Wall clock time and date at job start Mon Mar 30 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00209 * 2 1 4 4 H 1.48502 * 109.47096 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.46797 * 29.99882 * 3 2 1 6 6 H 1.48498 * 109.47306 * 149.99718 * 3 2 1 7 7 C 1.37882 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00258 * 171.52870 * 7 2 1 9 9 C 1.50702 * 119.99620 * 351.52160 * 7 2 1 10 10 C 1.53002 * 113.38479 * 307.50053 * 9 7 2 11 11 N 1.46898 * 109.47069 * 291.52325 * 10 9 7 12 12 C 1.53515 * 114.16766 * 174.42004 * 9 7 2 13 13 N 1.47481 * 87.92902 * 220.32812 * 12 9 7 14 14 C 1.46903 * 110.99754 * 138.70329 * 13 12 9 15 15 C 1.50706 * 109.47277 * 170.00195 * 14 13 12 16 16 C 1.38228 * 119.99812 * 269.86816 * 15 14 13 17 17 C 1.38237 * 120.00148 * 180.02562 * 16 15 14 18 18 C 1.38230 * 119.99527 * 0.06032 * 17 16 15 19 19 C 1.38234 * 120.00314 * 0.02562 * 18 17 16 20 20 C 1.38232 * 120.00034 * 359.96993 * 19 18 17 21 21 C 1.47484 * 87.83695 * 27.01219 * 13 12 9 22 22 H 0.97000 * 120.00211 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47269 * 51.52291 * 10 9 7 24 24 H 1.09003 * 109.46820 * 171.52565 * 10 9 7 25 25 H 1.00898 * 111.00269 * 173.83087 * 11 10 9 26 26 H 1.00900 * 111.00563 * 297.78246 * 11 10 9 27 27 H 1.09002 * 113.47646 * 105.56962 * 12 9 7 28 28 H 1.08997 * 113.47860 * 335.09292 * 12 9 7 29 29 H 1.09004 * 109.47055 * 50.00074 * 14 13 12 30 30 H 1.09006 * 109.47450 * 290.00063 * 14 13 12 31 31 H 1.08004 * 120.00244 * 0.10302 * 16 15 14 32 32 H 1.07995 * 120.00193 * 180.34690 * 17 16 15 33 33 H 1.08007 * 119.99540 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.00030 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.00038 * 179.97438 * 20 19 18 36 36 H 1.08998 * 113.47288 * 87.75483 * 21 13 12 37 37 H 1.08995 * 113.47258 * 218.21932 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1992 -0.1372 9 6 1.2634 -2.4919 0.1935 10 6 0.3706 -2.5025 1.4361 11 7 1.2095 -2.4863 2.6419 12 6 2.1375 -3.7442 0.0369 13 7 1.0133 -4.3738 -0.6806 14 6 1.4907 -5.1342 -1.8433 15 6 0.3597 -5.9574 -2.4041 16 6 0.1471 -7.2436 -1.9446 17 6 -0.8900 -7.9989 -2.4593 18 6 -1.7136 -7.4682 -3.4344 19 6 -1.4999 -6.1826 -3.8952 20 6 -0.4629 -5.4273 -3.3804 21 6 0.5804 -3.0204 -1.0756 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2724 -1.6224 1.4290 24 1 -0.2448 -3.4022 1.4336 25 1 0.6458 -2.3916 3.4733 26 1 1.7893 -3.3107 2.6902 27 1 2.3745 -4.2295 0.9837 28 1 3.0165 -3.5849 -0.5876 29 1 2.3031 -5.7935 -1.5376 30 1 1.8505 -4.4438 -2.6062 31 1 0.7904 -7.6581 -1.1825 32 1 -1.0596 -9.0018 -2.0964 33 1 -2.5237 -8.0585 -3.8369 34 1 -2.1432 -5.7682 -4.6574 35 1 -0.2957 -4.4231 -3.7407 36 1 1.0439 -2.6680 -1.9971 37 1 -0.5020 -2.8924 -1.0717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260546897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:41 Heat of formation + Delta-G solvation = 64.514851 kcal Electronic energy + Delta-G solvation = -17736.197144 eV Core-core repulsion = 15093.314850 eV Total energy + Delta-G solvation = -2642.882295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64471 -38.51829 -33.97377 -31.98003 -31.79305 -30.68528 -28.33601 -25.52442 -24.89685 -23.70785 -22.33843 -22.00343 -20.54707 -17.88893 -16.72352 -16.19374 -15.18934 -15.07712 -14.93556 -14.67687 -14.06471 -13.83313 -13.39829 -13.20023 -12.94213 -12.48135 -12.32505 -11.99340 -11.66021 -11.58109 -10.95194 -10.86775 -10.82124 -10.59421 -10.37369 -10.13119 -9.55133 -9.25175 -8.91481 -8.71369 -8.45960 -8.27745 -7.96071 -7.40340 -5.94322 -3.96100 1.57587 1.61064 3.35114 3.42783 3.48356 3.98210 4.49849 4.96413 5.02355 5.13316 5.23388 5.29655 5.37222 5.52262 5.70273 5.73193 5.83252 5.89075 6.10643 6.22690 6.25204 6.30253 6.47401 6.56105 6.65759 6.67984 6.68621 6.81817 6.87872 7.13162 7.17720 7.22558 7.34857 7.72235 8.02475 8.06329 8.29580 8.47311 8.60063 8.98540 9.66714 11.11909 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.005694 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.715048 B = 4916.393130 C = 5262.610120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.486 4.486 8 H 0.054 0.946 9 C 0.077 3.923 10 C 0.092 3.908 11 N -0.834 5.834 12 C -0.001 4.001 13 N -0.478 5.478 14 C 0.054 3.946 15 C -0.057 4.057 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.110 4.110 21 C 0.017 3.983 22 H 0.258 0.742 23 H 0.101 0.899 24 H -0.005 1.005 25 H 0.319 0.681 26 H 0.319 0.681 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -11.855 -4.131 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.038 4.038 11 N -0.361 5.361 12 C -0.130 4.130 13 N -0.201 5.201 14 C -0.075 4.075 15 C -0.058 4.058 16 C -0.125 4.125 17 C -0.143 4.143 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.129 4.129 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.013 0.987 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.520 -11.536 -4.124 12.345 hybrid contribution 0.442 0.468 -0.315 0.717 sum -1.078 -11.068 -4.439 11.974 Atomic orbital electron populations 1.69869 1.05891 1.26305 1.50512 1.24842 0.94683 0.98711 0.94588 0.86669 0.80206 0.83817 0.77636 1.21186 1.21350 1.19923 1.20733 0.93253 0.89926 1.48486 0.92749 1.19261 0.91413 0.91325 0.90472 1.21534 0.94152 0.99344 0.88785 1.58572 1.27483 1.45777 1.04230 1.24001 0.94038 0.97436 0.97513 1.68950 1.21978 1.13401 1.15733 1.21649 0.94181 0.97105 0.94538 1.19843 0.96872 0.94056 0.94984 1.20994 0.98122 0.94140 0.99287 1.21070 0.95932 0.99691 0.97622 1.21047 0.99725 0.95910 0.98287 1.21089 0.97973 0.94626 1.00299 1.21103 0.95220 0.99576 0.96966 1.24053 1.00678 0.86288 1.00224 0.93167 0.88092 0.98739 0.87043 0.86961 0.92201 0.92737 0.91239 0.93256 0.86410 0.86556 0.86647 0.86440 0.86257 0.92680 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 11.37 55.43 0.63 -23.88 16 2 C 0.07 1.97 5.24 -17.82 -0.09 1.88 16 3 Si 0.89 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -12.89 8.38 -34.44 -0.29 -13.18 16 8 H 0.05 1.46 7.83 -52.48 -0.41 1.05 16 9 C 0.08 1.82 0.63 -155.13 -0.10 1.72 16 10 C 0.09 2.15 5.98 -3.82 -0.02 2.13 16 11 N -0.83 -17.30 9.49 -10.37 -0.10 -17.40 16 12 C 0.00 -0.02 6.72 -7.54 -0.05 -0.07 16 13 N -0.48 -9.53 6.10 -246.02 -1.50 -11.03 16 14 C 0.05 0.91 4.94 -4.97 -0.02 0.89 16 15 C -0.06 -0.91 5.46 -104.62 -0.57 -1.49 16 16 C -0.11 -1.55 9.70 -39.59 -0.38 -1.93 16 17 C -0.13 -1.61 10.05 -39.58 -0.40 -2.00 16 18 C -0.13 -1.65 10.05 -39.59 -0.40 -2.05 16 19 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 20 C -0.11 -1.70 9.70 -39.59 -0.38 -2.08 16 21 C 0.02 0.38 6.84 -7.54 -0.05 0.33 16 22 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.10 2.67 6.02 -51.93 -0.31 2.36 16 24 H -0.01 -0.13 7.93 -51.93 -0.41 -0.54 16 25 H 0.32 5.83 9.08 -39.29 -0.36 5.48 16 26 H 0.32 6.03 7.69 -39.29 -0.30 5.73 16 27 H 0.06 1.18 6.88 -51.93 -0.36 0.82 16 28 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 29 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 30 H 0.05 0.85 7.25 -51.93 -0.38 0.47 16 31 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 37 H 0.06 1.57 8.12 -51.93 -0.42 1.15 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -28.18 304.21 -9.97 -38.15 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.41 Total: 11.22 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -3.16 Total: -17.89 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.97 Total: -52.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.18 -9.97 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.666 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds