Wall clock time and date at job start Mon Mar 30 2020 04:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46432 * 111.00046 * 2 1 4 4 C 1.53380 * 108.66398 * 287.80705 * 3 2 1 5 5 C 1.53047 * 107.93171 * 291.76931 * 4 3 2 6 6 C 1.50804 * 109.65513 * 47.30259 * 5 4 3 7 7 C 1.38612 * 118.11938 * 164.51311 * 6 5 4 8 8 C 1.38057 * 120.48554 * 179.58840 * 7 6 5 9 9 C 1.38312 * 119.88935 * 359.77463 * 8 7 6 10 10 C 1.37806 * 119.94728 * 0.67217 * 9 8 7 11 11 C 1.50704 * 119.78841 * 179.63007 * 10 9 8 12 12 H 1.08996 * 109.47373 * 156.32163 * 11 10 9 13 13 N 1.46897 * 109.47183 * 36.31293 * 11 10 9 14 14 C 1.50705 * 109.46997 * 276.31865 * 11 10 9 15 15 H 1.08004 * 120.00003 * 24.47825 * 14 11 10 16 16 C 1.37875 * 120.00226 * 204.48149 * 14 11 10 17 17 N 1.31516 * 119.99856 * 0.55433 * 16 14 11 18 18 Si 1.86795 * 120.00047 * 180.56095 * 16 14 11 19 19 H 1.48506 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47311 * 299.99484 * 18 16 14 21 21 H 1.48505 * 109.47403 * 59.99815 * 18 16 14 22 22 C 1.38373 * 122.01491 * 344.34704 * 6 5 4 23 23 H 1.08998 * 109.47096 * 194.18413 * 1 2 3 24 24 H 1.09008 * 109.47100 * 314.18371 * 1 2 3 25 25 H 1.08994 * 109.46829 * 74.18158 * 1 2 3 26 26 H 1.09000 * 109.60014 * 47.56039 * 3 2 1 27 27 H 1.09001 * 109.60130 * 167.88562 * 3 2 1 28 28 H 1.08998 * 109.76516 * 51.37913 * 4 3 2 29 29 H 1.08995 * 109.76778 * 172.10639 * 4 3 2 30 30 H 1.08992 * 109.43685 * 167.36341 * 5 4 3 31 31 H 1.09004 * 109.43773 * 287.25205 * 5 4 3 32 32 H 1.08001 * 119.75769 * 359.60836 * 7 6 5 33 33 H 1.08001 * 120.05573 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.02648 * 180.40062 * 9 8 7 35 35 H 1.00902 * 111.00117 * 177.73613 * 13 11 10 36 36 H 1.00903 * 111.00473 * 301.69693 * 13 11 10 37 37 H 0.97005 * 119.99761 * 357.70882 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3671 0.0000 4 6 1.7548 1.9846 -1.3835 5 6 2.6507 1.2541 -2.3866 6 6 2.5260 -0.2355 -2.1873 7 6 2.9928 -1.0702 -3.1906 8 6 2.9107 -2.4417 -3.0554 9 6 2.3634 -2.9897 -1.9094 10 6 1.8889 -2.1660 -0.9118 11 6 1.2857 -2.7670 0.3317 12 1 1.3542 -2.0516 1.1511 13 7 2.0157 -3.9910 0.6877 14 6 -0.1615 -3.1015 0.0767 15 1 -0.5047 -3.2816 -0.9314 16 6 -1.0475 -3.1776 1.1304 17 7 -0.6320 -2.9474 2.3568 18 14 -2.8379 -3.6076 0.8161 19 1 -3.5763 -3.6252 2.1044 20 1 -3.4397 -2.5930 -0.0860 21 1 -2.9211 -4.9470 0.1801 22 6 1.9686 -0.7783 -1.0430 23 1 -0.3633 -0.9963 0.2518 24 1 -0.3634 0.7163 0.7370 25 1 -0.3633 0.2801 -0.9887 26 1 1.4779 1.9567 0.7578 27 1 3.0621 1.3486 0.2155 28 1 0.7092 1.8626 -1.6660 29 1 2.0100 3.0440 -1.3634 30 1 2.3447 1.5114 -3.4006 31 1 3.6871 1.5551 -2.2336 32 1 3.4241 -0.6446 -4.0846 33 1 3.2769 -3.0856 -3.8413 34 1 2.3040 -4.0624 -1.7985 35 1 1.6537 -4.3931 1.5394 36 1 1.9902 -4.6599 -0.0673 37 1 0.3044 -2.7569 2.5239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:11 Heat of formation + Delta-G solvation = 24.271925 kcal Electronic energy + Delta-G solvation = -18692.554362 eV Core-core repulsion = 16047.927004 eV Total energy + Delta-G solvation = -2644.627359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12674 -36.58892 -35.28342 -32.88776 -31.34549 -29.82116 -28.73886 -26.55986 -25.30593 -23.57667 -22.73719 -22.52124 -19.80107 -18.91974 -16.87348 -16.31602 -15.80963 -15.03089 -14.46972 -13.98418 -13.83188 -13.75366 -13.50102 -13.13940 -12.89439 -12.53479 -12.27661 -12.08470 -11.78351 -11.45913 -11.25697 -11.17417 -10.86542 -10.70294 -10.49409 -10.22969 -10.11283 -9.58429 -9.46697 -8.71519 -8.40626 -7.92559 -7.33589 -7.07013 -6.42070 -4.21786 2.02078 2.14237 3.35216 3.36721 3.55301 4.31454 4.42851 4.56489 5.04891 5.06901 5.14928 5.24092 5.46051 5.60897 5.69965 5.76402 5.87982 5.91330 5.96227 6.06130 6.08138 6.17957 6.28108 6.41407 6.47377 6.53141 6.70863 6.91548 7.04121 7.18054 7.23784 7.49403 7.61557 7.71768 8.00608 8.15865 8.24724 8.58272 8.71300 8.77619 9.47680 10.88293 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.009249 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.233808 B = 3026.513625 C = 3588.418410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.489 5.489 3 C 0.055 3.945 4 C -0.157 4.157 5 C -0.071 4.071 6 C -0.130 4.130 7 C -0.133 4.133 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.021 4.021 11 C 0.221 3.779 12 H 0.073 0.927 13 N -0.854 5.854 14 C -0.618 4.618 15 H 0.046 0.954 16 C 0.030 3.970 17 N -0.899 5.899 18 Si 1.060 2.940 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.288 1.288 22 C 0.110 3.890 23 H 0.133 0.867 24 H 0.055 0.945 25 H 0.017 0.983 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.331 0.669 36 H 0.316 0.684 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 6.442 -7.473 10.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.204 5.204 3 C -0.073 4.073 4 C -0.196 4.196 5 C -0.108 4.108 6 C -0.133 4.133 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.129 4.129 10 C -0.024 4.024 11 C 0.112 3.888 12 H 0.091 0.909 13 N -0.381 5.381 14 C -0.658 4.658 15 H 0.065 0.935 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.888 3.112 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C 0.013 3.987 23 H 0.150 0.850 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.435 6.555 -6.161 9.630 hybrid contribution 0.308 0.142 -1.791 1.823 sum 3.743 6.697 -7.952 11.050 Atomic orbital electron populations 1.23049 0.84292 1.07907 0.98660 1.58458 1.09084 1.11146 1.41714 1.22242 1.00787 0.88607 0.95671 1.22187 1.00425 0.99554 0.97470 1.20410 0.99682 0.91537 0.99137 1.19763 1.04523 0.95064 0.93975 1.20644 1.02761 0.93447 0.98278 1.20896 1.02022 0.94697 0.98085 1.20739 0.99256 0.99568 0.93324 1.20183 0.94135 0.91007 0.97045 1.18269 0.89837 0.89416 0.91289 0.90918 1.59633 1.61287 1.09474 1.07727 1.22496 0.94992 1.52630 0.95699 0.93528 1.25791 1.05270 0.93811 0.92867 1.70802 1.19459 1.42488 1.20666 0.83667 0.75123 0.76597 0.75796 1.20657 1.21360 1.21449 1.18273 0.99389 0.92318 0.88741 0.84959 0.92651 0.96440 0.90603 0.90864 0.91565 0.91399 0.91406 0.91303 0.87439 0.87229 0.86592 0.85800 0.87311 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.70 60.06 0.52 0.63 16 2 N -0.49 -9.88 3.70 -179.13 -0.66 -10.54 16 3 C 0.05 0.89 5.81 -3.88 -0.02 0.86 16 4 C -0.16 -2.22 6.03 -26.51 -0.16 -2.38 16 5 C -0.07 -1.03 5.81 -27.81 -0.16 -1.19 16 6 C -0.13 -2.38 5.74 -104.38 -0.60 -2.98 16 7 C -0.13 -2.27 9.63 -39.51 -0.38 -2.65 16 8 C -0.14 -2.45 10.05 -39.62 -0.40 -2.85 16 9 C -0.11 -2.24 9.28 -39.71 -0.37 -2.60 16 10 C -0.02 -0.48 4.88 -104.26 -0.51 -0.99 16 11 C 0.22 5.36 1.83 -70.01 -0.13 5.23 16 12 H 0.07 1.96 5.51 -51.93 -0.29 1.67 16 13 N -0.85 -19.50 9.03 -6.65 -0.06 -19.56 16 14 C -0.62 -15.97 6.41 -34.44 -0.22 -16.19 16 15 H 0.05 1.26 7.80 -52.48 -0.41 0.85 16 16 C 0.03 0.78 4.74 -17.82 -0.08 0.70 16 17 N -0.90 -24.96 13.62 55.43 0.76 -24.21 16 18 Si 1.06 23.87 29.90 -169.99 -5.08 18.79 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 22 C 0.11 2.30 5.08 -83.85 -0.43 1.87 16 23 H 0.13 3.22 3.62 -51.93 -0.19 3.03 16 24 H 0.05 1.05 7.81 -51.92 -0.41 0.64 16 25 H 0.02 0.34 7.04 -51.93 -0.37 -0.02 16 26 H 0.08 1.12 7.82 -51.93 -0.41 0.71 16 27 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 28 H 0.07 1.00 6.72 -51.93 -0.35 0.65 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.12 2.26 6.47 -52.49 -0.34 1.93 16 35 H 0.33 7.77 8.83 -39.29 -0.35 7.43 16 36 H 0.32 6.79 7.17 -39.29 -0.28 6.51 16 37 H 0.28 7.75 6.49 -40.82 -0.27 7.49 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -27.64 285.52 -8.66 -36.30 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -4.97 Total: 17.45 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.94 Total: -22.53 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.03 Total: -54.31 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.08 Total: 18.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.64 -8.66 -36.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.572 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds