Wall clock time and date at job start Mon Mar 30 2020 04:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48538 * 111.00084 * 2 1 4 4 C 1.54935 * 103.22467 * 159.72231 * 3 2 1 5 5 C 1.54597 * 102.92243 * 322.58489 * 4 3 2 6 6 H 1.08996 * 110.31626 * 263.04126 * 5 4 3 7 7 C 1.50704 * 110.31000 * 140.87315 * 5 4 3 8 8 H 1.07998 * 120.00286 * 244.29142 * 7 5 4 9 9 C 1.37876 * 119.99506 * 64.28395 * 7 5 4 10 10 N 1.31511 * 120.00472 * 0.02562 * 9 7 5 11 11 Si 1.86810 * 119.99850 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47210 * 90.00079 * 11 9 7 13 13 H 1.48498 * 109.47029 * 210.00490 * 11 9 7 14 14 H 1.48499 * 109.46859 * 330.00268 * 11 9 7 15 15 C 1.47898 * 111.00022 * 117.39935 * 2 1 3 16 16 H 1.09002 * 109.91589 * 333.50761 * 15 2 1 17 17 C 1.52999 * 109.91569 * 94.60496 * 15 2 1 18 18 C 1.50699 * 109.47283 * 293.19481 * 17 15 2 19 19 C 1.38673 * 120.41843 * 89.99991 * 18 17 15 20 20 C 1.38624 * 118.41925 * 180.02562 * 19 18 17 21 21 C 1.38223 * 119.16399 * 359.97438 * 20 19 18 22 22 N 1.31854 * 120.76488 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72440 * 359.70790 * 22 21 20 24 24 H 1.09001 * 109.46979 * 302.60300 * 1 2 3 25 25 H 1.09005 * 109.47299 * 62.60081 * 1 2 3 26 26 H 1.09000 * 109.47314 * 182.59658 * 1 2 3 27 27 H 1.09001 * 110.66911 * 278.15528 * 3 2 1 28 28 H 1.08997 * 110.66543 * 41.29072 * 3 2 1 29 29 H 1.08993 * 110.72793 * 80.94577 * 4 3 2 30 30 H 1.09005 * 110.72207 * 204.05494 * 4 3 2 31 31 H 0.97002 * 120.00056 * 179.97438 * 10 9 7 32 32 H 1.08994 * 109.47215 * 53.19806 * 17 15 2 33 33 H 1.09009 * 109.47181 * 173.20039 * 17 15 2 34 34 H 1.08005 * 120.78674 * 0.02654 * 19 18 17 35 35 H 1.08002 * 120.41496 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.62055 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.61764 * 180.30916 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5227 5 6 3.2982 0.1053 1.5930 6 1 3.2136 0.5484 2.5853 7 6 4.4716 -0.8389 1.5390 8 1 4.3202 -1.8736 1.2694 9 6 5.7385 -0.3815 1.8337 10 7 5.9229 0.8785 2.1624 11 14 7.1932 -1.5516 1.7661 12 1 7.7756 -1.5388 0.4002 13 1 8.2214 -1.1202 2.7468 14 1 6.7387 -2.9259 2.0976 15 6 1.9990 -0.6354 1.2259 16 1 1.2758 -0.5403 2.0358 17 6 2.2936 -2.1133 0.9612 18 6 1.0008 -2.8464 0.7119 19 6 0.4944 -2.9594 -0.5741 20 6 -0.6982 -3.6422 -0.7560 21 6 -1.3383 -4.1843 0.3426 22 7 -0.8274 -4.0573 1.5515 23 6 0.3075 -3.4190 1.7612 24 1 -0.3633 0.5537 0.8657 25 1 -0.3634 0.4729 -0.9124 26 1 -0.3634 -1.0266 0.0466 27 1 2.0041 1.7977 -1.0095 28 1 1.4238 2.0204 0.6730 29 1 4.1115 0.8836 -0.2787 30 1 3.8134 2.1360 0.9689 31 1 6.8141 1.2001 2.3700 32 1 2.9375 -2.2044 0.0866 33 1 2.7946 -2.5448 1.8279 34 1 1.0169 -2.5257 -1.4140 35 1 -1.1219 -3.7491 -1.7437 36 1 -2.2677 -4.7181 0.2094 37 1 0.6976 -3.3397 2.7651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260505693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:01 Heat of formation + Delta-G solvation = 24.783294 kcal Electronic energy + Delta-G solvation = -18217.400467 eV Core-core repulsion = 15572.795283 eV Total energy + Delta-G solvation = -2644.605184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26374 -39.76341 -35.12120 -34.61685 -32.91817 -32.29484 -30.46661 -27.75618 -26.05300 -25.36728 -24.33819 -22.89289 -21.70481 -20.74706 -18.20049 -17.66845 -17.19376 -16.88224 -16.34736 -16.03087 -15.68401 -15.23846 -14.62736 -14.49325 -14.30228 -13.80519 -13.72102 -13.53211 -13.25278 -13.09080 -12.85937 -12.53610 -12.34409 -12.10454 -11.95741 -11.73245 -11.54182 -11.10909 -10.73597 -10.45880 -10.40337 -10.24490 -9.71827 -9.21428 -8.07183 -6.13472 0.30120 0.47641 1.43961 1.45917 1.54252 2.47457 2.97928 3.21769 3.26149 3.64584 3.95104 4.10142 4.19927 4.23087 4.27525 4.28534 4.39854 4.48170 4.59503 4.68695 4.70097 4.85275 4.90613 4.97085 5.02820 5.06052 5.20597 5.33038 5.35698 5.49828 5.58915 5.65262 5.74489 5.89307 5.92980 6.20195 6.31270 6.43108 6.94728 7.12627 7.53772 9.03121 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.007409 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.086581 B = 3778.081327 C = 4531.651434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.513 5.513 3 C 0.038 3.962 4 C -0.085 4.085 5 C 0.036 3.964 6 H -0.006 1.006 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.091 3.909 16 H 0.025 0.975 17 C -0.038 4.038 18 C -0.126 4.126 19 C -0.065 4.065 20 C -0.166 4.166 21 C 0.076 3.924 22 N -0.510 5.510 23 C 0.076 3.924 24 H 0.013 0.987 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.256 0.744 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 -5.871 -6.587 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.237 5.237 3 C -0.090 4.090 4 C -0.123 4.123 5 C 0.017 3.983 6 H 0.012 0.988 7 C -0.558 4.558 8 H 0.099 0.901 9 C -0.188 4.188 10 N -0.564 5.564 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.189 1.189 15 C -0.017 4.017 16 H 0.043 0.957 17 C -0.077 4.077 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.186 4.186 21 C -0.081 4.081 22 N -0.219 5.219 23 C -0.080 4.080 24 H 0.032 0.968 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.182 0.818 36 H 0.196 0.804 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.453 -6.410 -6.279 15.349 hybrid contribution 1.396 0.803 0.431 1.668 sum -11.057 -5.607 -5.848 13.707 Atomic orbital electron populations 1.22695 0.87957 1.02155 1.00544 1.64618 1.07729 1.14486 1.36879 1.23258 0.95502 0.89695 1.00498 1.22171 0.93884 0.98206 0.98076 1.19487 0.92177 0.93441 0.93184 0.98754 1.21848 0.91804 0.97063 1.45087 0.90111 1.25741 1.01505 0.96250 0.95262 1.70108 1.22338 1.15818 1.48175 0.85728 0.79585 0.79871 0.77537 1.20480 1.21722 1.18855 1.22208 0.95517 0.94443 0.89543 0.95699 1.20440 0.92188 0.92736 1.02290 1.21168 0.98373 0.98441 0.94858 1.21686 0.95478 0.95156 0.96750 1.22433 0.95805 0.98589 1.01723 1.23210 1.00184 0.97289 0.87454 1.67660 1.11993 1.15999 1.26217 1.22701 0.91256 0.94601 0.99409 0.96827 0.90208 0.91001 0.89562 0.94673 0.94034 0.94578 0.93463 0.90934 0.91062 0.84268 0.81846 0.80359 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 8.91 127.69 1.14 1.57 16 2 N -0.51 -18.10 4.95 -884.07 -4.38 -22.47 16 3 C 0.04 1.40 6.56 86.65 0.57 1.96 16 4 C -0.08 -3.92 5.75 31.80 0.18 -3.73 16 5 C 0.04 1.77 2.87 -10.66 -0.03 1.73 16 6 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 7 C -0.52 -27.08 7.51 25.60 0.19 -26.89 16 8 H 0.08 4.00 4.72 -2.91 -0.01 3.98 16 9 C 0.01 0.57 5.34 84.65 0.45 1.02 16 10 N -0.92 -53.28 12.63 21.45 0.27 -53.01 16 11 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 C 0.09 3.63 2.59 45.06 0.12 3.75 16 16 H 0.02 1.01 7.73 -2.39 -0.02 0.99 16 17 C -0.04 -1.40 3.54 29.85 0.11 -1.30 16 18 C -0.13 -3.90 3.96 -19.77 -0.08 -3.98 16 19 C -0.06 -1.68 7.28 22.47 0.16 -1.52 16 20 C -0.17 -3.44 10.10 22.36 0.23 -3.21 16 21 C 0.08 1.71 11.18 84.69 0.95 2.66 16 22 N -0.51 -14.80 10.36 -195.84 -2.03 -16.83 16 23 C 0.08 2.33 10.86 84.67 0.92 3.25 16 24 H 0.01 0.40 8.00 -2.39 -0.02 0.38 16 25 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.07 2.03 4.57 -2.39 -0.01 2.02 16 27 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.03 1.24 7.96 -2.39 -0.02 1.23 16 29 H 0.04 2.05 7.86 -2.39 -0.02 2.04 16 30 H 0.04 1.78 8.12 -2.38 -0.02 1.76 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.07 2.84 7.28 -2.39 -0.02 2.83 16 33 H 0.07 2.77 6.86 -2.38 -0.02 2.76 16 34 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -60.25 293.33 1.84 -58.41 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.05 Total: 13.57 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 4.90 Total: -24.68 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -6.13 Total: -92.31 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -60.25 1.84 -58.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.196 kcal (2) G-P(sol) polarization free energy of solvation -60.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds