Wall clock time and date at job start Mon Mar 30 2020 04:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48538 * 111.00084 * 2 1 4 4 C 1.54935 * 103.22467 * 159.72231 * 3 2 1 5 5 C 1.54597 * 102.92243 * 322.58489 * 4 3 2 6 6 H 1.08996 * 110.31626 * 263.04126 * 5 4 3 7 7 C 1.50704 * 110.31000 * 140.87315 * 5 4 3 8 8 H 1.07998 * 120.00286 * 244.29142 * 7 5 4 9 9 C 1.37876 * 119.99506 * 64.28395 * 7 5 4 10 10 N 1.31511 * 120.00472 * 0.02562 * 9 7 5 11 11 Si 1.86810 * 119.99850 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47210 * 90.00079 * 11 9 7 13 13 H 1.48498 * 109.47029 * 210.00490 * 11 9 7 14 14 H 1.48499 * 109.46859 * 330.00268 * 11 9 7 15 15 C 1.47898 * 111.00022 * 117.39935 * 2 1 3 16 16 H 1.09002 * 109.91589 * 333.50761 * 15 2 1 17 17 C 1.52999 * 109.91569 * 94.60496 * 15 2 1 18 18 C 1.50699 * 109.47283 * 293.19481 * 17 15 2 19 19 C 1.38673 * 120.41843 * 89.99991 * 18 17 15 20 20 C 1.38624 * 118.41925 * 180.02562 * 19 18 17 21 21 C 1.38223 * 119.16399 * 359.97438 * 20 19 18 22 22 N 1.31854 * 120.76488 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72440 * 359.70790 * 22 21 20 24 24 H 1.09001 * 109.46979 * 302.60300 * 1 2 3 25 25 H 1.09005 * 109.47299 * 62.60081 * 1 2 3 26 26 H 1.09000 * 109.47314 * 182.59658 * 1 2 3 27 27 H 1.09001 * 110.66911 * 278.15528 * 3 2 1 28 28 H 1.08997 * 110.66543 * 41.29072 * 3 2 1 29 29 H 1.08993 * 110.72793 * 80.94577 * 4 3 2 30 30 H 1.09005 * 110.72207 * 204.05494 * 4 3 2 31 31 H 0.97002 * 120.00056 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.47215 * 53.19806 * 17 15 2 33 33 H 1.09009 * 109.47181 * 173.20039 * 17 15 2 34 34 H 1.08005 * 120.78674 * 0.02654 * 19 18 17 35 35 H 1.08002 * 120.41496 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.62055 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.61764 * 180.30916 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5227 5 6 3.2982 0.1053 1.5930 6 1 3.2136 0.5484 2.5853 7 6 4.4716 -0.8389 1.5390 8 1 4.3202 -1.8736 1.2694 9 6 5.7385 -0.3815 1.8337 10 7 5.9229 0.8785 2.1624 11 14 7.1932 -1.5516 1.7661 12 1 7.7756 -1.5388 0.4002 13 1 8.2214 -1.1202 2.7468 14 1 6.7387 -2.9259 2.0976 15 6 1.9990 -0.6354 1.2259 16 1 1.2758 -0.5403 2.0358 17 6 2.2936 -2.1133 0.9612 18 6 1.0008 -2.8464 0.7119 19 6 0.4944 -2.9594 -0.5741 20 6 -0.6982 -3.6422 -0.7560 21 6 -1.3383 -4.1843 0.3426 22 7 -0.8274 -4.0573 1.5515 23 6 0.3075 -3.4190 1.7612 24 1 -0.3633 0.5537 0.8657 25 1 -0.3634 0.4729 -0.9124 26 1 -0.3634 -1.0266 0.0466 27 1 2.0041 1.7977 -1.0095 28 1 1.4238 2.0204 0.6730 29 1 4.1115 0.8836 -0.2787 30 1 3.8134 2.1360 0.9689 31 1 6.8141 1.2001 2.3700 32 1 2.9375 -2.2044 0.0866 33 1 2.7946 -2.5448 1.8279 34 1 1.0169 -2.5257 -1.4140 35 1 -1.1219 -3.7491 -1.7437 36 1 -2.2677 -4.7181 0.2094 37 1 0.6976 -3.3397 2.7651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260505693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:01 Heat of formation + Delta-G solvation = 41.167834 kcal Electronic energy + Delta-G solvation = -18216.689980 eV Core-core repulsion = 15572.795283 eV Total energy + Delta-G solvation = -2643.894697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05827 -38.23950 -33.33028 -33.22906 -31.72079 -30.60579 -29.02389 -26.08883 -24.55435 -23.67734 -23.22191 -21.64737 -20.02474 -19.02242 -16.85329 -16.12788 -15.98994 -15.22531 -14.63273 -14.59810 -14.28529 -13.83210 -13.34239 -13.03746 -12.78937 -12.65738 -12.29867 -11.91285 -11.66997 -11.53683 -11.10767 -10.90072 -10.65784 -10.56509 -10.32372 -10.07443 -9.70358 -9.40463 -9.33485 -9.09885 -8.82621 -8.42717 -8.38268 -7.73222 -6.02919 -4.04817 1.39616 1.59053 3.30176 3.37598 3.39684 4.09431 4.42895 4.69820 4.70739 5.09336 5.26012 5.30089 5.34509 5.40019 5.61254 5.72289 5.78543 5.85967 5.98010 6.06298 6.12551 6.18098 6.24421 6.36398 6.40609 6.42875 6.66789 6.82596 6.95220 7.04585 7.13250 7.18514 7.45303 7.59613 7.79782 7.88151 8.00773 8.22345 8.39629 8.95584 9.59744 11.07347 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.007409 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.086581 B = 3778.081327 C = 4531.651434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.514 5.514 3 C 0.028 3.972 4 C -0.092 4.092 5 C 0.046 3.954 6 H 0.031 0.969 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.081 3.919 16 H 0.029 0.971 17 C -0.051 4.051 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.180 4.180 21 C 0.075 3.925 22 N -0.490 5.490 23 C 0.088 3.912 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -4.456 -4.821 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.238 5.238 3 C -0.100 4.100 4 C -0.130 4.130 5 C 0.027 3.973 6 H 0.049 0.951 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.139 4.139 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.027 4.027 16 H 0.047 0.953 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.199 4.199 21 C -0.082 4.082 22 N -0.198 5.198 23 C -0.069 4.069 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.498 -4.983 -4.511 12.465 hybrid contribution 0.887 0.384 -0.102 0.972 sum -9.611 -4.599 -4.613 11.610 Atomic orbital electron populations 1.22660 0.90080 1.01514 0.99502 1.64604 1.05831 1.15181 1.38155 1.23348 0.98307 0.89013 0.99325 1.22409 0.91600 0.99790 0.99221 1.19504 0.90344 0.92866 0.94597 0.95112 1.21445 0.91230 0.96370 1.46465 0.90947 1.24996 0.98870 0.94947 0.95094 1.69973 1.22098 1.14173 1.46611 0.86674 0.82690 0.81378 0.77747 1.20774 1.21427 1.19855 1.22431 0.97711 0.93660 0.88856 0.95261 1.20761 0.90875 0.93555 1.03741 1.21480 0.99152 0.97237 0.93687 1.21579 0.94675 0.94944 0.97619 1.22097 0.97136 1.00535 1.00182 1.22573 0.99394 0.98123 0.88148 1.67623 1.12060 1.15509 1.24608 1.22718 0.90742 0.94032 0.99393 0.96588 0.92528 0.91533 0.91842 0.95371 0.91951 0.92339 0.93137 0.89475 0.89529 0.84582 0.85514 0.83664 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.91 60.06 0.54 0.72 16 2 N -0.51 -9.41 4.95 -230.78 -1.14 -10.56 16 3 C 0.03 0.52 6.56 -1.90 -0.01 0.51 16 4 C -0.09 -2.06 5.75 -24.87 -0.14 -2.20 16 5 C 0.05 1.08 2.87 -90.41 -0.26 0.82 16 6 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.52 -13.10 7.51 -34.44 -0.26 -13.36 16 8 H 0.07 1.76 4.72 -52.49 -0.25 1.51 16 9 C 0.06 1.66 5.34 -17.82 -0.10 1.57 16 10 N -0.89 -24.75 12.63 55.43 0.70 -24.05 16 11 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.08 1.61 2.59 -66.64 -0.17 1.44 16 16 H 0.03 0.58 7.73 -51.93 -0.40 0.18 16 17 C -0.05 -0.94 3.54 -27.88 -0.10 -1.03 16 18 C -0.11 -1.82 3.96 -104.48 -0.41 -2.23 16 19 C -0.06 -0.90 7.28 -39.28 -0.29 -1.18 16 20 C -0.18 -2.24 10.10 -39.44 -0.40 -2.64 16 21 C 0.07 0.99 11.18 -17.55 -0.20 0.79 16 22 N -0.49 -7.63 10.36 -13.25 -0.14 -7.77 16 23 C 0.09 1.38 10.86 -17.55 -0.19 1.19 16 24 H 0.02 0.25 8.00 -51.93 -0.42 -0.16 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.04 4.57 -51.93 -0.24 0.80 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 29 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 30 H 0.06 1.39 8.12 -51.93 -0.42 0.96 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.09 1.71 7.28 -51.93 -0.38 1.33 16 33 H 0.09 1.64 6.86 -51.92 -0.36 1.28 16 34 H 0.14 1.93 8.06 -52.48 -0.42 1.50 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -27.47 293.33 -8.54 -36.02 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.37 Total: 1.98 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.99 Total: -15.62 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.58 Total: -42.38 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.47 -8.54 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.187 kcal (2) G-P(sol) polarization free energy of solvation -27.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds