Wall clock time and date at job start Mon Mar 30 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.62525 * 300.70197 * 9 7 2 11 11 C 1.55139 * 110.70812 * 63.80523 * 9 7 2 12 12 C 1.55111 * 101.55943 * 153.90790 * 11 9 7 13 13 N 1.47847 * 104.90572 * 323.15922 * 12 11 9 14 14 C 1.46894 * 110.99783 * 146.24083 * 13 12 11 15 15 C 1.53005 * 109.47336 * 69.16135 * 14 13 12 16 16 C 1.50694 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.38226 * 119.61975 * 124.99752 * 16 15 14 18 18 C 1.38623 * 119.16359 * 179.97438 * 17 16 15 19 19 C 1.38674 * 118.41961 * 0.02562 * 18 17 16 20 20 C 1.38177 * 119.16609 * 359.97438 * 19 18 17 21 21 N 1.31852 * 119.61921 * 304.72074 * 16 15 14 22 22 C 1.47442 * 108.56710 * 23.97420 * 13 12 11 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.99366 * 272.13220 * 11 9 7 25 25 H 1.09000 * 110.98882 * 35.94329 * 11 9 7 26 26 H 1.09004 * 110.42391 * 204.24591 * 12 11 9 27 27 H 1.08997 * 110.31132 * 82.02203 * 12 11 9 28 28 H 1.09001 * 109.47237 * 189.15740 * 14 13 12 29 29 H 1.08995 * 109.47536 * 309.15938 * 14 13 12 30 30 H 1.09001 * 109.46635 * 299.99974 * 15 14 13 31 31 H 1.09000 * 109.47389 * 59.99344 * 15 14 13 32 32 H 1.08007 * 120.41950 * 0.02562 * 17 16 15 33 33 H 1.08000 * 120.79273 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.41604 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.62476 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.88681 * 239.60463 * 22 13 12 37 37 H 1.08994 * 110.02462 * 118.49220 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6084 -2.5715 0.8769 11 6 0.4216 -2.6537 -1.3024 12 6 0.3210 -4.1966 -1.4256 13 7 1.6282 -4.7017 -0.9544 14 6 1.4775 -5.9906 -0.2660 15 6 1.0915 -7.0687 -1.2808 16 6 0.9374 -8.3910 -0.5746 17 6 -0.2443 -9.0976 -0.6976 18 6 -0.3756 -10.3132 -0.0444 19 6 0.6912 -10.7747 0.7119 20 6 1.8417 -10.0132 0.7884 21 7 1.9333 -8.8634 0.1489 22 6 2.2273 -3.6928 -0.0616 23 1 -0.4850 -0.8401 0.0004 24 1 -0.5647 -2.2028 -1.1928 25 1 0.9508 -2.2287 -2.1553 26 1 0.1544 -4.4853 -2.4634 27 1 -0.4822 -4.5751 -0.7935 28 1 2.4200 -6.2607 0.2101 29 1 0.6981 -5.9090 0.4915 30 1 0.1489 -6.7986 -1.7569 31 1 1.8709 -7.1504 -2.0384 32 1 -1.0548 -8.7078 -1.2957 33 1 -1.2870 -10.8873 -0.1227 34 1 0.6240 -11.7177 1.2339 35 1 2.6772 -10.3657 1.3750 36 1 3.1872 -3.3666 -0.4620 37 1 2.3645 -4.1111 0.9354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260613876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:31 Heat of formation + Delta-G solvation = 26.397286 kcal Electronic energy + Delta-G solvation = -17168.771593 eV Core-core repulsion = 14524.236397 eV Total energy + Delta-G solvation = -2644.535196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32801 -38.24098 -34.42555 -32.84945 -32.41444 -30.39759 -28.34565 -27.68989 -24.18483 -23.77692 -23.21337 -21.45005 -19.87147 -19.75121 -17.01063 -16.87518 -16.36915 -15.67587 -15.27494 -14.54236 -14.27614 -13.89847 -13.72744 -13.43881 -12.93947 -12.63633 -12.44895 -12.35039 -11.81299 -11.68046 -11.14405 -10.92236 -10.72321 -10.65091 -10.36059 -10.09168 -10.01592 -9.74088 -9.59784 -9.45467 -9.07094 -8.46146 -8.31714 -7.66680 -6.30792 -4.02640 0.96251 1.12846 3.46347 3.49729 3.63652 3.65466 4.17041 4.43471 4.56035 4.66079 4.84509 4.90482 4.97318 5.28516 5.40289 5.40801 5.48557 5.57030 5.72529 5.78906 5.89547 5.98352 6.01321 6.10245 6.18008 6.28517 6.33014 6.42337 6.58181 6.75113 6.96742 7.00330 7.27994 7.45627 7.74080 7.80608 7.90149 8.26671 8.47680 8.91566 9.69068 11.07014 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.057510 B = 0.003927 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.757287 B = 7128.172902 C = 7338.979829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.019 3.981 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.589 4.589 8 H 0.052 0.948 9 C 0.017 3.983 10 H 0.018 0.982 11 C -0.119 4.119 12 C 0.038 3.962 13 N -0.533 5.533 14 C 0.064 3.936 15 C -0.066 4.066 16 C 0.140 3.860 17 C -0.173 4.173 18 C -0.075 4.075 19 C -0.186 4.186 20 C 0.102 3.898 21 N -0.480 5.480 22 C 0.057 3.943 23 H 0.271 0.729 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -19.535 -0.815 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.185 4.185 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.627 4.627 8 H 0.070 0.930 9 C -0.002 4.002 10 H 0.036 0.964 11 C -0.158 4.158 12 C -0.089 4.089 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.104 4.104 16 C 0.002 3.998 17 C -0.192 4.192 18 C -0.101 4.101 19 C -0.206 4.206 20 C -0.056 4.056 21 N -0.189 5.189 22 C -0.070 4.070 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.090 0.910 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.039 -17.494 -1.175 17.533 hybrid contribution -1.237 -2.236 0.725 2.657 sum -1.198 -19.730 -0.450 19.772 Atomic orbital electron populations 1.70748 1.06879 1.30942 1.46673 1.25795 0.96562 1.02562 0.93616 0.83486 0.74544 0.74908 0.76868 1.21507 1.21472 1.21398 1.21967 0.94100 0.91116 1.55539 0.93005 1.19988 0.93382 0.93999 0.92859 0.96350 1.22904 1.00484 0.91444 1.00932 1.23149 0.89565 0.97408 0.98824 1.63590 1.22181 1.02520 1.37385 1.22119 1.00754 0.89545 0.94128 1.20559 1.03111 0.88782 0.97958 1.21414 0.89091 0.96061 0.93213 1.22040 0.99117 0.96176 1.01908 1.21576 0.98618 0.95330 0.94545 1.22109 0.95128 1.01787 1.01573 1.22789 0.97006 0.90071 0.95691 1.67529 1.30766 1.13341 1.07273 1.22848 0.99534 0.91663 0.92995 0.91688 0.92100 0.91690 0.91796 0.95005 0.90308 0.95633 0.90450 0.89120 0.84800 0.84988 0.85017 0.82839 0.90980 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 13.45 55.43 0.75 -26.77 16 2 C 0.02 0.53 5.35 -17.82 -0.10 0.44 16 3 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.59 -16.67 8.48 -34.44 -0.29 -16.96 16 8 H 0.05 1.47 7.55 -52.49 -0.40 1.07 16 9 C 0.02 0.43 2.45 -89.95 -0.22 0.21 16 10 H 0.02 0.50 8.00 -51.93 -0.42 0.09 16 11 C -0.12 -2.78 5.78 -24.48 -0.14 -2.92 16 12 C 0.04 0.74 5.79 -2.19 -0.01 0.72 16 13 N -0.53 -10.39 5.16 -231.12 -1.19 -11.58 16 14 C 0.06 1.07 4.43 -3.82 -0.02 1.05 16 15 C -0.07 -0.91 5.66 -27.88 -0.16 -1.07 16 16 C 0.14 1.84 6.17 -82.59 -0.51 1.33 16 17 C -0.17 -1.86 9.71 -39.44 -0.38 -2.25 16 18 C -0.07 -0.68 10.18 -39.28 -0.40 -1.08 16 19 C -0.19 -1.66 10.11 -39.44 -0.40 -2.06 16 20 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 21 N -0.48 -6.58 9.89 -9.48 -0.09 -6.67 16 22 C 0.06 1.26 6.45 -2.84 -0.02 1.24 16 23 H 0.27 8.05 5.44 -40.82 -0.22 7.83 16 24 H 0.06 1.47 6.60 -51.93 -0.34 1.13 16 25 H 0.06 1.60 8.04 -51.93 -0.42 1.18 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.59 7.62 -51.93 -0.40 0.19 16 28 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 29 H 0.03 0.45 7.85 -51.93 -0.41 0.04 16 30 H 0.08 0.98 7.22 -51.93 -0.38 0.61 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.13 1.19 7.95 -52.48 -0.42 0.78 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.07 1.66 7.64 -51.93 -0.40 1.27 16 37 H 0.03 0.72 7.56 -51.93 -0.39 0.33 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -31.30 301.23 -9.42 -40.73 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.50 Total: -0.17 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.84 Total: -20.44 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.54 Total: -45.02 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.30 -9.42 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.124 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds