Wall clock time and date at job start Mon Mar 30 2020 04:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48527 * 110.99720 * 2 1 4 4 C 1.54933 * 103.22760 * 200.28036 * 3 2 1 5 5 C 1.54595 * 102.92003 * 37.41545 * 4 3 2 6 6 H 1.09002 * 110.30922 * 96.96044 * 5 4 3 7 7 C 1.50698 * 110.30910 * 219.12477 * 5 4 3 8 8 H 1.08010 * 119.99651 * 115.72049 * 7 5 4 9 9 C 1.37874 * 120.00375 * 295.71797 * 7 5 4 10 10 N 1.31513 * 120.00032 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 120.00198 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47133 * 59.99620 * 11 9 7 13 13 H 1.48495 * 109.46833 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46406 * 299.99721 * 11 9 7 15 15 C 1.47902 * 110.99459 * 242.60908 * 2 1 3 16 16 H 1.09000 * 109.92106 * 26.29051 * 15 2 1 17 17 C 1.53005 * 109.91337 * 265.19106 * 15 2 1 18 18 C 1.50703 * 109.47006 * 66.46056 * 17 15 2 19 19 C 1.38675 * 120.41865 * 89.99546 * 18 17 15 20 20 C 1.38629 * 118.41929 * 179.72534 * 19 18 17 21 21 C 1.38221 * 119.16236 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.76536 * 359.97438 * 21 20 19 23 23 C 1.31888 * 121.72133 * 0.02562 * 22 21 20 24 24 H 1.09005 * 109.47549 * 177.39447 * 1 2 3 25 25 H 1.08999 * 109.47036 * 297.39347 * 1 2 3 26 26 H 1.08997 * 109.47684 * 57.39551 * 1 2 3 27 27 H 1.08995 * 110.67157 * 318.71930 * 3 2 1 28 28 H 1.09007 * 110.66961 * 81.84740 * 3 2 1 29 29 H 1.08998 * 110.72817 * 155.77303 * 4 3 2 30 30 H 1.09005 * 110.72746 * 278.87991 * 4 3 2 31 31 H 0.96995 * 120.00162 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47257 * 306.45836 * 17 15 2 33 33 H 1.09002 * 109.46713 * 186.45509 * 17 15 2 34 34 H 1.08003 * 120.78833 * 359.74916 * 19 18 17 35 35 H 1.07999 * 120.41849 * 180.02562 * 20 19 18 36 36 H 1.07992 * 119.62125 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.61498 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5931 6 1 3.2135 0.5487 -2.5853 7 6 4.4716 -0.8385 -1.5392 8 1 4.3202 -1.8735 -1.2698 9 6 5.7385 -0.3812 -1.8339 10 7 5.9228 0.8788 -2.1625 11 14 7.1929 -1.5516 -1.7678 12 1 6.9792 -2.6616 -2.7307 13 1 8.4343 -0.8190 -2.1250 14 1 7.3213 -2.1044 -0.3955 15 6 1.9989 -0.6353 -1.2260 16 1 1.2742 -0.5432 -2.0350 17 6 2.2982 -2.1120 -0.9602 18 6 1.0086 -2.8469 -0.6995 19 6 0.3035 -3.4207 -1.7467 20 6 -0.8749 -4.0920 -1.4591 21 6 -1.3050 -4.1660 -0.1476 22 7 -0.6085 -3.6081 0.8232 23 6 0.5165 -2.9619 0.5865 24 1 -0.3634 -1.0266 -0.0467 25 1 -0.3633 0.4728 0.9124 26 1 -0.3634 0.5537 -0.8657 27 1 1.4236 2.0205 -0.6728 28 1 2.0041 1.7977 1.0096 29 1 3.8122 2.1352 -0.9716 30 1 4.1122 0.8867 0.2794 31 1 6.8140 1.2005 -2.3702 32 1 2.9488 -2.2000 -0.0901 33 1 2.7936 -2.5445 -1.8295 34 1 0.6640 -3.3468 -2.7621 35 1 -1.4495 -4.5512 -2.2498 36 1 -2.2222 -4.6867 0.0847 37 1 1.0600 -2.5182 1.4076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:56 Heat of formation + Delta-G solvation = 41.533617 kcal Electronic energy + Delta-G solvation = -18220.544877 eV Core-core repulsion = 15576.666041 eV Total energy + Delta-G solvation = -2643.878836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05870 -38.22452 -33.40152 -33.15741 -31.66276 -30.65370 -29.00554 -26.07542 -24.56111 -23.67522 -23.21627 -21.64851 -19.99251 -19.01867 -16.86576 -16.16569 -15.95845 -15.22732 -14.64673 -14.53014 -14.28888 -13.89061 -13.24919 -13.00955 -12.76863 -12.74423 -12.27612 -11.88908 -11.73850 -11.34770 -11.18528 -10.88813 -10.65431 -10.44629 -10.40222 -10.08148 -9.69444 -9.57353 -9.27876 -9.07335 -8.82884 -8.41894 -8.36028 -7.71332 -6.02830 -4.04804 1.41741 1.56560 3.31310 3.36553 3.38938 4.10392 4.42836 4.70686 4.73814 5.06974 5.24422 5.29406 5.33192 5.40807 5.63224 5.71510 5.81051 5.85960 6.03319 6.07953 6.13091 6.19629 6.26453 6.34805 6.35738 6.44154 6.68657 6.82558 6.93265 7.04762 7.14957 7.19571 7.46103 7.60378 7.81172 7.88180 8.00998 8.25057 8.39722 8.95287 9.59677 11.07422 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.007413 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.078997 B = 3776.247874 C = 4524.455768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.028 3.972 4 C -0.092 4.092 5 C 0.046 3.954 6 H 0.030 0.970 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.082 3.918 16 H 0.028 0.972 17 C -0.051 4.051 18 C -0.114 4.114 19 C -0.086 4.086 20 C -0.177 4.177 21 C 0.074 3.926 22 N -0.491 5.491 23 C 0.110 3.890 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -5.049 1.499 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.237 5.237 3 C -0.100 4.100 4 C -0.130 4.130 5 C 0.027 3.973 6 H 0.048 0.952 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.026 4.026 16 H 0.046 0.954 17 C -0.090 4.090 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.196 4.196 21 C -0.083 4.083 22 N -0.199 5.199 23 C -0.047 4.047 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.608 -5.272 2.772 12.166 hybrid contribution 0.723 0.014 -1.682 1.831 sum -9.886 -5.257 1.089 11.249 Atomic orbital electron populations 1.22622 0.90007 1.01339 0.99546 1.64602 1.05857 1.15239 1.38049 1.23345 0.98253 0.88968 0.99390 1.22409 0.91640 0.99772 0.99196 1.19495 0.90315 0.92882 0.94568 0.95188 1.21413 0.91253 0.96345 1.46605 0.90996 1.24993 0.98848 0.94940 0.95091 1.69960 1.22225 1.14155 1.46517 0.86737 0.82141 0.81056 0.78553 1.20359 1.21471 1.20199 1.22432 0.97655 0.93690 0.88867 0.95352 1.20778 0.90931 0.93567 1.03685 1.21496 0.98983 0.97084 0.94025 1.21569 0.94296 0.95631 0.99688 1.22041 0.97844 1.01600 0.98162 1.22581 0.99000 0.97712 0.88993 1.67690 1.07096 1.08631 1.36511 1.22761 0.91718 0.93952 0.96226 0.91758 0.92390 0.96628 0.95397 0.91759 0.92357 0.91885 0.93076 0.89293 0.89685 0.85208 0.85585 0.83667 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.91 60.07 0.54 0.76 16 2 N -0.51 -9.55 4.94 -230.79 -1.14 -10.69 16 3 C 0.03 0.53 6.56 -1.90 -0.01 0.52 16 4 C -0.09 -2.06 5.74 -24.87 -0.14 -2.21 16 5 C 0.05 1.09 2.87 -90.42 -0.26 0.83 16 6 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.52 -13.14 7.51 -34.44 -0.26 -13.39 16 8 H 0.07 1.74 4.70 -52.48 -0.25 1.50 16 9 C 0.06 1.67 5.34 -17.82 -0.10 1.58 16 10 N -0.89 -24.74 12.63 55.43 0.70 -24.04 16 11 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 C 0.08 1.62 2.60 -66.64 -0.17 1.44 16 16 H 0.03 0.56 7.73 -51.93 -0.40 0.16 16 17 C -0.05 -0.95 3.53 -27.88 -0.10 -1.04 16 18 C -0.11 -1.84 3.94 -104.48 -0.41 -2.25 16 19 C -0.09 -1.23 9.86 -39.28 -0.39 -1.62 16 20 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 21 C 0.07 0.97 11.18 -17.55 -0.20 0.78 16 22 N -0.49 -7.67 10.36 -13.25 -0.14 -7.81 16 23 C 0.11 1.77 8.33 -17.55 -0.15 1.62 16 24 H 0.06 1.05 4.64 -51.93 -0.24 0.81 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.02 0.25 8.00 -51.93 -0.42 -0.17 16 27 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 30 H 0.06 1.53 7.86 -51.93 -0.41 1.12 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 1.75 7.24 -51.93 -0.38 1.38 16 33 H 0.08 1.61 6.88 -51.93 -0.36 1.25 16 34 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -27.36 293.38 -8.60 -35.96 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.38 Total: 2.17 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.05 Total: -15.58 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.58 Total: -42.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.36 -8.60 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.493 kcal (2) G-P(sol) polarization free energy of solvation -27.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds