Wall clock time and date at job start Mon Mar 30 2020 03:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 11 11 C 1.53000 * 109.46830 * 59.99971 * 9 7 2 12 12 N 1.46902 * 109.47071 * 185.00458 * 11 9 7 13 13 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 14 14 C 1.38097 * 120.33873 * 299.99675 * 13 9 7 15 15 N 1.31861 * 120.58691 * 179.97438 * 14 13 9 16 16 C 1.31693 * 121.64432 * 0.15832 * 15 14 13 17 17 C 1.38715 * 121.02188 * 359.91999 * 16 15 14 18 18 C 1.37890 * 118.93041 * 359.57960 * 17 16 15 19 19 C 1.50336 * 122.80307 * 180.25054 * 18 17 16 20 20 C 1.52834 * 110.52188 * 342.88693 * 19 18 17 21 21 C 1.53310 * 108.46580 * 50.64065 * 20 19 18 22 22 C 1.50460 * 118.54891 * 179.69411 * 17 16 15 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46739 * 304.99906 * 11 9 7 25 25 H 1.08993 * 109.47308 * 64.99717 * 11 9 7 26 26 H 1.00895 * 111.00120 * 179.97438 * 12 11 9 27 27 H 1.00901 * 110.99335 * 303.95087 * 12 11 9 28 28 H 1.08001 * 119.70266 * 0.02652 * 14 13 9 29 29 H 1.08002 * 119.48812 * 179.90335 * 16 15 14 30 30 H 1.08996 * 109.46595 * 222.43977 * 19 18 17 31 31 H 1.08996 * 109.07458 * 103.08238 * 19 18 17 32 32 H 1.09005 * 109.63399 * 290.94629 * 20 19 18 33 33 H 1.08996 * 109.63653 * 170.33523 * 20 19 18 34 34 H 1.08995 * 109.62385 * 170.48788 * 21 20 19 35 35 H 1.08996 * 109.78724 * 50.00372 * 21 20 19 36 36 H 1.09002 * 109.29953 * 282.70557 * 22 17 16 37 37 H 1.08998 * 109.30481 * 42.08786 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8746 -0.6844 -0.8877 11 6 4.0221 -0.4665 1.2505 12 7 5.4861 -0.3613 1.1906 13 6 4.0140 -2.6147 0.0124 14 6 3.6851 -3.4654 1.0494 15 7 4.1215 -4.7097 1.0606 16 6 4.8822 -5.1838 0.0957 17 6 5.2548 -4.3877 -0.9774 18 6 4.8083 -3.0841 -1.0277 19 6 5.1540 -2.1475 -2.1517 20 6 6.3499 -2.6776 -2.9421 21 6 6.0754 -4.1387 -3.3166 22 6 6.1310 -4.9843 -2.0452 23 1 -0.4850 0.8400 0.0004 24 1 3.5874 0.5323 1.2916 25 1 3.7340 -1.0250 2.1411 26 1 5.8478 0.1161 2.0025 27 1 5.9100 -1.2710 1.0869 28 1 3.0642 -3.1087 1.8579 29 1 5.2214 -6.2081 0.1409 30 1 5.3974 -1.1661 -1.7448 31 1 4.2949 -2.0560 -2.8161 32 1 7.2492 -2.6192 -2.3289 33 1 6.4816 -2.0858 -3.8479 34 1 6.8326 -4.4848 -4.0200 35 1 5.0880 -4.2241 -3.7702 36 1 7.1591 -5.0268 -1.6854 37 1 5.7889 -5.9947 -2.2692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:29 Heat of formation + Delta-G solvation = -5.807689 kcal Electronic energy + Delta-G solvation = -18367.869325 eV Core-core repulsion = 15721.937616 eV Total energy + Delta-G solvation = -2645.931709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70624 -37.81973 -37.47994 -34.44726 -33.60558 -31.95120 -31.06102 -29.41435 -25.65382 -25.02247 -24.40749 -23.82718 -21.16537 -20.37320 -18.96910 -17.78437 -17.22891 -17.10596 -16.34156 -15.84341 -15.52347 -15.15905 -14.97166 -14.66655 -14.61042 -14.53651 -13.92902 -13.54115 -13.43945 -13.27716 -12.87776 -12.79463 -12.36753 -12.27363 -11.74235 -11.70534 -11.51176 -11.49245 -11.09272 -10.77266 -10.14710 -10.00430 -9.61396 -9.49705 -8.34195 -6.39832 0.31143 0.47284 1.27706 1.36183 1.48873 2.27995 2.90714 3.01756 3.61431 3.76223 3.78035 3.83988 4.05353 4.09717 4.14595 4.24042 4.39808 4.46228 4.51695 4.67916 4.70470 4.81218 4.94028 4.98062 5.04824 5.07688 5.08637 5.17322 5.30777 5.37273 5.51141 5.51545 5.55841 5.77628 5.95822 6.10614 6.31477 6.56943 6.70532 7.15049 7.25032 8.81951 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.008324 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.013908 B = 3362.887090 C = 3644.084685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.241 1.241 6 H -0.298 1.298 7 C -0.512 4.512 8 H 0.030 0.970 9 C 0.058 3.942 10 H 0.049 0.951 11 C 0.065 3.935 12 N -0.844 5.844 13 C -0.098 4.098 14 C 0.072 3.928 15 N -0.507 5.507 16 C 0.071 3.929 17 C -0.127 4.127 18 C -0.046 4.046 19 C -0.085 4.085 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.069 4.069 23 H 0.267 0.733 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.345 0.655 27 H 0.340 0.660 28 H 0.131 0.869 29 H 0.180 0.820 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.770 -6.299 -4.469 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.165 1.165 6 H -0.226 1.226 7 C -0.550 4.550 8 H 0.048 0.952 9 C 0.038 3.962 10 H 0.067 0.933 11 C -0.066 4.066 12 N -0.374 5.374 13 C -0.100 4.100 14 C -0.082 4.082 15 N -0.216 5.216 16 C -0.088 4.088 17 C -0.129 4.129 18 C -0.054 4.054 19 C -0.122 4.122 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.106 4.106 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.158 0.842 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.197 0.803 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.241 -6.304 -4.412 17.972 hybrid contribution -0.740 0.923 0.703 1.376 sum 15.501 -5.381 -3.708 16.823 Atomic orbital electron populations 1.70031 1.08167 1.28171 1.51959 1.25828 0.95395 1.02735 0.93981 0.85875 0.79417 0.78678 0.78648 1.19586 1.16461 1.22593 1.21096 0.90250 0.92888 1.50785 0.95159 1.18165 0.93336 0.89343 0.95374 0.93301 1.22112 0.87953 0.98727 0.97766 1.58758 1.04961 1.25933 1.47776 1.20979 0.96277 0.97836 0.94916 1.22313 0.98122 0.89306 0.98429 1.67547 1.11222 1.14553 1.28276 1.23192 0.94940 1.00919 0.89734 1.20845 1.00235 0.93317 0.98525 1.19996 0.95186 0.94840 0.95377 1.20512 0.99407 0.97635 0.94635 1.21561 0.96588 0.96759 0.99936 1.21575 1.02356 0.94568 0.97092 1.20445 0.98753 0.99347 0.92099 0.92355 0.93238 0.96098 0.84178 0.84774 0.85164 0.80336 0.90572 0.91858 0.90831 0.90113 0.88676 0.92885 0.88567 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 2 C 0.02 1.07 5.45 84.65 0.46 1.53 16 3 Si 0.95 44.87 24.40 68.60 1.67 46.54 16 4 H -0.27 -12.21 6.83 99.48 0.68 -11.53 16 5 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.51 -29.04 8.83 25.60 0.23 -28.81 16 8 H 0.03 1.94 7.85 -2.91 -0.02 1.92 16 9 C 0.06 2.64 1.53 -12.28 -0.02 2.62 16 10 H 0.05 2.28 4.76 -2.39 -0.01 2.27 16 11 C 0.06 2.71 5.64 86.30 0.49 3.19 16 12 N -0.84 -28.15 9.62 -186.71 -1.80 -29.95 16 13 C -0.10 -4.04 3.78 -19.71 -0.07 -4.12 16 14 C 0.07 3.05 9.84 84.65 0.83 3.88 16 15 N -0.51 -19.30 10.36 -195.64 -2.03 -21.33 16 16 C 0.07 2.16 10.80 84.83 0.92 3.07 16 17 C -0.13 -3.66 5.73 -19.91 -0.11 -3.78 16 18 C -0.05 -1.60 5.74 -19.87 -0.11 -1.71 16 19 C -0.09 -2.62 4.71 29.68 0.14 -2.48 16 20 C -0.11 -2.37 5.98 30.64 0.18 -2.19 16 21 C -0.12 -2.19 5.96 30.63 0.18 -2.01 16 22 C -0.07 -1.31 5.71 29.70 0.17 -1.14 16 23 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 24 H 0.05 2.20 3.19 -2.38 -0.01 2.19 16 25 H 0.02 0.88 7.24 -2.39 -0.02 0.86 16 26 H 0.35 9.61 9.08 -89.70 -0.81 8.79 16 27 H 0.34 10.77 8.07 -89.69 -0.72 10.04 16 28 H 0.13 5.84 7.55 -2.91 -0.02 5.82 16 29 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.08 2.52 6.73 -2.39 -0.02 2.51 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.44 8.13 -2.39 -0.02 1.42 16 Total: -1.00 -67.74 286.26 0.90 -66.84 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.53 Total: 28.33 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.28 Total: -31.92 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -3.52 Total: -109.79 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.54 kcal Total: -67.74 0.90 -66.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.035 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds