Wall clock time and date at job start Mon Mar 30 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38310 * 119.91600 * 2 1 4 4 C 1.38028 * 119.90769 * 179.97438 * 3 2 1 5 5 C 1.39079 * 120.03276 * 359.97438 * 4 3 2 6 6 C 1.38606 * 120.02232 * 0.15312 * 5 4 3 7 7 C 1.38121 * 119.92012 * 179.97438 * 2 1 3 8 8 C 1.50600 * 121.50185 * 179.74052 * 6 5 4 9 9 C 1.50695 * 109.30050 * 260.32924 * 8 6 5 10 10 H 1.08001 * 119.99781 * 4.68793 * 9 8 6 11 11 C 1.37875 * 120.00277 * 184.68710 * 9 8 6 12 12 N 1.31514 * 119.99743 * 352.02711 * 11 9 8 13 13 Si 1.86795 * 120.00175 * 172.02905 * 11 9 8 14 14 H 1.48496 * 109.47182 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46771 * 120.00113 * 13 11 9 16 16 H 1.48496 * 109.47040 * 239.99769 * 13 11 9 17 17 C 1.52999 * 109.30135 * 140.95289 * 8 6 5 18 18 N 1.46897 * 109.47181 * 304.30545 * 17 8 6 19 19 C 1.52859 * 110.49028 * 20.64295 * 8 6 5 20 20 C 1.53427 * 108.95536 * 308.62404 * 19 8 6 21 21 N 1.39911 * 119.13280 * 180.38651 * 5 4 3 22 22 H 1.08994 * 109.47086 * 90.00236 * 1 2 3 23 23 H 1.09000 * 109.46875 * 209.99997 * 1 2 3 24 24 H 1.08997 * 109.47387 * 329.99828 * 1 2 3 25 25 H 1.08000 * 120.04618 * 359.94706 * 3 2 1 26 26 H 1.07995 * 119.98418 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.84961 * 0.02562 * 7 2 1 28 28 H 0.97000 * 120.00400 * 180.02562 * 12 11 9 29 29 H 1.09006 * 109.46889 * 64.30341 * 17 8 6 30 30 H 1.08995 * 109.47418 * 184.29735 * 17 8 6 31 31 H 1.00905 * 110.99960 * 173.75812 * 18 17 8 32 32 H 1.00902 * 110.99909 * 297.70700 * 18 17 8 33 33 H 1.09001 * 109.57114 * 68.49913 * 19 8 6 34 34 H 1.09000 * 109.57053 * 188.74992 * 19 8 6 35 35 H 1.09000 * 109.79372 * 182.83072 * 20 19 8 36 36 H 1.08998 * 109.79438 * 303.68451 * 20 19 8 37 37 H 0.97005 * 120.54628 * 13.30567 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1988 0.0000 4 6 3.5771 1.1986 0.0005 5 6 4.2730 -0.0055 0.0016 6 6 3.5809 -1.2065 -0.0011 7 6 2.1959 -1.1971 0.0005 8 6 4.3006 -2.5294 -0.0058 9 6 4.3270 -3.0770 -1.4095 10 1 3.9364 -2.4881 -2.2263 11 6 4.8498 -4.3297 -1.6511 12 7 5.4660 -4.9817 -0.6895 13 14 4.6829 -5.1008 -3.3443 14 1 3.9540 -4.1697 -4.2426 15 1 6.0332 -5.3695 -3.9010 16 1 3.9296 -6.3758 -3.2354 17 6 3.5582 -3.5122 0.9019 18 7 3.4269 -2.9340 2.2459 19 6 5.7339 -2.3606 0.4977 20 6 6.4064 -1.2247 -0.2843 21 7 5.6719 0.0162 0.0104 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6562 2.1338 -0.0009 26 1 4.1169 2.1339 0.0001 27 1 1.6522 -2.1303 0.0005 28 1 5.8342 -5.8628 -0.8595 29 1 2.5672 -3.7077 0.4921 30 1 4.1175 -4.4458 0.9609 31 1 2.8531 -3.5176 2.8361 32 1 4.3326 -2.7782 2.6625 33 1 5.7214 -2.1154 1.5597 34 1 6.2866 -3.2873 0.3434 35 1 7.4457 -1.1257 0.0291 36 1 6.3607 -1.4348 -1.3529 37 1 6.1510 0.8363 0.2079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260746740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:28 Heat of formation + Delta-G solvation = 7.033806 kcal Electronic energy + Delta-G solvation = -18707.834380 eV Core-core repulsion = 16062.459521 eV Total energy + Delta-G solvation = -2645.374860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93885 -37.83757 -36.27318 -34.13483 -32.55752 -32.11946 -30.31151 -28.22117 -26.72757 -25.63069 -23.59487 -23.19127 -21.75501 -19.83885 -18.11305 -17.88552 -16.85256 -16.74447 -16.25565 -15.64278 -15.00057 -14.96186 -14.76389 -14.32130 -14.10298 -13.92000 -13.60267 -13.38760 -13.04443 -12.84941 -12.79665 -12.72151 -12.45339 -12.36536 -12.04209 -11.89043 -11.04605 -10.97662 -10.90176 -10.39070 -10.22571 -9.22127 -9.16757 -8.07281 -7.76304 -6.13940 0.94961 1.04243 1.37564 1.43223 1.52541 2.44946 2.92449 3.18287 3.33479 4.09224 4.24014 4.34201 4.44707 4.50518 4.64431 4.71633 4.79757 4.85441 4.91281 4.99667 5.06752 5.15478 5.26292 5.31708 5.47042 5.51857 5.56995 5.66057 5.76522 5.80666 6.06175 6.10008 6.27203 6.36974 6.43963 6.61780 6.76967 6.81339 6.96991 7.30952 7.51414 8.95320 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.009442 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.195493 B = 2964.624621 C = 3224.821405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.162 4.162 3 C -0.102 4.102 4 C -0.203 4.203 5 C 0.181 3.819 6 C -0.096 4.096 7 C -0.078 4.078 8 C 0.115 3.885 9 C -0.505 4.505 10 H 0.032 0.968 11 C 0.033 3.967 12 N -0.898 5.898 13 Si 0.935 3.065 14 H -0.279 1.279 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.087 3.913 18 N -0.844 5.844 19 C -0.116 4.116 20 C 0.139 3.861 21 N -0.750 5.750 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.094 0.906 28 H 0.259 0.741 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.332 0.668 32 H 0.331 0.669 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 8.033 3.353 9.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 C -0.120 4.120 4 C -0.225 4.225 5 C 0.079 3.921 6 C -0.100 4.100 7 C -0.097 4.097 8 C 0.114 3.886 9 C -0.544 4.544 10 H 0.050 0.950 11 C -0.166 4.166 12 N -0.538 5.538 13 Si 0.763 3.237 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.044 4.044 18 N -0.373 5.373 19 C -0.155 4.155 20 C 0.014 3.986 21 N -0.383 5.383 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.718 8.278 2.955 9.200 hybrid contribution 0.726 -1.543 -0.634 1.819 sum -1.992 6.734 2.322 7.397 Atomic orbital electron populations 1.20592 0.90314 1.02462 1.01745 1.19890 0.96886 0.92912 1.06678 1.20808 0.93299 0.97457 1.00486 1.20770 0.94884 0.95829 1.11059 1.17866 0.84418 0.93483 0.96343 1.19648 0.93827 0.94172 1.02334 1.20653 0.93412 0.96781 0.98814 1.16922 0.90776 0.88005 0.92878 1.21202 1.39192 1.00817 0.93170 0.94980 1.25386 0.94646 0.97426 0.99184 1.69896 1.37174 1.13746 1.32947 0.85859 0.77657 0.78383 0.81846 1.20427 1.20713 1.20750 1.21631 0.97389 0.97249 0.88094 1.58885 1.19659 1.54239 1.04498 1.21802 0.99168 0.98727 0.95834 1.21384 0.94562 0.84303 0.98343 1.44578 1.02172 1.11780 1.79812 0.91841 0.92598 0.90540 0.84448 0.85121 0.88759 0.93080 0.95177 0.94713 0.85705 0.85683 0.95054 0.90311 0.90080 0.94707 0.76271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.64 10.01 71.24 0.71 -1.93 16 2 C -0.16 -5.82 5.88 -19.88 -0.12 -5.94 16 3 C -0.10 -3.36 9.70 22.24 0.22 -3.15 16 4 C -0.20 -7.05 9.88 22.42 0.22 -6.83 16 5 C 0.18 7.31 6.48 38.14 0.25 7.56 16 6 C -0.10 -4.30 4.18 -19.74 -0.08 -4.38 16 7 C -0.08 -3.32 8.54 22.31 0.19 -3.13 16 8 C 0.12 5.47 0.23 -53.75 -0.01 5.46 16 9 C -0.51 -26.88 7.03 25.60 0.18 -26.70 16 10 H 0.03 1.82 7.75 -2.91 -0.02 1.80 16 11 C 0.03 1.73 5.09 84.65 0.43 2.16 16 12 N -0.90 -47.25 9.36 21.45 0.20 -47.05 16 13 Si 0.94 42.73 29.54 68.60 2.03 44.75 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 C 0.09 4.03 4.77 86.30 0.41 4.44 16 18 N -0.84 -32.83 8.82 -186.72 -1.65 -34.48 16 19 C -0.12 -5.23 4.63 30.69 0.14 -5.09 16 20 C 0.14 5.51 7.03 86.39 0.61 6.12 16 21 N -0.75 -27.24 5.80 -337.13 -1.96 -29.19 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 24 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 25 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.09 4.21 6.43 -2.91 -0.02 4.19 16 28 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 29 H 0.03 1.46 6.67 -2.38 -0.02 1.44 16 30 H 0.03 1.77 6.18 -2.39 -0.01 1.76 16 31 H 0.33 11.24 9.08 -89.69 -0.81 10.43 16 32 H 0.33 12.57 7.32 -89.69 -0.66 11.91 16 33 H 0.03 1.34 6.48 -2.39 -0.02 1.33 16 34 H 0.08 3.93 5.89 -2.39 -0.01 3.91 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.03 1.57 7.40 -2.39 -0.02 1.55 16 37 H 0.40 11.73 8.86 -92.70 -0.82 10.91 16 Total: -1.00 -57.64 287.23 0.59 -57.05 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -1.19 Total: 40.32 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 3.15 Total: -31.41 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.40 Total: -110.72 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -57.64 0.59 -57.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.087 kcal (2) G-P(sol) polarization free energy of solvation -57.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds