Wall clock time and date at job start Mon Mar 30 2020 03:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99560 * 2 1 4 4 H 1.48492 * 109.47376 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47333 * 239.99964 * 3 2 1 6 6 H 1.48503 * 109.46929 * 120.00290 * 3 2 1 7 7 C 1.37873 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00230 * 359.91627 * 7 2 1 10 10 H 1.09003 * 109.46664 * 26.46215 * 9 7 2 11 11 C 1.52997 * 109.47334 * 266.45672 * 9 7 2 12 12 N 1.46903 * 109.47035 * 65.26026 * 11 9 7 13 13 C 1.50701 * 109.47277 * 146.45559 * 9 7 2 14 14 C 1.38104 * 120.33564 * 59.72641 * 13 9 7 15 15 N 1.31862 * 120.58540 * 179.71530 * 14 13 9 16 16 C 1.31701 * 121.64457 * 0.66546 * 15 14 13 17 17 C 1.38715 * 121.01460 * 359.72915 * 16 15 14 18 18 C 1.37879 * 118.93685 * 359.78033 * 17 16 15 19 19 C 1.50345 * 122.80767 * 180.65133 * 18 17 16 20 20 C 1.52819 * 110.45645 * 342.40448 * 19 18 17 21 21 C 1.53310 * 108.49009 * 50.81927 * 20 19 18 22 22 C 1.50472 * 118.54223 * 179.67764 * 17 16 15 23 23 H 0.96999 * 119.99877 * 177.06040 * 1 2 3 24 24 H 1.09000 * 109.47308 * 185.25275 * 11 9 7 25 25 H 1.09001 * 109.47282 * 305.25925 * 11 9 7 26 26 H 1.00899 * 111.00082 * 63.70622 * 12 11 9 27 27 H 1.00897 * 111.00231 * 187.66235 * 12 11 9 28 28 H 1.08002 * 119.70727 * 359.97331 * 14 13 9 29 29 H 1.07994 * 119.48934 * 179.70214 * 16 15 14 30 30 H 1.09002 * 109.30624 * 102.70897 * 19 18 17 31 31 H 1.08994 * 109.30473 * 222.10691 * 19 18 17 32 32 H 1.09002 * 109.63280 * 291.11859 * 20 19 18 33 33 H 1.09005 * 109.63573 * 170.52158 * 20 19 18 34 34 H 1.08991 * 109.63299 * 170.48843 * 21 20 19 35 35 H 1.09008 * 109.78613 * 49.99760 * 21 20 19 36 36 H 1.08995 * 109.30595 * 282.54652 * 22 17 16 37 37 H 1.09001 * 109.30012 * 41.93765 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 0.0008 10 1 0.2722 -2.3539 -0.4560 11 6 1.0752 -2.9850 1.4408 12 7 0.2154 -2.0455 2.1730 13 6 2.0246 -3.5265 -0.7850 14 6 3.3040 -3.8789 -0.4027 15 7 3.9831 -4.7813 -1.0833 16 6 3.4786 -5.3658 -2.1502 17 6 2.2029 -5.0567 -2.5987 18 6 1.4597 -4.1248 -1.9056 19 6 0.0639 -3.7351 -2.3058 20 6 -0.2138 -4.1518 -3.7496 21 6 0.1638 -5.6290 -3.9105 22 6 1.6845 -5.7527 -3.8279 23 1 -0.4850 -0.8389 -0.0431 24 1 0.6137 -3.9725 1.4373 25 1 2.0492 -3.0408 1.9271 26 1 -0.7126 -2.0214 1.7778 27 1 0.1844 -2.2740 3.1553 28 1 3.7507 -3.4144 0.4640 29 1 4.0674 -6.0968 -2.6844 30 1 -0.6508 -4.2259 -1.6452 31 1 -0.0487 -2.6548 -2.2147 32 1 0.3856 -3.5446 -4.4279 33 1 -1.2725 -4.0181 -3.9723 34 1 -0.1811 -5.9918 -4.8786 35 1 -0.2951 -6.2159 -3.1148 36 1 2.1315 -5.3009 -4.7134 37 1 1.9587 -6.8069 -3.7876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:31 Heat of formation + Delta-G solvation = -9.244394 kcal Electronic energy + Delta-G solvation = -18280.799373 eV Core-core repulsion = 15634.718638 eV Total energy + Delta-G solvation = -2646.080736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.67647 -37.78834 -37.47682 -33.87567 -33.82366 -32.00103 -30.83158 -28.61079 -25.80958 -25.00446 -24.32400 -23.55453 -21.59242 -20.48684 -18.63828 -17.82821 -17.15776 -16.72436 -16.13056 -15.70348 -15.39237 -15.10531 -14.94818 -14.76250 -14.67896 -14.11074 -13.74264 -13.53368 -13.39141 -13.14599 -12.96842 -12.64576 -12.45547 -12.00925 -11.93933 -11.75523 -11.67493 -11.17142 -10.69139 -10.33276 -10.14822 -9.98433 -9.53770 -9.20319 -8.37067 -6.03259 0.30416 0.44580 1.56247 1.62991 1.80633 2.65360 2.92379 3.43280 3.59354 3.71706 3.78481 3.87780 3.99856 4.10335 4.10999 4.35169 4.39819 4.47113 4.54025 4.55968 4.71388 4.79944 4.90181 4.93644 5.00237 5.04594 5.09435 5.11862 5.26510 5.33496 5.42179 5.50415 5.72849 5.94552 6.19480 6.31379 6.58896 6.81077 6.88746 7.12930 7.71151 9.04093 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.007887 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.330773 B = 3549.138548 C = 3748.882199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 1.100 2.900 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.586 4.586 8 H 0.026 0.974 9 C 0.065 3.935 10 H 0.039 0.961 11 C 0.090 3.910 12 N -0.831 5.831 13 C -0.101 4.101 14 C 0.070 3.930 15 N -0.505 5.505 16 C 0.066 3.934 17 C -0.127 4.127 18 C -0.062 4.062 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.071 4.071 23 H 0.262 0.738 24 H -0.004 1.004 25 H 0.046 0.954 26 H 0.333 0.667 27 H 0.334 0.666 28 H 0.135 0.865 29 H 0.181 0.819 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -11.903 -7.026 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.203 4.203 3 Si 0.926 3.074 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.624 4.624 8 H 0.044 0.956 9 C 0.045 3.955 10 H 0.057 0.943 11 C -0.042 4.042 12 N -0.360 5.360 13 C -0.104 4.104 14 C -0.084 4.084 15 N -0.214 5.214 16 C -0.093 4.093 17 C -0.129 4.129 18 C -0.070 4.070 19 C -0.114 4.114 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.108 4.108 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.065 0.935 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.198 0.802 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.278 -9.914 -6.913 12.089 hybrid contribution -0.969 -1.793 0.548 2.111 sum -0.692 -11.707 -6.365 13.343 Atomic orbital electron populations 1.70841 1.07144 1.30142 1.46982 1.26487 0.96768 1.04397 0.92661 0.83125 0.74279 0.73271 0.76726 1.21011 1.21104 1.20863 1.21753 0.92657 0.92163 1.55853 0.95561 1.17979 0.95477 0.91461 0.90602 0.94278 1.21824 0.95549 0.90145 0.96640 1.58316 1.15957 1.56143 1.05593 1.21399 0.96324 0.95988 0.96674 1.22299 0.91796 0.94872 0.99416 1.67528 1.37170 1.08695 1.07983 1.23167 0.93546 0.99286 0.93313 1.20853 0.95337 0.97583 0.99127 1.20032 0.97335 0.95349 0.94260 1.20396 0.91956 1.00411 0.98654 1.21570 1.02163 0.97549 0.93927 1.21546 0.94897 0.95271 1.03282 1.20466 0.96326 1.00716 0.93278 0.92653 0.98594 0.93527 0.85456 0.85332 0.84754 0.80196 0.90812 0.92934 0.92227 0.89956 0.88567 0.91875 0.89428 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.63 13.21 21.45 0.28 -52.35 16 2 C 0.00 -0.07 5.27 84.65 0.45 0.38 16 3 Si 1.10 51.90 29.90 68.60 2.05 53.95 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.59 -32.48 7.87 25.60 0.20 -32.28 16 8 H 0.03 1.51 7.39 -2.91 -0.02 1.49 16 9 C 0.06 3.12 1.88 -12.29 -0.02 3.10 16 10 H 0.04 1.99 3.83 -2.39 -0.01 1.98 16 11 C 0.09 3.96 5.89 86.30 0.51 4.47 16 12 N -0.83 -35.54 8.44 -186.72 -1.58 -37.11 16 13 C -0.10 -4.47 4.79 -19.71 -0.09 -4.56 16 14 C 0.07 3.06 9.83 84.66 0.83 3.89 16 15 N -0.51 -19.91 10.36 -195.64 -2.03 -21.93 16 16 C 0.07 2.12 10.80 84.83 0.92 3.03 16 17 C -0.13 -3.98 5.73 -19.91 -0.11 -4.09 16 18 C -0.06 -2.35 5.74 -19.87 -0.11 -2.46 16 19 C -0.08 -2.65 4.71 29.68 0.14 -2.51 16 20 C -0.11 -2.91 5.98 30.64 0.18 -2.72 16 21 C -0.11 -2.22 5.97 30.63 0.18 -2.04 16 22 C -0.07 -1.48 5.71 29.71 0.17 -1.31 16 23 H 0.26 14.83 5.48 -92.71 -0.51 14.32 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.05 2.10 7.62 -2.39 -0.02 2.08 16 26 H 0.33 14.07 8.36 -89.69 -0.75 13.32 16 27 H 0.33 12.06 9.08 -89.70 -0.81 11.25 16 28 H 0.13 6.01 7.59 -2.91 -0.02 5.99 16 29 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 2.18 6.73 -2.39 -0.02 2.17 16 32 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 1.59 8.13 -2.39 -0.02 1.57 16 Total: -1.00 -65.09 292.56 1.75 -63.34 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.22 Total: 31.21 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.23 Total: -37.11 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.32 Total: -111.39 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -65.09 1.75 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.096 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds