Wall clock time and date at job start Mon Mar 30 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46432 * 111.00046 * 2 1 4 4 C 1.53380 * 108.66398 * 287.80705 * 3 2 1 5 5 C 1.53047 * 107.93171 * 291.76931 * 4 3 2 6 6 C 1.50804 * 109.65513 * 47.30259 * 5 4 3 7 7 C 1.38612 * 118.11938 * 164.51311 * 6 5 4 8 8 C 1.38057 * 120.48554 * 179.58840 * 7 6 5 9 9 C 1.38312 * 119.88935 * 359.77463 * 8 7 6 10 10 C 1.37806 * 119.94728 * 0.67217 * 9 8 7 11 11 C 1.50704 * 119.78841 * 179.63007 * 10 9 8 12 12 H 1.08996 * 109.47373 * 156.32163 * 11 10 9 13 13 N 1.46897 * 109.47183 * 36.31293 * 11 10 9 14 14 C 1.50705 * 109.46997 * 276.31865 * 11 10 9 15 15 H 1.08004 * 120.00003 * 24.47825 * 14 11 10 16 16 C 1.37875 * 120.00226 * 204.48149 * 14 11 10 17 17 N 1.31516 * 119.99856 * 0.55433 * 16 14 11 18 18 Si 1.86795 * 120.00047 * 180.56095 * 16 14 11 19 19 H 1.48506 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47311 * 299.99484 * 18 16 14 21 21 H 1.48505 * 109.47403 * 59.99815 * 18 16 14 22 22 C 1.38373 * 122.01491 * 344.34704 * 6 5 4 23 23 H 1.08998 * 109.47096 * 194.18413 * 1 2 3 24 24 H 1.09008 * 109.47100 * 314.18371 * 1 2 3 25 25 H 1.08994 * 109.46829 * 74.18158 * 1 2 3 26 26 H 1.09000 * 109.60014 * 47.56039 * 3 2 1 27 27 H 1.09001 * 109.60130 * 167.88562 * 3 2 1 28 28 H 1.08998 * 109.76516 * 51.37913 * 4 3 2 29 29 H 1.08995 * 109.76778 * 172.10639 * 4 3 2 30 30 H 1.08992 * 109.43685 * 167.36341 * 5 4 3 31 31 H 1.09004 * 109.43773 * 287.25205 * 5 4 3 32 32 H 1.08001 * 119.75769 * 359.60836 * 7 6 5 33 33 H 1.08001 * 120.05573 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.02648 * 180.40062 * 9 8 7 35 35 H 1.00902 * 111.00117 * 177.73613 * 13 11 10 36 36 H 1.00903 * 111.00473 * 301.69693 * 13 11 10 37 37 H 0.97005 * 119.99761 * 357.70882 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3671 0.0000 4 6 1.7548 1.9846 -1.3835 5 6 2.6507 1.2541 -2.3866 6 6 2.5260 -0.2355 -2.1873 7 6 2.9928 -1.0702 -3.1906 8 6 2.9107 -2.4417 -3.0554 9 6 2.3634 -2.9897 -1.9094 10 6 1.8889 -2.1660 -0.9118 11 6 1.2857 -2.7670 0.3317 12 1 1.3542 -2.0516 1.1511 13 7 2.0157 -3.9910 0.6877 14 6 -0.1615 -3.1015 0.0767 15 1 -0.5047 -3.2816 -0.9314 16 6 -1.0475 -3.1776 1.1304 17 7 -0.6320 -2.9474 2.3568 18 14 -2.8379 -3.6076 0.8161 19 1 -3.5763 -3.6252 2.1044 20 1 -3.4397 -2.5930 -0.0860 21 1 -2.9211 -4.9470 0.1801 22 6 1.9686 -0.7783 -1.0430 23 1 -0.3633 -0.9963 0.2518 24 1 -0.3634 0.7163 0.7370 25 1 -0.3633 0.2801 -0.9887 26 1 1.4779 1.9567 0.7578 27 1 3.0621 1.3486 0.2155 28 1 0.7092 1.8626 -1.6660 29 1 2.0100 3.0440 -1.3634 30 1 2.3447 1.5114 -3.4006 31 1 3.6871 1.5551 -2.2336 32 1 3.4241 -0.6446 -4.0846 33 1 3.2769 -3.0856 -3.8413 34 1 2.3040 -4.0624 -1.7985 35 1 1.6537 -4.3931 1.5394 36 1 1.9902 -4.6599 -0.0673 37 1 0.3044 -2.7569 2.5239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:10 Heat of formation + Delta-G solvation = 6.914714 kcal Electronic energy + Delta-G solvation = -18693.307028 eV Core-core repulsion = 16047.927004 eV Total energy + Delta-G solvation = -2645.380024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55574 -38.06724 -36.98946 -34.40668 -33.16017 -31.20094 -30.29110 -28.18722 -27.05929 -25.11353 -24.34503 -23.91324 -21.40531 -20.28433 -18.80739 -17.85523 -17.31548 -16.45483 -15.94568 -15.68689 -15.42692 -15.15683 -14.95860 -14.77490 -14.44866 -14.18972 -13.70864 -13.66972 -13.41479 -12.96680 -12.86621 -12.57610 -12.39098 -12.16221 -12.01365 -11.78920 -11.51884 -11.39833 -11.30756 -10.58208 -9.99227 -9.46816 -9.13965 -8.69882 -8.42105 -6.30346 0.56642 0.66513 1.51381 1.55544 1.75723 2.52681 2.87825 3.11581 3.22926 3.84409 3.87262 3.99509 4.08458 4.23894 4.38325 4.45419 4.48133 4.53455 4.61082 4.69234 4.79740 4.81053 4.87412 4.96500 5.11827 5.12772 5.23420 5.37077 5.44711 5.64844 5.72302 5.83056 6.00110 6.04567 6.14808 6.29512 6.59902 6.66254 6.71003 6.90315 7.44885 8.77559 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.009249 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.233808 B = 3026.513625 C = 3588.418410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.510 5.510 3 C 0.050 3.950 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.127 4.127 8 C -0.136 4.136 9 C -0.128 4.128 10 C -0.061 4.061 11 C 0.230 3.770 12 H 0.040 0.960 13 N -0.848 5.848 14 C -0.610 4.610 15 H 0.030 0.970 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 1.100 2.900 19 H -0.284 1.284 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.087 3.913 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.019 0.981 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.324 0.676 36 H 0.324 0.676 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 7.883 -9.823 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.226 5.226 3 C -0.077 4.077 4 C -0.188 4.188 5 C -0.106 4.106 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.147 4.147 10 C -0.063 4.063 11 C 0.121 3.879 12 H 0.058 0.942 13 N -0.375 5.375 14 C -0.650 4.650 15 H 0.048 0.952 16 C -0.210 4.210 17 N -0.558 5.558 18 Si 0.924 3.076 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.009 4.009 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.161 7.998 -8.534 12.414 hybrid contribution 0.184 -0.281 -1.119 1.168 sum 4.344 7.717 -9.652 13.099 Atomic orbital electron populations 1.22784 0.85408 1.05849 0.98898 1.58341 1.08364 1.13480 1.42376 1.22367 1.00790 0.86837 0.97691 1.22133 0.99707 1.01315 0.95633 1.20522 1.00947 0.88743 1.00386 1.20253 1.02996 0.97627 0.92921 1.21133 1.01216 0.93093 0.99051 1.21256 1.00773 0.95800 0.97627 1.20860 1.00164 0.99384 0.94247 1.20209 0.96599 0.92484 0.96999 1.17980 0.89450 0.88937 0.91512 0.94181 1.59584 1.60827 1.09415 1.07645 1.22535 0.96121 1.51752 0.94568 0.95184 1.26858 1.08359 0.93346 0.92455 1.70907 1.18605 1.44712 1.21528 0.83136 0.71588 0.77170 0.75752 1.20964 1.20124 1.20226 1.18492 1.00461 0.91901 0.90094 0.88609 0.91666 0.96235 0.89683 0.90609 0.92829 0.87986 0.89145 0.89327 0.83545 0.83973 0.86929 0.86597 0.86480 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 8.70 127.69 1.11 1.78 16 2 N -0.51 -20.72 3.70 -720.64 -2.67 -23.39 16 3 C 0.05 1.55 5.81 86.52 0.50 2.05 16 4 C -0.15 -3.73 6.03 30.74 0.19 -3.54 16 5 C -0.07 -1.72 5.81 29.90 0.17 -1.55 16 6 C -0.14 -4.57 5.74 -19.71 -0.11 -4.69 16 7 C -0.13 -3.86 9.63 22.32 0.21 -3.64 16 8 C -0.14 -4.47 10.05 22.24 0.22 -4.24 16 9 C -0.13 -5.15 9.28 22.19 0.21 -4.94 16 10 C -0.06 -2.77 4.88 -19.63 -0.10 -2.86 16 11 C 0.23 11.65 1.83 43.43 0.08 11.73 16 12 H 0.04 2.29 5.51 -2.39 -0.01 2.27 16 13 N -0.85 -40.18 9.03 -174.95 -1.58 -41.76 16 14 C -0.61 -32.58 6.41 25.60 0.16 -32.41 16 15 H 0.03 1.67 7.80 -2.91 -0.02 1.64 16 16 C -0.01 -0.45 4.74 84.65 0.40 -0.05 16 17 N -0.92 -53.01 13.62 21.45 0.29 -52.71 16 18 Si 1.10 48.82 29.90 68.60 2.05 50.87 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.09 3.62 5.08 38.30 0.19 3.82 16 23 H 0.10 4.84 3.62 -2.39 -0.01 4.83 16 24 H 0.06 2.52 7.81 -2.38 -0.02 2.50 16 25 H 0.02 0.78 7.04 -2.39 -0.02 0.76 16 26 H 0.08 2.40 7.82 -2.39 -0.02 2.38 16 27 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 28 H 0.05 1.49 6.72 -2.39 -0.02 1.47 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.11 4.44 6.47 -2.91 -0.02 4.42 16 35 H 0.32 15.91 8.83 -89.69 -0.79 15.12 16 36 H 0.32 14.33 7.17 -89.69 -0.64 13.69 16 37 H 0.26 15.51 6.49 -92.70 -0.60 14.90 16 Total: -1.00 -61.79 285.52 1.17 -60.62 By element: Atomic # 1 Polarization: 45.11 SS G_CDS: -0.17 Total: 44.94 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.25 Total: -38.56 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.96 Total: -117.86 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.05 Total: 50.87 kcal Total: -61.79 1.17 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.535 kcal (2) G-P(sol) polarization free energy of solvation -61.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds