Wall clock time and date at job start Mon Mar 30 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.62525 * 300.70197 * 9 7 2 11 11 C 1.55139 * 110.70812 * 63.80523 * 9 7 2 12 12 C 1.55111 * 101.55943 * 153.90790 * 11 9 7 13 13 N 1.47847 * 104.90572 * 323.15922 * 12 11 9 14 14 C 1.46894 * 110.99783 * 146.24083 * 13 12 11 15 15 C 1.53005 * 109.47336 * 69.16135 * 14 13 12 16 16 C 1.50694 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.38226 * 119.61975 * 124.99752 * 16 15 14 18 18 C 1.38623 * 119.16359 * 179.97438 * 17 16 15 19 19 C 1.38674 * 118.41961 * 0.02562 * 18 17 16 20 20 C 1.38177 * 119.16609 * 359.97438 * 19 18 17 21 21 N 1.31852 * 119.61921 * 304.72074 * 16 15 14 22 22 C 1.47442 * 108.56710 * 23.97420 * 13 12 11 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.99366 * 272.13220 * 11 9 7 25 25 H 1.09000 * 110.98882 * 35.94329 * 11 9 7 26 26 H 1.09004 * 110.42391 * 204.24591 * 12 11 9 27 27 H 1.08997 * 110.31132 * 82.02203 * 12 11 9 28 28 H 1.09001 * 109.47237 * 189.15740 * 14 13 12 29 29 H 1.08995 * 109.47536 * 309.15938 * 14 13 12 30 30 H 1.09001 * 109.46635 * 299.99974 * 15 14 13 31 31 H 1.09000 * 109.47389 * 59.99344 * 15 14 13 32 32 H 1.08007 * 120.41950 * 0.02562 * 17 16 15 33 33 H 1.08000 * 120.79273 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.41604 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.62476 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.88681 * 239.60463 * 22 13 12 37 37 H 1.08994 * 110.02462 * 118.49220 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6084 -2.5715 0.8769 11 6 0.4216 -2.6537 -1.3024 12 6 0.3210 -4.1966 -1.4256 13 7 1.6282 -4.7017 -0.9544 14 6 1.4775 -5.9906 -0.2660 15 6 1.0915 -7.0687 -1.2808 16 6 0.9374 -8.3910 -0.5746 17 6 -0.2443 -9.0976 -0.6976 18 6 -0.3756 -10.3132 -0.0444 19 6 0.6912 -10.7747 0.7119 20 6 1.8417 -10.0132 0.7884 21 7 1.9333 -8.8634 0.1489 22 6 2.2273 -3.6928 -0.0616 23 1 -0.4850 -0.8401 0.0004 24 1 -0.5647 -2.2028 -1.1928 25 1 0.9508 -2.2287 -2.1553 26 1 0.1544 -4.4853 -2.4634 27 1 -0.4822 -4.5751 -0.7935 28 1 2.4200 -6.2607 0.2101 29 1 0.6981 -5.9090 0.4915 30 1 0.1489 -6.7986 -1.7569 31 1 1.8709 -7.1504 -2.0384 32 1 -1.0548 -8.7078 -1.2957 33 1 -1.2870 -10.8873 -0.1227 34 1 0.6240 -11.7177 1.2339 35 1 2.6772 -10.3657 1.3750 36 1 3.1872 -3.3666 -0.4620 37 1 2.3645 -4.1111 0.9354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260613876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:31 Heat of formation + Delta-G solvation = 6.789500 kcal Electronic energy + Delta-G solvation = -17169.621850 eV Core-core repulsion = 14524.236397 eV Total energy + Delta-G solvation = -2645.385454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16244 -39.91989 -36.02450 -34.34823 -33.26263 -31.87621 -30.14178 -29.05671 -26.11383 -24.90672 -24.24554 -22.57375 -21.71874 -21.41063 -19.03203 -17.76181 -17.27073 -16.95837 -16.56115 -15.93258 -15.67583 -15.52856 -15.05817 -14.44895 -14.34625 -14.12447 -13.88077 -13.76934 -13.46282 -13.00780 -12.67841 -12.59072 -12.43229 -12.13465 -12.00052 -11.90861 -11.62305 -11.51186 -10.80305 -10.59589 -10.48508 -10.32141 -9.88817 -9.29338 -8.59702 -6.32549 0.17618 0.38376 1.53529 1.62297 1.79251 2.57184 2.81360 3.01828 3.19340 3.43765 3.76303 3.96281 4.02722 4.06291 4.14753 4.19972 4.26206 4.34699 4.39931 4.42233 4.55516 4.69074 4.75196 4.78235 4.83573 4.96010 5.04055 5.07516 5.19081 5.28161 5.28206 5.33357 5.49129 5.81459 5.99464 6.09505 6.18001 6.22248 6.65137 7.08847 7.47021 8.78869 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.057510 B = 0.003927 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.757287 B = 7128.172902 C = 7338.979829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.030 4.030 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.605 4.605 8 H 0.045 0.955 9 C 0.006 3.994 10 H -0.008 1.008 11 C -0.112 4.112 12 C 0.051 3.949 13 N -0.532 5.532 14 C 0.070 3.930 15 C -0.055 4.055 16 C 0.112 3.888 17 C -0.177 4.177 18 C -0.076 4.076 19 C -0.177 4.177 20 C 0.083 3.917 21 N -0.516 5.516 22 C 0.067 3.933 23 H 0.262 0.738 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.173 0.827 36 H 0.061 0.939 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -21.355 -1.088 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.228 4.228 3 Si 0.942 3.058 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.644 4.644 8 H 0.064 0.936 9 C -0.013 4.013 10 H 0.010 0.990 11 C -0.151 4.151 12 C -0.077 4.077 13 N -0.256 5.256 14 C -0.059 4.059 15 C -0.093 4.093 16 C -0.026 4.026 17 C -0.197 4.197 18 C -0.102 4.102 19 C -0.196 4.196 20 C -0.074 4.074 21 N -0.226 5.226 22 C -0.061 4.061 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.079 0.921 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.360 -19.345 -1.451 19.402 hybrid contribution -1.121 -1.786 0.871 2.281 sum -1.480 -21.130 -0.580 21.190 Atomic orbital electron populations 1.70857 1.07721 1.30505 1.48444 1.27216 0.96680 1.06213 0.92684 0.82895 0.74199 0.71340 0.77417 1.19882 1.20601 1.20450 1.22310 0.94086 0.92688 1.55275 0.93640 1.19995 0.93958 0.94496 0.92856 0.98981 1.22695 0.98914 0.94593 0.98880 1.23092 0.89746 0.94047 1.00778 1.63617 1.22298 1.02814 1.36912 1.22093 1.00115 0.88886 0.94761 1.20411 1.03434 0.88501 0.96969 1.21332 0.90329 0.96263 0.94626 1.22267 0.98593 0.96740 1.02104 1.22018 0.99845 0.94802 0.93493 1.22502 0.94083 1.02436 1.00592 1.23232 0.98657 0.89665 0.95821 1.67441 1.31763 1.15016 1.08429 1.22618 0.98376 0.91336 0.93760 0.92703 0.93455 0.93375 0.88950 0.93876 0.91219 0.96404 0.89114 0.89679 0.83136 0.81765 0.81737 0.81002 0.92066 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.45 21.45 0.29 -57.08 16 2 C -0.03 -1.71 5.35 84.65 0.45 -1.26 16 3 Si 1.12 51.22 29.90 68.60 2.05 53.27 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.61 -35.02 8.48 25.60 0.22 -34.81 16 8 H 0.05 2.62 7.55 -2.91 -0.02 2.60 16 9 C 0.01 0.33 2.45 -10.36 -0.03 0.30 16 10 H -0.01 -0.45 8.00 -2.39 -0.02 -0.47 16 11 C -0.11 -5.32 5.78 32.05 0.19 -5.13 16 12 C 0.05 1.91 5.79 86.84 0.50 2.41 16 13 N -0.53 -20.54 5.16 -885.12 -4.57 -25.11 16 14 C 0.07 2.32 4.43 86.31 0.38 2.70 16 15 C -0.05 -1.46 5.66 29.85 0.17 -1.29 16 16 C 0.11 2.81 6.17 42.55 0.26 3.07 16 17 C -0.18 -3.41 9.71 22.36 0.22 -3.20 16 18 C -0.08 -1.13 10.18 22.47 0.23 -0.90 16 19 C -0.18 -2.59 10.11 22.36 0.23 -2.37 16 20 C 0.08 1.64 11.18 84.67 0.95 2.59 16 21 N -0.52 -13.78 9.89 -183.90 -1.82 -15.59 16 22 C 0.07 3.02 6.45 86.65 0.56 3.58 16 23 H 0.26 16.04 5.44 -92.71 -0.50 15.53 16 24 H 0.05 2.34 6.60 -2.39 -0.02 2.32 16 25 H 0.05 2.41 8.04 -2.39 -0.02 2.39 16 26 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 27 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 28 H 0.07 2.43 7.84 -2.39 -0.02 2.41 16 29 H 0.02 0.62 7.85 -2.39 -0.02 0.60 16 30 H 0.09 2.12 7.22 -2.39 -0.02 2.10 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.15 2.26 7.95 -2.91 -0.02 2.24 16 33 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.06 2.88 7.64 -2.39 -0.02 2.86 16 37 H 0.04 1.63 7.56 -2.39 -0.02 1.61 16 Total: -1.00 -68.72 301.23 1.57 -67.15 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.30 Total: 11.68 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 4.32 Total: -34.31 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -6.10 Total: -97.79 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -68.72 1.57 -67.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260613876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.935 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds