Wall clock time and date at job start Mon Mar 30 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38310 * 119.91600 * 2 1 4 4 C 1.38028 * 119.90769 * 179.97438 * 3 2 1 5 5 C 1.39079 * 120.03276 * 359.97438 * 4 3 2 6 6 C 1.38606 * 120.02232 * 0.15312 * 5 4 3 7 7 C 1.38121 * 119.92012 * 179.97438 * 2 1 3 8 8 C 1.50600 * 121.50185 * 179.74052 * 6 5 4 9 9 C 1.50695 * 109.30050 * 260.32924 * 8 6 5 10 10 H 1.08001 * 119.99781 * 4.68793 * 9 8 6 11 11 C 1.37875 * 120.00277 * 184.68710 * 9 8 6 12 12 N 1.31514 * 119.99743 * 352.02711 * 11 9 8 13 13 Si 1.86795 * 120.00175 * 172.02905 * 11 9 8 14 14 H 1.48496 * 109.47182 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46771 * 120.00113 * 13 11 9 16 16 H 1.48496 * 109.47040 * 239.99769 * 13 11 9 17 17 C 1.52999 * 109.30135 * 140.95289 * 8 6 5 18 18 N 1.46897 * 109.47181 * 304.30545 * 17 8 6 19 19 C 1.52859 * 110.49028 * 20.64295 * 8 6 5 20 20 C 1.53427 * 108.95536 * 308.62404 * 19 8 6 21 21 N 1.39911 * 119.13280 * 180.38651 * 5 4 3 22 22 H 1.08994 * 109.47086 * 90.00236 * 1 2 3 23 23 H 1.09000 * 109.46875 * 209.99997 * 1 2 3 24 24 H 1.08997 * 109.47387 * 329.99828 * 1 2 3 25 25 H 1.08000 * 120.04618 * 359.94706 * 3 2 1 26 26 H 1.07995 * 119.98418 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.84961 * 0.02562 * 7 2 1 28 28 H 0.97000 * 120.00400 * 180.02562 * 12 11 9 29 29 H 1.09006 * 109.46889 * 64.30341 * 17 8 6 30 30 H 1.08995 * 109.47418 * 184.29735 * 17 8 6 31 31 H 1.00905 * 110.99960 * 173.75812 * 18 17 8 32 32 H 1.00902 * 110.99909 * 297.70700 * 18 17 8 33 33 H 1.09001 * 109.57114 * 68.49913 * 19 8 6 34 34 H 1.09000 * 109.57053 * 188.74992 * 19 8 6 35 35 H 1.09000 * 109.79372 * 182.83072 * 20 19 8 36 36 H 1.08998 * 109.79438 * 303.68451 * 20 19 8 37 37 H 0.97005 * 120.54628 * 13.30567 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5771 1.1986 0.0005 5 6 4.2730 -0.0055 0.0016 6 6 3.5809 -1.2065 -0.0011 7 6 2.1959 -1.1971 0.0005 8 6 4.3006 -2.5294 -0.0058 9 6 4.3270 -3.0770 -1.4095 10 1 3.9364 -2.4881 -2.2263 11 6 4.8498 -4.3297 -1.6511 12 7 5.4660 -4.9817 -0.6895 13 14 4.6829 -5.1008 -3.3443 14 1 3.9540 -4.1697 -4.2426 15 1 6.0332 -5.3695 -3.9010 16 1 3.9296 -6.3758 -3.2354 17 6 3.5582 -3.5122 0.9019 18 7 3.4269 -2.9340 2.2459 19 6 5.7339 -2.3606 0.4977 20 6 6.4064 -1.2247 -0.2843 21 7 5.6719 0.0162 0.0104 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6562 2.1338 -0.0009 26 1 4.1169 2.1339 0.0001 27 1 1.6522 -2.1303 0.0005 28 1 5.8342 -5.8628 -0.8595 29 1 2.5672 -3.7077 0.4921 30 1 4.1175 -4.4458 0.9609 31 1 2.8531 -3.5176 2.8361 32 1 4.3326 -2.7782 2.6625 33 1 5.7214 -2.1154 1.5597 34 1 6.2866 -3.2873 0.3434 35 1 7.4457 -1.1257 0.0291 36 1 6.3607 -1.4348 -1.3529 37 1 6.1510 0.8363 0.2079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260746740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:28 Heat of formation + Delta-G solvation = 23.651364 kcal Electronic energy + Delta-G solvation = -18707.113789 eV Core-core repulsion = 16062.459521 eV Total energy + Delta-G solvation = -2644.654268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35045 -36.23119 -34.66260 -32.25701 -31.04730 -30.51703 -28.72964 -26.56302 -25.11637 -23.82166 -22.03886 -21.59189 -20.12848 -18.09384 -16.57036 -16.07821 -15.22780 -14.88987 -14.62034 -13.94542 -13.47357 -13.30418 -13.28450 -12.97434 -12.56557 -12.09161 -12.00482 -11.74807 -11.44641 -11.39239 -11.06790 -10.99476 -10.78328 -10.61308 -10.42051 -10.10848 -9.33737 -9.20610 -9.13940 -8.75480 -8.37875 -7.61076 -7.50694 -6.35421 -6.00539 -4.12871 2.48471 2.55712 3.24304 3.33876 3.40009 4.36960 4.40997 4.87818 5.16815 5.63628 5.73108 5.75460 5.90273 5.94274 6.09847 6.16534 6.31864 6.33594 6.37112 6.54213 6.60024 6.71310 6.75686 7.03026 7.10270 7.16668 7.27235 7.36309 7.45537 7.59092 7.65786 7.82857 7.90505 8.08116 8.16763 8.31564 8.39581 8.50417 8.70205 8.89803 9.51276 10.93985 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.009442 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.195493 B = 2964.624621 C = 3224.821405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.157 4.157 3 C -0.104 4.104 4 C -0.206 4.206 5 C 0.203 3.797 6 C -0.068 4.068 7 C -0.058 4.058 8 C 0.118 3.882 9 C -0.494 4.494 10 H 0.057 0.943 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.072 3.928 18 N -0.853 5.853 19 C -0.123 4.123 20 C 0.133 3.867 21 N -0.758 5.758 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.259 0.741 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.317 0.683 32 H 0.327 0.673 33 H 0.027 0.973 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 6.116 2.995 7.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.228 4.228 5 C 0.101 3.899 6 C -0.072 4.072 7 C -0.076 4.076 8 C 0.117 3.883 9 C -0.533 4.533 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.058 4.058 18 N -0.381 5.381 19 C -0.162 4.162 20 C 0.009 3.991 21 N -0.389 5.389 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.280 6.347 2.581 7.221 hybrid contribution 0.647 -0.989 -0.535 1.297 sum -1.632 5.358 2.046 5.963 Atomic orbital electron populations 1.20558 0.92832 1.01212 1.00760 1.19485 0.94878 0.93477 1.08009 1.20373 0.93285 0.96418 1.02163 1.20408 0.94283 0.95556 1.12581 1.17628 0.83573 0.93137 0.95520 1.19636 0.93201 0.94092 1.00230 1.20627 0.93498 0.96212 0.97311 1.16978 0.89947 0.87130 0.94240 1.21144 1.39163 1.00611 0.92337 0.92486 1.24915 0.94687 0.97115 0.96797 1.69795 1.37065 1.13767 1.32107 0.86590 0.77787 0.79321 0.84722 1.19721 1.21176 1.21009 1.21953 0.98949 0.98296 0.86600 1.59004 1.19247 1.54353 1.05482 1.21962 0.99867 0.98969 0.95392 1.21559 0.93022 0.84251 1.00292 1.44747 1.02711 1.11568 1.79915 0.92785 0.92562 0.93030 0.87963 0.87974 0.87130 0.93040 0.93499 0.92218 0.87311 0.86115 0.95473 0.87843 0.93113 0.91986 0.78264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.01 36.01 0.36 -1.12 16 2 C -0.16 -2.97 5.88 -104.64 -0.62 -3.58 16 3 C -0.10 -1.88 9.70 -39.63 -0.38 -2.27 16 4 C -0.21 -3.87 9.88 -39.35 -0.39 -4.26 16 5 C 0.20 4.24 6.48 -83.72 -0.54 3.70 16 6 C -0.07 -1.51 4.18 -104.44 -0.44 -1.95 16 7 C -0.06 -1.23 8.54 -39.53 -0.34 -1.57 16 8 C 0.12 2.74 0.23 -156.94 -0.04 2.71 16 9 C -0.49 -12.73 7.03 -34.44 -0.24 -12.97 16 10 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 11 C 0.07 1.68 5.09 -17.82 -0.09 1.59 16 12 N -0.89 -22.85 9.36 55.43 0.52 -22.33 16 13 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.07 1.62 4.77 -3.83 -0.02 1.60 16 18 N -0.85 -16.58 8.82 -10.37 -0.09 -16.67 16 19 C -0.12 -2.74 4.63 -26.58 -0.12 -2.86 16 20 C 0.13 2.67 7.03 -3.45 -0.02 2.64 16 21 N -0.76 -14.35 5.80 -57.91 -0.34 -14.69 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 24 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.11 2.39 6.43 -52.49 -0.34 2.05 16 28 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.05 1.09 6.67 -51.93 -0.35 0.75 16 30 H 0.06 1.47 6.18 -51.93 -0.32 1.15 16 31 H 0.32 5.42 9.08 -39.29 -0.36 5.07 16 32 H 0.33 6.26 7.32 -39.29 -0.29 5.97 16 33 H 0.03 0.58 6.48 -51.93 -0.34 0.24 16 34 H 0.10 2.53 5.89 -51.93 -0.31 2.22 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.38 7.40 -51.93 -0.38 1.00 16 37 H 0.38 6.11 8.86 -40.82 -0.36 5.75 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -26.60 287.23 -8.59 -35.19 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.11 Total: 17.09 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.88 Total: -18.35 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.09 Total: -53.69 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.60 -8.59 -35.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.846 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds