Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47575 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00301 * 3 2 1 6 6 H 1.48498 * 109.47114 * 150.00003 * 3 2 1 7 7 C 1.37881 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99766 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.64617 * 298.30264 * 9 7 2 11 11 C 1.54596 * 110.72303 * 61.45654 * 9 7 2 12 12 C 1.53994 * 105.13872 * 140.49139 * 11 9 7 13 13 N 1.47895 * 107.05732 * 1.22388 * 12 11 9 14 14 C 1.46907 * 110.99954 * 214.15217 * 13 12 11 15 15 C 1.53001 * 109.47057 * 174.73469 * 14 13 12 16 16 C 1.50703 * 109.47166 * 174.72940 * 15 14 13 17 17 C 1.38655 * 120.78367 * 269.71923 * 16 15 14 18 18 C 1.38209 * 119.15597 * 179.79482 * 17 16 15 19 19 N 1.31873 * 120.76572 * 0.48883 * 18 17 16 20 20 C 1.31869 * 121.72532 * 359.73815 * 19 18 17 21 21 C 1.38212 * 120.76382 * 0.02562 * 20 19 18 22 22 C 1.48530 * 105.82489 * 334.66791 * 13 12 11 23 23 H 0.97001 * 119.99582 * 0.02562 * 1 2 3 24 24 H 1.09004 * 110.30835 * 21.57389 * 11 9 7 25 25 H 1.08998 * 110.39181 * 259.44992 * 11 9 7 26 26 H 1.08999 * 109.91665 * 241.86810 * 12 11 9 27 27 H 1.09005 * 110.08253 * 120.66680 * 12 11 9 28 28 H 1.08994 * 109.47552 * 294.73417 * 14 13 12 29 29 H 1.09001 * 109.46853 * 54.73631 * 14 13 12 30 30 H 1.09006 * 109.46696 * 294.72602 * 15 14 13 31 31 H 1.08999 * 109.47428 * 54.72492 * 15 14 13 32 32 H 1.07996 * 120.41849 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.61479 * 180.20402 * 18 17 16 34 34 H 1.07996 * 119.61495 * 180.02562 * 20 19 18 35 35 H 1.08004 * 120.41450 * 179.97438 * 21 20 19 36 36 H 1.08999 * 110.66937 * 157.63911 * 22 13 12 37 37 H 1.08993 * 110.66800 * 280.77666 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6404 -2.5904 0.8977 11 6 0.3786 -2.6271 -1.2704 12 6 0.5026 -4.1017 -1.6966 13 7 1.3708 -4.7691 -0.7025 14 6 2.1900 -5.8118 -1.3347 15 6 3.1653 -6.3878 -0.3061 16 6 3.9150 -7.5437 -0.9169 17 6 3.4267 -8.8376 -0.8184 18 6 4.1395 -9.8720 -1.3947 19 7 5.2752 -9.6403 -2.0236 20 6 5.7717 -8.4236 -2.1327 21 6 5.1121 -7.3392 -1.5857 22 6 2.2239 -3.6984 -0.1262 23 1 -0.4849 0.8401 -0.0004 24 1 0.7563 -1.9731 -2.0564 25 1 -0.6597 -2.3848 -1.0439 26 1 0.9545 -4.1654 -2.6865 27 1 -0.4805 -4.5724 -1.7064 28 1 1.5432 -6.6064 -1.7067 29 1 2.7499 -5.3807 -2.1646 30 1 3.8724 -5.6152 -0.0037 31 1 2.6109 -6.7344 0.5660 32 1 2.4997 -9.0343 -0.3004 33 1 3.7642 -10.8824 -1.3253 34 1 6.7045 -8.2727 -2.6556 35 1 5.5241 -6.3451 -1.6781 36 1 2.6008 -3.9923 0.8534 37 1 3.0464 -3.4576 -0.7997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260877710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = 9.126270 kcal Electronic energy + Delta-G solvation = -17162.375535 eV Core-core repulsion = 14517.091412 eV Total energy + Delta-G solvation = -2645.284124 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10049 -39.74317 -36.03963 -34.66756 -32.37936 -32.08179 -30.23527 -28.87649 -26.69987 -24.45361 -24.34555 -22.52113 -21.55695 -21.11496 -18.41444 -17.59380 -17.33650 -16.73153 -16.57073 -16.37353 -15.94315 -15.30926 -14.87023 -14.63900 -14.41563 -14.13625 -13.86728 -13.40786 -13.26346 -13.03259 -12.77836 -12.58553 -12.41454 -12.30781 -12.11268 -11.72531 -11.57598 -11.11997 -10.81497 -10.50785 -10.44709 -10.40491 -10.05139 -9.29758 -8.13691 -6.24277 0.23990 0.30433 1.41328 1.42328 1.52415 2.42396 2.87114 3.13603 3.19337 3.62742 3.78538 3.87727 4.07488 4.12651 4.23834 4.24285 4.29016 4.44930 4.51342 4.60053 4.62992 4.76470 4.85178 4.85627 4.97196 5.02918 5.09616 5.15767 5.26717 5.30766 5.49637 5.61254 5.78606 5.82890 5.86401 6.01597 6.26113 6.39160 6.86178 7.05396 7.43846 8.95695 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.004211 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.838765 B = 6648.258712 C = 7073.340951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.002 0.998 11 C -0.094 4.094 12 C 0.043 3.957 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.074 4.074 16 C -0.040 4.040 17 C -0.171 4.171 18 C 0.090 3.910 19 N -0.517 5.517 20 C 0.089 3.911 21 C -0.178 4.178 22 C 0.056 3.944 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.143 0.857 36 H 0.072 0.928 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -15.586 -3.324 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.021 3.979 10 H 0.020 0.980 11 C -0.133 4.133 12 C -0.085 4.085 13 N -0.249 5.249 14 C -0.069 4.069 15 C -0.111 4.111 16 C -0.049 4.049 17 C -0.190 4.190 18 C -0.066 4.066 19 N -0.227 5.227 20 C -0.067 4.067 21 C -0.197 4.197 22 C -0.072 4.072 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.191 0.809 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.250 -16.444 -3.297 18.271 hybrid contribution 0.110 2.332 -0.242 2.347 sum 7.360 -14.111 -3.539 16.304 Atomic orbital electron populations 1.70105 1.07305 1.27273 1.51013 1.25763 0.95647 1.02466 0.94701 0.85606 0.78815 0.79338 0.78212 1.20182 1.21011 1.19047 1.21449 0.93024 0.91728 1.51078 0.92593 1.19513 0.92902 0.92215 0.93289 0.97971 1.22094 0.99513 0.93103 0.98541 1.22851 0.97778 0.94424 0.93414 1.64793 1.19181 1.11061 1.29874 1.22202 0.94726 0.94814 0.95119 1.20573 0.97255 0.94972 0.98349 1.20404 0.94350 0.95250 0.94867 1.22326 1.02300 0.92643 1.01764 1.23184 0.90213 1.00655 0.92584 1.67704 1.13599 1.24673 1.16695 1.23101 0.99893 0.87421 0.96249 1.22294 0.96257 1.01508 0.99688 1.23123 0.94792 0.90848 0.98425 0.93053 0.94892 0.94404 0.93980 0.90422 0.90038 0.95334 0.90811 0.89342 0.82962 0.80472 0.80862 0.83944 0.90942 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.38 12.44 21.45 0.27 -53.11 16 2 C 0.01 0.74 5.33 84.66 0.45 1.19 16 3 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.53 -29.25 8.43 25.60 0.22 -29.03 16 8 H 0.06 2.98 7.78 -2.91 -0.02 2.95 16 9 C 0.04 2.01 2.98 -10.33 -0.03 1.98 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.09 -4.45 5.51 31.47 0.17 -4.27 16 12 C 0.04 1.61 6.70 86.45 0.58 2.19 16 13 N -0.52 -18.59 5.36 -883.02 -4.73 -23.32 16 14 C 0.06 1.65 4.85 86.30 0.42 2.07 16 15 C -0.07 -1.76 5.04 29.85 0.15 -1.61 16 16 C -0.04 -0.86 5.17 -19.67 -0.10 -0.96 16 17 C -0.17 -3.22 9.82 22.36 0.22 -3.01 16 18 C 0.09 1.70 11.18 84.68 0.95 2.65 16 19 N -0.52 -11.59 10.36 -195.83 -2.03 -13.62 16 20 C 0.09 1.80 11.18 84.68 0.95 2.74 16 21 C -0.18 -3.65 9.82 22.36 0.22 -3.43 16 22 C 0.06 2.24 4.74 86.65 0.41 2.65 16 23 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 24 H 0.03 1.65 7.84 -2.39 -0.02 1.63 16 25 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 26 H 0.04 1.45 7.65 -2.39 -0.02 1.43 16 27 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 0.81 7.95 -2.39 -0.02 0.80 16 30 H 0.07 1.84 7.13 -2.38 -0.02 1.82 16 31 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.07 2.77 7.77 -2.39 -0.02 2.75 16 37 H 0.03 1.34 7.92 -2.39 -0.02 1.33 16 Total: -1.00 -62.50 304.94 1.16 -61.34 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.03 Total: 10.28 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.60 Total: -26.83 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -6.50 Total: -90.05 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.50 1.16 -61.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.469 kcal (2) G-P(sol) polarization free energy of solvation -62.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds