Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 11 11 C 1.53000 * 109.46830 * 59.99971 * 9 7 2 12 12 N 1.46902 * 109.47071 * 185.00458 * 11 9 7 13 13 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 14 14 C 1.38097 * 120.33873 * 299.99675 * 13 9 7 15 15 N 1.31861 * 120.58691 * 179.97438 * 14 13 9 16 16 C 1.31693 * 121.64432 * 0.15832 * 15 14 13 17 17 C 1.38715 * 121.02188 * 359.91999 * 16 15 14 18 18 C 1.37890 * 118.93041 * 359.57960 * 17 16 15 19 19 C 1.50336 * 122.80307 * 180.25054 * 18 17 16 20 20 C 1.52834 * 110.52188 * 342.88693 * 19 18 17 21 21 C 1.53310 * 108.46580 * 50.64065 * 20 19 18 22 22 C 1.50460 * 118.54891 * 179.69411 * 17 16 15 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46739 * 304.99906 * 11 9 7 25 25 H 1.08993 * 109.47308 * 64.99717 * 11 9 7 26 26 H 1.00895 * 111.00120 * 179.97438 * 12 11 9 27 27 H 1.00901 * 110.99335 * 303.95087 * 12 11 9 28 28 H 1.08001 * 119.70266 * 0.02652 * 14 13 9 29 29 H 1.08002 * 119.48812 * 179.90335 * 16 15 14 30 30 H 1.08996 * 109.46595 * 222.43977 * 19 18 17 31 31 H 1.08996 * 109.07458 * 103.08238 * 19 18 17 32 32 H 1.09005 * 109.63399 * 290.94629 * 20 19 18 33 33 H 1.08996 * 109.63653 * 170.33523 * 20 19 18 34 34 H 1.08995 * 109.62385 * 170.48788 * 21 20 19 35 35 H 1.08996 * 109.78724 * 50.00372 * 21 20 19 36 36 H 1.09002 * 109.29953 * 282.70557 * 22 17 16 37 37 H 1.08998 * 109.30481 * 42.08786 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8746 -0.6844 -0.8877 11 6 4.0221 -0.4665 1.2505 12 7 5.4861 -0.3613 1.1906 13 6 4.0140 -2.6147 0.0124 14 6 3.6851 -3.4654 1.0494 15 7 4.1215 -4.7097 1.0606 16 6 4.8822 -5.1838 0.0957 17 6 5.2548 -4.3877 -0.9774 18 6 4.8083 -3.0841 -1.0277 19 6 5.1540 -2.1475 -2.1517 20 6 6.3499 -2.6776 -2.9421 21 6 6.0754 -4.1387 -3.3166 22 6 6.1310 -4.9843 -2.0452 23 1 -0.4850 0.8400 0.0004 24 1 3.5874 0.5323 1.2916 25 1 3.7340 -1.0250 2.1411 26 1 5.8478 0.1161 2.0025 27 1 5.9100 -1.2710 1.0869 28 1 3.0642 -3.1087 1.8579 29 1 5.2214 -6.2081 0.1409 30 1 5.3974 -1.1661 -1.7448 31 1 4.2949 -2.0560 -2.8161 32 1 7.2492 -2.6192 -2.3289 33 1 6.4816 -2.0858 -3.8479 34 1 6.8326 -4.4848 -4.0200 35 1 5.0880 -4.2241 -3.7702 36 1 7.1591 -5.0268 -1.6854 37 1 5.7889 -5.9947 -2.2692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = 15.163770 kcal Electronic energy + Delta-G solvation = -18366.959934 eV Core-core repulsion = 15721.937616 eV Total energy + Delta-G solvation = -2645.022318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.32774 -36.56052 -35.91639 -32.42642 -32.19599 -30.72600 -29.60425 -27.84080 -23.92106 -23.59326 -23.07019 -22.48871 -19.65836 -19.11746 -17.08867 -16.21717 -15.75203 -15.51809 -15.00981 -14.34138 -13.97490 -13.79106 -13.60141 -13.34797 -13.28141 -12.68014 -12.58056 -12.23744 -12.04705 -11.76553 -11.56021 -11.00431 -10.85563 -10.70929 -10.57100 -10.45581 -9.99258 -9.63723 -9.37290 -8.73141 -8.65271 -8.59684 -8.13445 -8.01283 -6.16419 -4.18424 1.71837 1.89930 3.21632 3.35359 3.41924 4.32465 4.36298 4.84719 4.90514 5.03392 5.03903 5.08636 5.30113 5.31522 5.41067 5.58308 5.66148 5.69002 5.76316 5.94169 5.95132 6.08553 6.12018 6.18239 6.19722 6.31737 6.43029 6.48800 6.52887 6.67410 6.78223 6.95247 7.34293 7.37219 7.54496 7.73062 7.92799 8.40335 8.59246 8.87418 9.42937 10.95603 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.008324 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.013908 B = 3362.887090 C = 3644.084685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.882 3.118 4 H -0.280 1.280 5 H -0.255 1.255 6 H -0.297 1.297 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.049 3.951 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.853 5.853 13 C -0.077 4.077 14 C 0.093 3.907 15 N -0.491 5.491 16 C 0.071 3.929 17 C -0.138 4.138 18 C -0.038 4.038 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.070 4.070 23 H 0.266 0.734 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.327 0.673 27 H 0.332 0.668 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.258 -5.563 -3.304 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.179 1.179 6 H -0.224 1.224 7 C -0.552 4.552 8 H 0.095 0.905 9 C 0.030 3.970 10 H 0.071 0.929 11 C -0.072 4.072 12 N -0.382 5.382 13 C -0.079 4.079 14 C -0.063 4.063 15 N -0.199 5.199 16 C -0.088 4.088 17 C -0.140 4.140 18 C -0.046 4.046 19 C -0.122 4.122 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.108 4.108 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.703 -5.564 -3.262 14.247 hybrid contribution 0.340 0.869 0.363 1.001 sum 13.044 -4.695 -2.898 14.163 Atomic orbital electron populations 1.69882 1.06280 1.27173 1.49716 1.25009 0.94737 0.98989 0.94180 0.86927 0.80444 0.83403 0.78069 1.20751 1.17925 1.22416 1.20890 0.87497 0.94779 1.52009 0.90529 1.18399 0.96563 0.87205 0.94857 0.92923 1.22423 0.85793 1.00093 0.98922 1.58902 1.07256 1.25270 1.46736 1.21152 0.94370 0.98945 0.93426 1.22585 0.97046 0.88283 0.98340 1.67563 1.10233 1.15312 1.26748 1.22495 0.96423 0.99318 0.90557 1.20373 1.01170 0.94496 0.97926 1.19716 0.95630 0.93414 0.95812 1.20507 0.98220 0.98339 0.95107 1.21563 0.98313 0.95799 0.99781 1.21549 1.01927 0.95500 0.96758 1.20293 0.98434 0.98663 0.93378 0.92433 0.91918 0.95568 0.86185 0.85603 0.83022 0.84109 0.89245 0.90198 0.91881 0.91680 0.91889 0.91622 0.91095 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.88 21.32 24.40 -169.99 -4.15 17.17 16 4 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 5 H -0.25 -5.98 6.54 56.52 0.37 -5.61 16 6 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.51 -13.85 8.83 -34.44 -0.30 -14.16 16 8 H 0.08 2.29 7.85 -52.49 -0.41 1.88 16 9 C 0.05 1.11 1.53 -92.92 -0.14 0.97 16 10 H 0.05 1.22 4.76 -51.93 -0.25 0.97 16 11 C 0.06 1.20 5.64 -3.82 -0.02 1.18 16 12 N -0.85 -14.90 9.62 -10.37 -0.10 -15.00 16 13 C -0.08 -1.56 3.78 -104.38 -0.39 -1.95 16 14 C 0.09 1.88 9.84 -17.59 -0.17 1.71 16 15 N -0.49 -9.40 10.36 -13.19 -0.14 -9.54 16 16 C 0.07 1.16 10.80 -17.43 -0.19 0.97 16 17 C -0.14 -2.17 5.73 -104.69 -0.60 -2.77 16 18 C -0.04 -0.68 5.74 -104.63 -0.60 -1.28 16 19 C -0.09 -1.36 4.71 -28.14 -0.13 -1.49 16 20 C -0.12 -1.45 5.98 -26.66 -0.16 -1.61 16 21 C -0.12 -1.37 5.96 -26.68 -0.16 -1.53 16 22 C -0.07 -0.83 5.71 -28.11 -0.16 -0.99 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.06 1.41 3.19 -51.92 -0.17 1.25 16 25 H 0.03 0.54 7.24 -51.93 -0.38 0.16 16 26 H 0.33 4.91 9.08 -39.29 -0.36 4.56 16 27 H 0.33 5.53 8.07 -39.29 -0.32 5.21 16 28 H 0.15 3.15 7.55 -52.49 -0.40 2.75 16 29 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.09 1.53 6.73 -51.93 -0.35 1.18 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -29.74 286.26 -7.61 -37.36 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.18 Total: 10.57 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -3.13 Total: -19.01 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.54 Total: -50.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.74 -7.61 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.519 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds