543 * 5 4 3 7 7 C 1.38027 * 120.04833 * 180.02562 * 2 1 3 8 8 N 1.39915 * 120.83868 * 179.54895 * 6 5 4 9 9 C 1.46923 * 118.92393 * 13.51428 * 8 6 5 10 10 C 1.53444 * 107.78996 * 315.32740 * 9 8 6 11 11 C 1.50593 * 118.93100 * 180.16433 * 5 4 3 12 12 C 1.50697 * 109.30018 * 80.32420 * 11 5 4 13 13 H 1.08001 * 120.00174 * 4.90069 * 12 11 5 14 14 C 1.37881 * 120.00002 * 184.90437 * 12 11 5 15 15 N 1.31511 * 119.99987 * 354.82222 * 14 12 11 16 16 Si 1.86803 * 119.99918 * 174.82132 * 14 12 11 17 17 H 1.48500 * 109.46720 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47147 * 299.99698 * 16 14 12 19 19 H 1.48497 * 109.47362 * 60.00135 * 16 14 12 20 20 C 1.52992 * 109.30383 * 320.73440 * 11 5 4 21 21 N 1.46893 * 109.47706 * 305.17401 * 20 11 5 22 22 H 1.08999 * 109.47078 * 89.99918 * 1 2 3 23 23 H 1.09004 * 109.46842 * 210.00237 * 1 2 3 24 24 H 1.09000 * 109.46758 * 330.00039 * 1 2 3 25 25 H 1.07990 * 119.92292 * 359.95109 * 3 2 1 26 26 H 1.08005 * 119.84187 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.97853 * 359.97438 * 7 2 1 28 28 H 0.97000 * 120.54151 * 193.49138 * 8 6 5 29 29 H 1.08997 * 109.79457 * 74.90877 * 9 8 6 30 30 H 1.08994 * 109.79891 * 195.70724 * 9 8 6 31 31 H 1.09002 * 109.57332 * 303.39135 * 10 9 8 32 32 H 1.08994 * 109.57648 * 183.00786 * 10 9 8 33 33 H 0.97000 * 120.00473 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.47332 * 65.17614 * 20 11 5 35 35 H 1.09002 * 109.47549 * 185.16909 * 20 11 5 36 36 H 1.00900 * 111.00664 * 174.77384 * 21 20 11 37 37 H 1.00904 * 111.00250 * 298.73485 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5807 1.2001 0.0005 5 6 4.2821 0.0058 0.0005 6 6 3.5889 -1.1944 -0.0031 7 6 2.1982 -1.1948 -0.0005 8 7 4.2703 -2.4163 -0.0126 9 6 5.7097 -2.4295 0.2817 10 6 6.3587 -1.2798 -0.5002 11 6 5.7875 0.0450 0.0049 12 6 6.2752 0.2946 1.4088 13 1 5.5706 0.3336 2.2263 14 6 7.6210 0.4733 1.6495 15 7 8.4891 0.3253 0.6728 16 14 8.2113 0.9258 3.3631 17 1 9.6903 1.0587 3.3581 18 1 7.5993 2.2151 3.7731 19 1 7.8137 -0.1375 4.3205 20 6 6.2666 1.1773 -0.9057 21 7 5.6836 1.0098 -2.2436 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6589 2.1322 -0.0008 26 1 4.1163 2.1379 0.0010 27 1 1.6586 -2.1303 -0.0005 28 1 3.8001 -3.2415 -0.2100 29 1 5.8693 -2.2857 1.3503 30 1 6.1419 -3.3799 -0.0313 31 1 6.1394 -1.3909 -1.5621 32 1 7.4374 -1.2954 -0.3446 33 1 9.4359 0.4506 0.8422 34 1 5.9532 2.1350 -0.4902 35 1 7.3539 1.1507 -0.9773 36 1 5.9158 1.7901 -2.8396 37 1 5.9761 0.1379 -2.6589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = 6.676848 kcal Electronic energy + Delta-G solvation = -18637.420337 eV Core-core repulsion = 15992.029998 eV Total energy + Delta-G solvation = -2645.390339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94947 -37.90001 -36.19775 -34.15815 -32.87798 -31.89898 -30.23173 -28.06982 -26.96797 -25.56721 -24.04934 -22.60964 -21.83893 -19.96678 -18.09346 -17.76596 -17.00594 -16.66031 -16.13851 -15.84738 -15.01713 -14.98186 -14.67312 -14.34378 -14.18307 -13.90542 -13.56219 -13.41934 -13.03278 -12.83217 -12.76945 -12.72760 -12.46859 -12.37197 -12.03010 -11.89184 -11.05300 -10.94250 -10.92947 -10.48908 -10.26706 -9.21235 -9.04296 -8.09085 -7.81299 -6.14080 0.92042 1.05368 1.40817 1.43287 1.49700 2.45065 2.90682 3.19288 3.33134 4.09785 4.24025 4.28893 4.47104 4.53374 4.62764 4.68786 4.76434 4.88999 4.92599 4.97772 5.01376 5.18348 5.23843 5.31042 5.44063 5.51590 5.56940 5.64658 5.76125 5.88018 6.02575 6.08422 6.26656 6.36588 6.43450 6.62064 6.76411 6.81893 6.97333 7.29578 7.51537 8.95877 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.008486 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.606777 B = 3298.697512 C = 3369.517191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.074 4.074 3 C -0.190 4.190 4 C -0.075 4.075 5 C -0.103 4.103 6 C 0.189 3.811 7 C -0.207 4.207 8 N -0.749 5.749 9 C 0.138 3.862 10 C -0.116 4.116 11 C 0.117 3.883 12 C -0.507 4.507 13 H 0.032 0.968 14 C 0.033 3.967 15 N -0.900 5.900 16 Si 0.936 3.064 17 H -0.282 1.282 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.086 3.914 21 N -0.845 5.845 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.402 0.598 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.331 0.669 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.845 -3.108 -3.310 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.210 4.210 4 C -0.094 4.094 5 C -0.107 4.107 6 C 0.087 3.913 7 C -0.229 4.229 8 N -0.382 5.382 9 C 0.014 3.986 10 C -0.154 4.154 11 C 0.116 3.884 12 C -0.546 4.546 13 H 0.051 0.949 14 C -0.166 4.166 15 N -0.539 5.539 16 Si 0.763 3.237 17 H -0.208 1.208 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.045 4.045 21 N -0.374 5.374 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.238 0.762 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.143 0.857 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.135 -3.064 -2.907 10.064 hybrid contribution 1.725 0.225 0.624 1.848 sum -7.409 -2.839 -2.283 8.257 Atomic orbital electron populations 1.20709 0.89357 1.02992 1.02626 1.19804 0.96898 0.92112 0.98679 1.20842 0.93560 0.97919 1.08704 1.20760 0.94028 0.96868 0.97778 1.19615 0.96441 0.91504 1.03185 1.17853 0.91307 0.86535 0.95572 1.20612 0.91454 0.98539 1.12310 1.44525 1.08454 1.05511 1.79689 1.21348 0.80355 0.98566 0.98360 1.21787 1.01705 0.96012 0.95933 1.16895 0.86851 0.91850 0.92820 1.21175 0.91777 1.48503 0.93165 0.94925 1.25394 0.96785 0.95192 0.99272 1.69883 1.01882 1.49910 1.32214 0.85960 0.77084 0.78637 0.81996 1.20756 1.20586 1.20399 1.21656 0.97224 0.97491 0.88112 1.58885 1.67201 1.06579 1.04688 0.90598 0.91025 0.91129 0.86035 0.88643 0.85305 0.76203 0.94692 0.90027 0.94931 0.90651 0.93061 0.95333 0.94376 0.85730 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 10.01 71.24 0.71 -1.64 16 2 C -0.07 -2.46 5.88 -19.90 -0.12 -2.58 16 3 C -0.19 -7.00 9.70 22.26 0.22 -6.79 16 4 C -0.08 -3.26 8.86 22.31 0.20 -3.06 16 5 C -0.10 -4.65 4.16 -19.75 -0.08 -4.73 16 6 C 0.19 7.67 6.47 38.14 0.25 7.92 16 7 C -0.21 -7.22 9.53 22.42 0.21 -7.01 16 8 N -0.75 -27.11 5.80 -337.69 -1.96 -29.07 16 9 C 0.14 5.48 7.01 86.45 0.61 6.08 16 10 C -0.12 -5.18 4.64 30.70 0.14 -5.03 16 11 C 0.12 5.56 0.23 -53.76 -0.01 5.55 16 12 C -0.51 -27.07 7.04 25.60 0.18 -26.89 16 13 H 0.03 1.84 7.74 -2.91 -0.02 1.82 16 14 C 0.03 1.73 5.10 84.66 0.43 2.16 16 15 N -0.90 -47.50 9.36 21.45 0.20 -47.30 16 16 Si 0.94 42.77 29.54 68.60 2.03 44.79 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C 0.09 3.99 4.75 86.30 0.41 4.40 16 21 N -0.84 -33.05 8.78 -186.74 -1.64 -34.69 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 24 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 25 H 0.12 3.85 8.06 -2.92 -0.02 3.83 16 26 H 0.10 4.29 6.46 -2.91 -0.02 4.27 16 27 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.40 11.70 8.86 -92.71 -0.82 10.88 16 29 H 0.03 1.57 7.39 -2.39 -0.02 1.55 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.03 1.39 6.47 -2.39 -0.02 1.37 16 32 H 0.08 3.75 6.01 -2.39 -0.01 3.73 16 33 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 34 H 0.03 1.39 6.72 -2.39 -0.02 1.38 16 35 H 0.04 1.95 6.09 -2.39 -0.01 1.94 16 36 H 0.33 11.33 9.08 -89.69 -0.81 10.51 16 37 H 0.33 12.61 7.30 -89.69 -0.65 11.96 16 Total: -1.00 -57.78 287.19 0.59 -57.19 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -1.18 Total: 40.70 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.15 Total: -31.62 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -3.40 Total: -111.06 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -57.78 0.59 -57.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.866 kcal (2) G-P(sol) polarization free energy of solvation -57.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds