Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99560 * 2 1 4 4 H 1.48492 * 109.47376 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47333 * 239.99964 * 3 2 1 6 6 H 1.48503 * 109.46929 * 120.00290 * 3 2 1 7 7 C 1.37873 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00230 * 359.91627 * 7 2 1 10 10 H 1.09003 * 109.46664 * 26.46215 * 9 7 2 11 11 C 1.52997 * 109.47334 * 266.45672 * 9 7 2 12 12 N 1.46903 * 109.47035 * 65.26026 * 11 9 7 13 13 C 1.50701 * 109.47277 * 146.45559 * 9 7 2 14 14 C 1.38104 * 120.33564 * 59.72641 * 13 9 7 15 15 N 1.31862 * 120.58540 * 179.71530 * 14 13 9 16 16 C 1.31701 * 121.64457 * 0.66546 * 15 14 13 17 17 C 1.38715 * 121.01460 * 359.72915 * 16 15 14 18 18 C 1.37879 * 118.93685 * 359.78033 * 17 16 15 19 19 C 1.50345 * 122.80767 * 180.65133 * 18 17 16 20 20 C 1.52819 * 110.45645 * 342.40448 * 19 18 17 21 21 C 1.53310 * 108.49009 * 50.81927 * 20 19 18 22 22 C 1.50472 * 118.54223 * 179.67764 * 17 16 15 23 23 H 0.96999 * 119.99877 * 177.06040 * 1 2 3 24 24 H 1.09000 * 109.47308 * 185.25275 * 11 9 7 25 25 H 1.09001 * 109.47282 * 305.25925 * 11 9 7 26 26 H 1.00899 * 111.00082 * 63.70622 * 12 11 9 27 27 H 1.00897 * 111.00231 * 187.66235 * 12 11 9 28 28 H 1.08002 * 119.70727 * 359.97331 * 14 13 9 29 29 H 1.07994 * 119.48934 * 179.70214 * 16 15 14 30 30 H 1.09002 * 109.30624 * 102.70897 * 19 18 17 31 31 H 1.08994 * 109.30473 * 222.10691 * 19 18 17 32 32 H 1.09002 * 109.63280 * 291.11859 * 20 19 18 33 33 H 1.09005 * 109.63573 * 170.52158 * 20 19 18 34 34 H 1.08991 * 109.63299 * 170.48843 * 21 20 19 35 35 H 1.09008 * 109.78613 * 49.99760 * 21 20 19 36 36 H 1.08995 * 109.30595 * 282.54652 * 22 17 16 37 37 H 1.09001 * 109.30012 * 41.93765 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 0.0008 10 1 0.2722 -2.3539 -0.4560 11 6 1.0752 -2.9850 1.4408 12 7 0.2154 -2.0455 2.1730 13 6 2.0246 -3.5265 -0.7850 14 6 3.3040 -3.8789 -0.4027 15 7 3.9831 -4.7813 -1.0833 16 6 3.4786 -5.3658 -2.1502 17 6 2.2029 -5.0567 -2.5987 18 6 1.4597 -4.1248 -1.9056 19 6 0.0639 -3.7351 -2.3058 20 6 -0.2138 -4.1518 -3.7496 21 6 0.1638 -5.6290 -3.9105 22 6 1.6845 -5.7527 -3.8279 23 1 -0.4850 -0.8389 -0.0431 24 1 0.6137 -3.9725 1.4373 25 1 2.0492 -3.0408 1.9271 26 1 -0.7126 -2.0214 1.7778 27 1 0.1844 -2.2740 3.1553 28 1 3.7507 -3.4144 0.4640 29 1 4.0674 -6.0968 -2.6844 30 1 -0.6508 -4.2259 -1.6452 31 1 -0.0487 -2.6548 -2.2147 32 1 0.3856 -3.5446 -4.4279 33 1 -1.2725 -4.0181 -3.9723 34 1 -0.1811 -5.9918 -4.8786 35 1 -0.2951 -6.2159 -3.1148 36 1 2.1315 -5.3009 -4.7134 37 1 1.9587 -6.8069 -3.7876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = 9.249753 kcal Electronic energy + Delta-G solvation = -18279.997407 eV Core-core repulsion = 15634.718638 eV Total energy + Delta-G solvation = -2645.278769 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.23186 -36.49635 -35.75536 -32.33909 -31.88104 -30.68862 -29.42387 -26.93131 -23.84189 -23.71191 -22.94674 -22.03514 -19.92808 -19.23253 -16.78993 -16.26127 -15.74174 -15.07782 -14.76874 -13.92869 -13.82939 -13.63968 -13.58872 -13.34731 -13.05260 -12.68806 -12.24507 -12.12055 -11.83739 -11.68934 -11.37807 -10.95632 -10.72520 -10.71911 -10.58891 -10.21257 -10.06007 -9.69706 -8.85102 -8.62464 -8.45179 -8.24959 -7.95763 -7.49472 -6.23122 -3.89791 1.77887 1.95705 3.51159 3.53662 3.70281 4.40833 4.63861 4.86959 4.92357 5.03906 5.08077 5.33587 5.41392 5.47182 5.56843 5.61703 5.71516 5.75131 5.83485 5.94376 6.09684 6.11814 6.18418 6.21113 6.27768 6.37329 6.46630 6.49559 6.67083 6.73367 6.87769 7.03388 7.42481 7.47279 8.06085 8.30407 8.38740 8.54588 8.63714 8.98943 9.80244 11.17002 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.007887 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.330773 B = 3549.138548 C = 3748.882199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.041 3.959 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.578 4.578 8 H 0.045 0.955 9 C 0.061 3.939 10 H 0.053 0.947 11 C 0.080 3.920 12 N -0.818 5.818 13 C -0.074 4.074 14 C 0.088 3.912 15 N -0.490 5.490 16 C 0.064 3.936 17 C -0.135 4.135 18 C -0.049 4.049 19 C -0.081 4.081 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.071 4.071 23 H 0.266 0.734 24 H -0.017 1.017 25 H 0.054 0.946 26 H 0.332 0.668 27 H 0.317 0.683 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -10.025 -5.212 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.165 4.165 3 Si 0.894 3.106 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.616 4.616 8 H 0.063 0.937 9 C 0.041 3.959 10 H 0.071 0.929 11 C -0.051 4.051 12 N -0.346 5.346 13 C -0.076 4.076 14 C -0.067 4.067 15 N -0.199 5.199 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.057 4.057 19 C -0.118 4.118 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.108 4.108 23 H 0.079 0.921 24 H 0.001 0.999 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.128 0.872 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.251 -8.026 -5.118 9.522 hybrid contribution -0.990 -2.273 0.025 2.479 sum -0.739 -10.299 -5.093 11.513 Atomic orbital electron populations 1.70778 1.06754 1.30310 1.45231 1.25498 0.96461 1.01769 0.92816 0.83620 0.74952 0.75857 0.76215 1.21037 1.22001 1.21594 1.21544 0.93377 0.90287 1.56350 0.93688 1.18122 0.96393 0.91973 0.89410 0.92938 1.22046 0.95742 0.89530 0.97787 1.58367 1.15923 1.55912 1.04357 1.21486 0.95977 0.94850 0.95309 1.22493 0.91585 0.93677 0.98943 1.67520 1.36883 1.08586 1.06862 1.22433 0.92965 0.99649 0.94369 1.20361 0.95961 0.98972 0.98406 1.19713 0.96269 0.94876 0.94801 1.20447 0.92706 1.02774 0.95850 1.21559 1.01057 0.95958 0.96961 1.21538 0.95463 0.97112 1.01428 1.20305 0.95796 0.99475 0.95270 0.92146 0.99929 0.92707 0.85586 0.87215 0.83325 0.84193 0.91127 0.89206 0.91693 0.91658 0.91840 0.91907 0.90991 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 13.21 55.43 0.73 -24.46 16 2 C 0.04 1.12 5.27 -17.82 -0.09 1.03 16 3 Si 1.06 25.33 29.90 -169.99 -5.08 20.24 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.58 -15.48 7.87 -34.44 -0.27 -15.75 16 8 H 0.04 1.24 7.39 -52.48 -0.39 0.86 16 9 C 0.06 1.42 1.88 -92.92 -0.17 1.24 16 10 H 0.05 1.28 3.83 -51.93 -0.20 1.08 16 11 C 0.08 1.73 5.89 -3.82 -0.02 1.70 16 12 N -0.82 -17.21 8.44 -10.37 -0.09 -17.29 16 13 C -0.07 -1.59 4.79 -104.38 -0.50 -2.09 16 14 C 0.09 1.87 9.83 -17.59 -0.17 1.70 16 15 N -0.49 -9.83 10.36 -13.19 -0.14 -9.97 16 16 C 0.06 1.12 10.80 -17.43 -0.19 0.93 16 17 C -0.13 -2.29 5.73 -104.69 -0.60 -2.89 16 18 C -0.05 -0.94 5.74 -104.63 -0.60 -1.54 16 19 C -0.08 -1.40 4.71 -28.15 -0.13 -1.53 16 20 C -0.12 -1.63 5.98 -26.66 -0.16 -1.79 16 21 C -0.12 -1.42 5.97 -26.68 -0.16 -1.58 16 22 C -0.07 -0.91 5.71 -28.10 -0.16 -1.07 16 23 H 0.27 7.30 5.48 -40.82 -0.22 7.07 16 24 H -0.02 -0.35 8.14 -51.93 -0.42 -0.77 16 25 H 0.05 1.19 7.62 -51.93 -0.40 0.80 16 26 H 0.33 6.86 8.36 -39.29 -0.33 6.53 16 27 H 0.32 5.71 9.08 -39.29 -0.36 5.35 16 28 H 0.15 3.14 7.59 -52.49 -0.40 2.74 16 29 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.79 6.73 -51.93 -0.35 1.44 16 32 H 0.06 0.93 8.10 -51.93 -0.42 0.50 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.76 8.11 -51.92 -0.42 0.34 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -29.58 292.56 -8.64 -38.21 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.23 Total: 10.47 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.24 Total: -21.62 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.51 Total: -51.72 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.58 -8.64 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.463 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds