Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47575 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00301 * 3 2 1 6 6 H 1.48498 * 109.47114 * 150.00003 * 3 2 1 7 7 C 1.37881 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99766 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.64617 * 298.30264 * 9 7 2 11 11 C 1.54596 * 110.72303 * 61.45654 * 9 7 2 12 12 C 1.53994 * 105.13872 * 140.49139 * 11 9 7 13 13 N 1.47895 * 107.05732 * 1.22388 * 12 11 9 14 14 C 1.46907 * 110.99954 * 214.15217 * 13 12 11 15 15 C 1.53001 * 109.47057 * 174.73469 * 14 13 12 16 16 C 1.50703 * 109.47166 * 174.72940 * 15 14 13 17 17 C 1.38655 * 120.78367 * 269.71923 * 16 15 14 18 18 C 1.38209 * 119.15597 * 179.79482 * 17 16 15 19 19 N 1.31873 * 120.76572 * 0.48883 * 18 17 16 20 20 C 1.31869 * 121.72532 * 359.73815 * 19 18 17 21 21 C 1.38212 * 120.76382 * 0.02562 * 20 19 18 22 22 C 1.48530 * 105.82489 * 334.66791 * 13 12 11 23 23 H 0.97001 * 119.99582 * 0.02562 * 1 2 3 24 24 H 1.09004 * 110.30835 * 21.57389 * 11 9 7 25 25 H 1.08998 * 110.39181 * 259.44992 * 11 9 7 26 26 H 1.08999 * 109.91665 * 241.86810 * 12 11 9 27 27 H 1.09005 * 110.08253 * 120.66680 * 12 11 9 28 28 H 1.08994 * 109.47552 * 294.73417 * 14 13 12 29 29 H 1.09001 * 109.46853 * 54.73631 * 14 13 12 30 30 H 1.09006 * 109.46696 * 294.72602 * 15 14 13 31 31 H 1.08999 * 109.47428 * 54.72492 * 15 14 13 32 32 H 1.07996 * 120.41849 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.61479 * 180.20402 * 18 17 16 34 34 H 1.07996 * 119.61495 * 180.02562 * 20 19 18 35 35 H 1.08004 * 120.41450 * 179.97438 * 21 20 19 36 36 H 1.08999 * 110.66937 * 157.63911 * 22 13 12 37 37 H 1.08993 * 110.66800 * 280.77666 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6404 -2.5904 0.8977 11 6 0.3786 -2.6271 -1.2704 12 6 0.5026 -4.1017 -1.6966 13 7 1.3708 -4.7691 -0.7025 14 6 2.1900 -5.8118 -1.3347 15 6 3.1653 -6.3878 -0.3061 16 6 3.9150 -7.5437 -0.9169 17 6 3.4267 -8.8376 -0.8184 18 6 4.1395 -9.8720 -1.3947 19 7 5.2752 -9.6403 -2.0236 20 6 5.7717 -8.4236 -2.1327 21 6 5.1121 -7.3392 -1.5857 22 6 2.2239 -3.6984 -0.1262 23 1 -0.4849 0.8401 -0.0004 24 1 0.7563 -1.9731 -2.0564 25 1 -0.6597 -2.3848 -1.0439 26 1 0.9545 -4.1654 -2.6865 27 1 -0.4805 -4.5724 -1.7064 28 1 1.5432 -6.6064 -1.7067 29 1 2.7499 -5.3807 -2.1646 30 1 3.8724 -5.6152 -0.0037 31 1 2.6109 -6.7344 0.5660 32 1 2.4997 -9.0343 -0.3004 33 1 3.7642 -10.8824 -1.3253 34 1 6.7045 -8.2727 -2.6556 35 1 5.5241 -6.3451 -1.6781 36 1 2.6008 -3.9923 0.8534 37 1 3.0464 -3.4576 -0.7997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260877710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = 26.609680 kcal Electronic energy + Delta-G solvation = -17161.617398 eV Core-core repulsion = 14517.091412 eV Total energy + Delta-G solvation = -2644.525986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25297 -38.18720 -34.76923 -32.93541 -31.28973 -30.85791 -28.57373 -27.48108 -24.86966 -23.54141 -23.17123 -21.36151 -19.96037 -19.39910 -16.72398 -16.48278 -16.32897 -15.69337 -15.08090 -14.80657 -14.36620 -14.02352 -13.83863 -13.62757 -13.13746 -12.56063 -12.42227 -12.03352 -11.87537 -11.51725 -11.12234 -11.06061 -10.80954 -10.68973 -10.48422 -10.23464 -9.68929 -9.57811 -9.50532 -9.25804 -9.24057 -8.79207 -8.41840 -7.80722 -6.04194 -4.07819 1.03427 1.16346 3.28179 3.35383 3.38098 3.71054 4.34251 4.37193 4.44959 4.67156 4.92550 5.02495 5.05876 5.23708 5.30023 5.33501 5.50258 5.66069 5.73705 5.78175 5.92644 5.95403 6.03219 6.12737 6.25893 6.34992 6.43367 6.50962 6.61562 6.82144 7.10327 7.15277 7.54021 7.64934 7.68724 7.85161 7.85886 8.01309 8.41781 8.94691 9.56588 11.05545 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.004211 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.838765 B = 6648.258712 C = 7073.340951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.036 0.964 11 C -0.102 4.102 12 C 0.034 3.966 13 N -0.522 5.522 14 C 0.057 3.943 15 C -0.084 4.084 16 C -0.028 4.028 17 C -0.170 4.170 18 C 0.095 3.905 19 N -0.495 5.495 20 C 0.097 3.903 21 C -0.171 4.171 22 C 0.039 3.961 23 H 0.260 0.740 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -14.483 -2.890 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.054 0.946 11 C -0.140 4.140 12 C -0.093 4.093 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.121 4.121 16 C -0.037 4.037 17 C -0.190 4.190 18 C -0.061 4.061 19 N -0.204 5.204 20 C -0.060 4.060 21 C -0.191 4.191 22 C -0.088 4.088 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.192 -15.324 -2.860 16.773 hybrid contribution 0.449 2.035 -0.385 2.120 sum 6.641 -13.289 -3.244 15.206 Atomic orbital electron populations 1.69977 1.05878 1.26512 1.50137 1.24966 0.94837 0.99014 0.95014 0.86629 0.79921 0.83599 0.78057 1.20759 1.21206 1.19903 1.21086 0.92763 0.90412 1.51331 0.92661 1.19533 0.92091 0.90907 0.94172 0.94586 1.22314 1.01509 0.90404 0.99807 1.22967 0.96412 0.97274 0.92691 1.64804 1.18959 1.11371 1.29520 1.22140 0.94505 0.95745 0.94778 1.20722 0.97817 0.94733 0.98862 1.20435 0.93924 0.95194 0.94119 1.22116 1.01728 0.93124 1.02031 1.22737 0.90683 0.99402 0.93286 1.67658 1.12759 1.24051 1.15953 1.22734 0.99156 0.87780 0.96328 1.22135 0.96267 1.00902 0.99767 1.23391 0.95794 0.91925 0.97661 0.93016 0.92770 0.92040 0.95464 0.91998 0.91492 0.95167 0.90190 0.89564 0.84682 0.82938 0.82925 0.84782 0.91851 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 12.44 55.43 0.69 -24.54 16 2 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.98 8.43 -34.44 -0.29 -14.27 16 8 H 0.06 1.47 7.78 -52.49 -0.41 1.06 16 9 C 0.05 1.29 2.98 -89.91 -0.27 1.02 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -2.37 5.51 -25.37 -0.14 -2.51 16 12 C 0.03 0.66 6.70 -2.76 -0.02 0.64 16 13 N -0.52 -9.64 5.36 -230.45 -1.24 -10.87 16 14 C 0.06 0.86 4.85 -3.82 -0.02 0.84 16 15 C -0.08 -1.08 5.04 -27.88 -0.14 -1.22 16 16 C -0.03 -0.33 5.17 -104.32 -0.54 -0.87 16 17 C -0.17 -1.82 9.82 -39.44 -0.39 -2.21 16 18 C 0.10 1.02 11.18 -17.54 -0.20 0.82 16 19 N -0.49 -6.03 10.36 -13.25 -0.14 -6.17 16 20 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 21 C -0.17 -1.91 9.82 -39.44 -0.39 -2.30 16 22 C 0.04 0.81 4.74 -1.90 -0.01 0.80 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 25 H 0.06 1.51 8.04 -51.93 -0.42 1.09 16 26 H 0.03 0.49 7.65 -51.93 -0.40 0.10 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.47 7.95 -51.93 -0.41 0.05 16 30 H 0.08 1.07 7.13 -51.93 -0.37 0.69 16 31 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.06 1.24 7.77 -51.93 -0.40 0.83 16 37 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -29.16 304.94 -9.54 -38.70 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.74 Total: -0.94 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.69 Total: -16.74 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.68 Total: -41.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.16 -9.54 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.306 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds