Wall clock time and date at job start Mon Mar 30 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00209 * 2 1 4 4 H 1.48502 * 109.47096 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.46797 * 29.99882 * 3 2 1 6 6 H 1.48498 * 109.47306 * 149.99718 * 3 2 1 7 7 C 1.37882 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00258 * 171.52870 * 7 2 1 9 9 C 1.50702 * 119.99620 * 351.52160 * 7 2 1 10 10 C 1.53002 * 113.38479 * 307.50053 * 9 7 2 11 11 N 1.46898 * 109.47069 * 291.52325 * 10 9 7 12 12 C 1.53515 * 114.16766 * 174.42004 * 9 7 2 13 13 N 1.47481 * 87.92902 * 220.32812 * 12 9 7 14 14 C 1.46903 * 110.99754 * 138.70329 * 13 12 9 15 15 C 1.50706 * 109.47277 * 170.00195 * 14 13 12 16 16 C 1.38228 * 119.99812 * 269.86816 * 15 14 13 17 17 C 1.38237 * 120.00148 * 180.02562 * 16 15 14 18 18 C 1.38230 * 119.99527 * 0.06032 * 17 16 15 19 19 C 1.38234 * 120.00314 * 0.02562 * 18 17 16 20 20 C 1.38232 * 120.00034 * 359.96993 * 19 18 17 21 21 C 1.47484 * 87.83695 * 27.01219 * 13 12 9 22 22 H 0.97000 * 120.00211 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47269 * 51.52291 * 10 9 7 24 24 H 1.09003 * 109.46820 * 171.52565 * 10 9 7 25 25 H 1.00898 * 111.00269 * 173.83087 * 11 10 9 26 26 H 1.00900 * 111.00563 * 297.78246 * 11 10 9 27 27 H 1.09002 * 113.47646 * 105.56962 * 12 9 7 28 28 H 1.08997 * 113.47860 * 335.09292 * 12 9 7 29 29 H 1.09004 * 109.47055 * 50.00074 * 14 13 12 30 30 H 1.09006 * 109.47450 * 290.00063 * 14 13 12 31 31 H 1.08004 * 120.00244 * 0.10302 * 16 15 14 32 32 H 1.07995 * 120.00193 * 180.34690 * 17 16 15 33 33 H 1.08007 * 119.99540 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.00030 * 179.97438 * 19 18 17 35 35 H 1.07992 * 120.00038 * 179.97438 * 20 19 18 36 36 H 1.08998 * 113.47288 * 87.75483 * 21 13 12 37 37 H 1.08995 * 113.47258 * 218.21932 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1992 -0.1372 9 6 1.2634 -2.4919 0.1935 10 6 0.3706 -2.5025 1.4361 11 7 1.2095 -2.4863 2.6419 12 6 2.1375 -3.7442 0.0369 13 7 1.0133 -4.3738 -0.6806 14 6 1.4907 -5.1342 -1.8433 15 6 0.3597 -5.9574 -2.4041 16 6 0.1471 -7.2436 -1.9446 17 6 -0.8900 -7.9989 -2.4593 18 6 -1.7136 -7.4682 -3.4344 19 6 -1.4999 -6.1826 -3.8952 20 6 -0.4629 -5.4273 -3.3804 21 6 0.5804 -3.0204 -1.0756 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2724 -1.6224 1.4290 24 1 -0.2448 -3.4022 1.4336 25 1 0.6458 -2.3916 3.4733 26 1 1.7893 -3.3107 2.6902 27 1 2.3745 -4.2295 0.9837 28 1 3.0165 -3.5849 -0.5876 29 1 2.3031 -5.7935 -1.5376 30 1 1.8505 -4.4438 -2.6062 31 1 0.7904 -7.6581 -1.1825 32 1 -1.0596 -9.0018 -2.0964 33 1 -2.5237 -8.0585 -3.8369 34 1 -2.1432 -5.7682 -4.6574 35 1 -0.2957 -4.4231 -3.7407 36 1 1.0439 -2.6680 -1.9971 37 1 -0.5020 -2.8924 -1.0717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260546897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:40 Heat of formation + Delta-G solvation = 45.430962 kcal Electronic energy + Delta-G solvation = -17737.024684 eV Core-core repulsion = 15093.314850 eV Total energy + Delta-G solvation = -2643.709834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20832 -39.74720 -35.67050 -33.93656 -33.13597 -31.73635 -29.91497 -27.24723 -26.62856 -25.48471 -23.63146 -23.35318 -21.82618 -19.77118 -18.28036 -17.55796 -16.85023 -16.71286 -16.30642 -16.09187 -15.81863 -15.39194 -14.78425 -14.63251 -14.25270 -14.01431 -13.79013 -13.41650 -13.34612 -13.26094 -12.81778 -12.51266 -12.28652 -12.16712 -11.98312 -11.69310 -11.30343 -11.08907 -10.77674 -10.27911 -9.78598 -9.71733 -9.53506 -9.12969 -7.98694 -6.05789 0.48797 0.54676 1.43814 1.47871 1.56715 2.50943 2.87683 3.27300 3.48404 3.83288 3.96504 4.02871 4.19805 4.27554 4.31172 4.36358 4.50899 4.59495 4.67334 4.75425 4.79217 4.81927 4.93601 4.97994 5.14765 5.19057 5.25670 5.41686 5.52523 5.62428 5.64424 5.72071 5.81480 6.08288 6.16638 6.37454 6.41742 6.69374 6.93339 6.99230 7.58821 9.05522 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.005694 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.715048 B = 4916.393130 C = 5262.610120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.046 0.954 9 C 0.059 3.941 10 C 0.105 3.895 11 N -0.838 5.838 12 C 0.010 3.990 13 N -0.472 5.472 14 C 0.056 3.944 15 C -0.080 4.080 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.132 4.132 21 C 0.028 3.972 22 H 0.257 0.743 23 H 0.069 0.931 24 H -0.006 1.006 25 H 0.334 0.666 26 H 0.333 0.667 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -13.572 -4.132 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.057 3.943 10 C -0.026 4.026 11 N -0.367 5.367 12 C -0.119 4.119 13 N -0.194 5.194 14 C -0.072 4.072 15 C -0.081 4.081 16 C -0.135 4.135 17 C -0.142 4.142 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.102 4.102 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.012 0.988 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.450 -13.265 -4.118 13.965 hybrid contribution 0.395 0.926 -0.342 1.064 sum -1.055 -12.339 -4.460 13.163 Atomic orbital electron populations 1.69990 1.06837 1.26620 1.51368 1.25437 0.95337 1.01307 0.94708 0.85834 0.79007 0.80697 0.77600 1.20775 1.21398 1.19858 1.20981 0.93016 0.91388 1.48134 0.93587 1.19363 0.92368 0.91580 0.90953 1.21218 0.93925 0.97700 0.89753 1.58458 1.27565 1.46656 1.04031 1.23853 0.93726 0.96004 0.98313 1.68872 1.21767 1.11887 1.16894 1.21644 0.95364 0.96969 0.93201 1.19825 0.97204 0.94950 0.96112 1.21202 0.98996 0.93663 0.99660 1.21457 0.94917 1.00794 0.97054 1.21468 1.00091 0.95539 0.97551 1.21378 0.97495 0.95149 1.00584 1.21183 0.96464 0.99611 0.97815 1.23765 0.98850 0.88210 0.99354 0.93418 0.91285 0.98793 0.85404 0.85486 0.90696 0.92686 0.89488 0.94030 0.85376 0.83566 0.83489 0.84529 0.87476 0.93932 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 11.37 21.45 0.24 -50.89 16 2 C 0.03 1.70 5.24 84.66 0.44 2.14 16 3 Si 0.94 43.89 29.55 68.60 2.03 45.92 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.50 -26.56 8.38 25.60 0.21 -26.35 16 8 H 0.05 2.48 7.83 -2.91 -0.02 2.46 16 9 C 0.06 2.80 0.63 -52.58 -0.03 2.77 16 10 C 0.10 4.92 5.98 86.30 0.52 5.44 16 11 N -0.84 -33.97 9.49 -186.72 -1.77 -35.74 16 12 C 0.01 0.40 6.72 83.58 0.56 0.96 16 13 N -0.47 -18.68 6.10 -932.27 -5.68 -24.36 16 14 C 0.06 1.89 4.94 85.56 0.42 2.32 16 15 C -0.08 -2.52 5.46 -19.87 -0.11 -2.63 16 16 C -0.12 -3.15 9.70 22.27 0.22 -2.93 16 17 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 18 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 19 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 20 C -0.13 -4.06 9.70 22.27 0.22 -3.85 16 21 C 0.03 1.30 6.84 83.58 0.57 1.87 16 22 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 23 H 0.07 3.72 6.02 -2.39 -0.01 3.70 16 24 H -0.01 -0.28 7.93 -2.39 -0.02 -0.30 16 25 H 0.33 11.83 9.08 -89.70 -0.81 11.01 16 26 H 0.33 12.01 7.69 -89.69 -0.69 11.32 16 27 H 0.07 2.81 6.88 -2.39 -0.02 2.79 16 28 H 0.05 2.22 7.87 -2.39 -0.02 2.20 16 29 H 0.09 2.59 8.02 -2.38 -0.02 2.57 16 30 H 0.04 1.45 7.25 -2.38 -0.02 1.43 16 31 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 37 H 0.04 2.07 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -60.00 304.21 -1.93 -61.93 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.44 Total: 31.64 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.69 Total: -28.49 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -7.21 Total: -111.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -60.00 -1.93 -61.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.364 kcal (2) G-P(sol) polarization free energy of solvation -60.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds