Wall clock time and date at job start Mon Mar 30 2020 04:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48527 * 110.99720 * 2 1 4 4 C 1.54933 * 103.22760 * 200.28036 * 3 2 1 5 5 C 1.54595 * 102.92003 * 37.41545 * 4 3 2 6 6 H 1.09002 * 110.30922 * 96.96044 * 5 4 3 7 7 C 1.50698 * 110.30910 * 219.12477 * 5 4 3 8 8 H 1.08010 * 119.99651 * 115.72049 * 7 5 4 9 9 C 1.37874 * 120.00375 * 295.71797 * 7 5 4 10 10 N 1.31513 * 120.00032 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 120.00198 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47133 * 59.99620 * 11 9 7 13 13 H 1.48495 * 109.46833 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46406 * 299.99721 * 11 9 7 15 15 C 1.47902 * 110.99459 * 242.60908 * 2 1 3 16 16 H 1.09000 * 109.92106 * 26.29051 * 15 2 1 17 17 C 1.53005 * 109.91337 * 265.19106 * 15 2 1 18 18 C 1.50703 * 109.47006 * 66.46056 * 17 15 2 19 19 C 1.38675 * 120.41865 * 89.99546 * 18 17 15 20 20 C 1.38629 * 118.41929 * 179.72534 * 19 18 17 21 21 C 1.38221 * 119.16236 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.76536 * 359.97438 * 21 20 19 23 23 C 1.31888 * 121.72133 * 0.02562 * 22 21 20 24 24 H 1.09005 * 109.47549 * 177.39447 * 1 2 3 25 25 H 1.08999 * 109.47036 * 297.39347 * 1 2 3 26 26 H 1.08997 * 109.47684 * 57.39551 * 1 2 3 27 27 H 1.08995 * 110.67157 * 318.71930 * 3 2 1 28 28 H 1.09007 * 110.66961 * 81.84740 * 3 2 1 29 29 H 1.08998 * 110.72817 * 155.77303 * 4 3 2 30 30 H 1.09005 * 110.72746 * 278.87991 * 4 3 2 31 31 H 0.96995 * 120.00162 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47257 * 306.45836 * 17 15 2 33 33 H 1.09002 * 109.46713 * 186.45509 * 17 15 2 34 34 H 1.08003 * 120.78833 * 359.74916 * 19 18 17 35 35 H 1.07999 * 120.41849 * 180.02562 * 20 19 18 36 36 H 1.07992 * 119.62125 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.61498 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2982 0.1054 -1.5931 6 1 3.2135 0.5487 -2.5853 7 6 4.4716 -0.8385 -1.5392 8 1 4.3202 -1.8735 -1.2698 9 6 5.7385 -0.3812 -1.8339 10 7 5.9228 0.8788 -2.1625 11 14 7.1929 -1.5516 -1.7678 12 1 6.9792 -2.6616 -2.7307 13 1 8.4343 -0.8190 -2.1250 14 1 7.3213 -2.1044 -0.3955 15 6 1.9989 -0.6353 -1.2260 16 1 1.2742 -0.5432 -2.0350 17 6 2.2982 -2.1120 -0.9602 18 6 1.0086 -2.8469 -0.6995 19 6 0.3035 -3.4207 -1.7467 20 6 -0.8749 -4.0920 -1.4591 21 6 -1.3050 -4.1660 -0.1476 22 7 -0.6085 -3.6081 0.8232 23 6 0.5165 -2.9619 0.5865 24 1 -0.3634 -1.0266 -0.0467 25 1 -0.3633 0.4728 0.9124 26 1 -0.3634 0.5537 -0.8657 27 1 1.4236 2.0205 -0.6728 28 1 2.0041 1.7977 1.0096 29 1 3.8122 2.1352 -0.9716 30 1 4.1122 0.8867 0.2794 31 1 6.8140 1.2005 -2.3702 32 1 2.9488 -2.2000 -0.0901 33 1 2.7936 -2.5445 -1.8295 34 1 0.6640 -3.3468 -2.7621 35 1 -1.4495 -4.5512 -2.2498 36 1 -2.2222 -4.6867 0.0847 37 1 1.0600 -2.5182 1.4076 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260505678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:56 Heat of formation + Delta-G solvation = 25.206309 kcal Electronic energy + Delta-G solvation = -18221.252882 eV Core-core repulsion = 15576.666041 eV Total energy + Delta-G solvation = -2644.586841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26863 -39.75707 -35.12348 -34.62932 -32.77890 -32.42771 -30.44993 -27.75771 -26.05804 -25.38355 -24.33623 -22.89933 -21.68600 -20.74418 -18.21547 -17.66650 -17.20850 -16.86558 -16.35346 -16.03486 -15.65057 -15.31906 -14.60988 -14.41681 -14.28961 -13.85776 -13.74005 -13.50881 -13.39426 -12.90122 -12.76399 -12.61768 -12.42480 -12.04948 -11.92700 -11.76964 -11.53758 -11.13141 -10.73690 -10.50965 -10.44330 -10.24123 -9.67798 -9.19236 -8.06830 -6.13125 0.31879 0.45261 1.45269 1.46411 1.52640 2.47685 2.98436 3.21507 3.26333 3.66209 3.95627 4.08179 4.19517 4.22542 4.26318 4.27544 4.39520 4.46728 4.58253 4.67765 4.74097 4.82040 4.88415 4.95850 5.03569 5.08252 5.20961 5.30576 5.36386 5.49094 5.57847 5.62166 5.74585 5.90112 5.93601 6.20714 6.31169 6.43604 6.94712 7.14626 7.54039 9.03262 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.007413 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.078997 B = 3776.247874 C = 4524.455768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.516 5.516 3 C 0.038 3.962 4 C -0.085 4.085 5 C 0.037 3.963 6 H -0.004 1.004 7 C -0.522 4.522 8 H 0.081 0.919 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.092 3.908 16 H 0.029 0.971 17 C -0.039 4.039 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.165 4.165 21 C 0.075 3.925 22 N -0.509 5.509 23 C 0.103 3.897 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 -6.721 1.705 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.241 5.241 3 C -0.089 4.089 4 C -0.124 4.124 5 C 0.018 3.982 6 H 0.015 0.985 7 C -0.560 4.560 8 H 0.099 0.901 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.772 3.228 12 H -0.195 1.195 13 H -0.218 1.218 14 H -0.198 1.198 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.077 4.077 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.184 4.184 21 C -0.082 4.082 22 N -0.218 5.218 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.656 -6.955 2.986 14.746 hybrid contribution 1.256 0.498 -1.772 2.228 sum -11.399 -6.456 1.214 13.157 Atomic orbital electron populations 1.22623 0.88057 1.01793 1.00502 1.64610 1.07635 1.14665 1.37144 1.23252 0.95589 0.89614 1.00464 1.22175 0.93782 0.98317 0.98083 1.19477 0.92112 0.93375 0.93198 0.98547 1.21824 0.91849 0.97068 1.45219 0.90142 1.25732 1.01462 0.96236 0.95255 1.70098 1.22417 1.15779 1.48084 0.85796 0.79006 0.79291 0.78694 1.19487 1.21765 1.19760 1.22220 0.95572 0.94388 0.89488 0.95290 1.20463 0.92190 0.92849 1.02217 1.21190 0.98406 0.98537 0.94894 1.21791 0.94869 0.95378 0.99666 1.22396 0.96919 1.00177 0.98953 1.23214 0.99501 0.96563 0.88901 1.67716 1.07136 1.09249 1.37690 1.22586 0.92236 0.94638 0.95846 0.91524 0.90738 0.96290 0.94482 0.89794 0.94480 0.94129 0.93449 0.91216 0.90763 0.84241 0.81947 0.80347 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.91 127.69 1.14 1.72 16 2 N -0.52 -18.78 4.94 -884.07 -4.37 -23.15 16 3 C 0.04 1.43 6.56 86.65 0.57 2.00 16 4 C -0.08 -3.95 5.74 31.80 0.18 -3.77 16 5 C 0.04 1.82 2.87 -10.66 -0.03 1.79 16 6 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 7 C -0.52 -27.10 7.51 25.60 0.19 -26.91 16 8 H 0.08 3.97 4.70 -2.91 -0.01 3.95 16 9 C 0.01 0.62 5.34 84.65 0.45 1.07 16 10 N -0.92 -53.09 12.63 21.45 0.27 -52.82 16 11 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.09 3.64 2.60 45.06 0.12 3.76 16 16 H 0.03 1.14 7.73 -2.39 -0.02 1.12 16 17 C -0.04 -1.43 3.53 29.85 0.11 -1.32 16 18 C -0.13 -3.98 3.94 -19.77 -0.08 -4.06 16 19 C -0.09 -2.38 9.86 22.47 0.22 -2.16 16 20 C -0.17 -3.47 10.11 22.36 0.23 -3.24 16 21 C 0.07 1.69 11.18 84.68 0.95 2.64 16 22 N -0.51 -14.69 10.36 -195.85 -2.03 -16.72 16 23 C 0.10 3.18 8.33 84.67 0.71 3.88 16 24 H 0.07 2.04 4.64 -2.38 -0.01 2.03 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.02 0.57 8.00 -2.39 -0.02 0.55 16 27 H 0.04 1.32 7.96 -2.39 -0.02 1.30 16 28 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.04 1.83 8.12 -2.39 -0.02 1.81 16 30 H 0.04 2.03 7.86 -2.38 -0.02 2.01 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.07 2.80 7.24 -2.39 -0.02 2.78 16 33 H 0.07 2.83 6.88 -2.39 -0.02 2.82 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -59.71 293.38 1.69 -58.02 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.04 Total: 14.36 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.75 Total: -24.61 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -6.13 Total: -92.69 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -59.71 1.69 -58.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.227 kcal (2) G-P(sol) polarization free energy of solvation -59.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds