Wall clock time and date at job start Mon Mar 30 2020 04:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46420 * 110.99937 * 2 1 4 4 C 1.53371 * 108.67363 * 178.98681 * 3 2 1 5 5 C 1.53310 * 107.70613 * 291.56145 * 4 3 2 6 6 C 1.50802 * 109.57242 * 47.75657 * 5 4 3 7 7 C 1.38615 * 118.13079 * 163.82931 * 6 5 4 8 8 C 1.38055 * 120.48355 * 179.38610 * 7 6 5 9 9 C 1.38317 * 119.88869 * 359.97438 * 8 7 6 10 10 C 1.37806 * 119.95410 * 0.13040 * 9 8 7 11 11 C 1.50700 * 119.79261 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46689 * 120.87330 * 11 10 9 13 13 N 1.46894 * 109.47449 * 240.87593 * 11 10 9 14 14 C 1.50701 * 109.46834 * 0.87852 * 11 10 9 15 15 H 1.08000 * 120.00215 * 354.48358 * 14 11 10 16 16 C 1.37888 * 119.99593 * 174.48141 * 14 11 10 17 17 N 1.31514 * 120.00050 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99701 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46721 * 60.00348 * 18 16 14 20 20 H 1.48495 * 109.47137 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47320 * 300.00331 * 18 16 14 22 22 C 1.38371 * 122.00794 * 343.71194 * 6 5 4 23 23 H 1.08996 * 109.46825 * 266.67934 * 1 2 3 24 24 H 1.09000 * 109.47017 * 26.67775 * 1 2 3 25 25 H 1.08994 * 109.47545 * 146.67754 * 1 2 3 26 26 H 1.09000 * 109.61038 * 298.74665 * 3 2 1 27 27 H 1.09003 * 109.60743 * 59.06888 * 3 2 1 28 28 H 1.09002 * 109.76421 * 51.45083 * 4 3 2 29 29 H 1.08999 * 109.77084 * 172.17907 * 4 3 2 30 30 H 1.08996 * 109.94853 * 287.43641 * 5 4 3 31 31 H 1.09008 * 109.01881 * 167.50190 * 5 4 3 32 32 H 1.08001 * 119.76312 * 359.36580 * 7 6 5 33 33 H 1.08001 * 120.05882 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.02337 * 180.15864 * 9 8 7 35 35 H 1.00898 * 111.00200 * 59.99818 * 13 11 10 36 36 H 1.00903 * 111.00224 * 183.95861 * 13 11 10 37 37 H 0.96995 * 119.99974 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 3.5260 1.3048 0.0257 5 6 3.9476 0.7582 1.3946 6 6 3.1352 -0.4698 1.7202 7 6 3.5856 -1.3016 2.7335 8 6 2.8731 -2.4321 3.0803 9 6 1.7006 -2.7392 2.4139 10 6 1.2478 -1.9182 1.4040 11 6 -0.0298 -2.2566 0.6800 12 1 -0.7397 -1.4373 0.7936 13 7 0.2554 -2.4632 -0.7461 14 6 -0.6186 -3.5158 1.2621 15 1 -0.0745 -4.0694 2.0130 16 6 -1.8521 -3.9611 0.8359 17 7 -2.5144 -3.2872 -0.0788 18 14 -2.5816 -5.5222 1.5570 19 1 -2.7459 -5.3601 3.0240 20 1 -3.9051 -5.7828 0.9360 21 1 -1.6736 -6.6651 1.2838 22 6 1.9687 -0.7783 1.0430 23 1 -0.3633 -0.0595 1.0259 24 1 -0.3633 0.9183 -0.4614 25 1 -0.3634 -0.8586 -0.5645 26 1 1.6639 1.8855 -0.9002 27 1 1.6321 1.8976 0.8808 28 1 3.8815 0.6460 -0.7666 29 1 3.9379 2.3043 -0.1134 30 1 3.7858 1.5144 2.1628 31 1 5.0050 0.4955 1.3619 32 1 4.5008 -1.0638 3.2554 33 1 3.2301 -3.0751 3.8712 34 1 1.1401 -3.6217 2.6852 35 1 0.9117 -3.2182 -0.8780 36 1 -0.5943 -2.6280 -1.2647 37 1 -3.3822 -3.6002 -0.3783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:13 Heat of formation + Delta-G solvation = 81.137392 kcal Electronic energy + Delta-G solvation = -18610.235333 eV Core-core repulsion = 15968.073846 eV Total energy + Delta-G solvation = -2642.161487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18874 -36.21667 -35.78935 -32.95864 -31.04478 -29.82708 -29.05284 -26.48639 -25.56670 -23.92318 -22.64526 -21.76910 -19.84812 -18.99737 -16.44942 -16.10009 -15.40064 -15.20106 -14.63704 -14.40215 -13.67647 -13.58160 -13.45575 -13.07882 -12.84052 -12.62007 -12.09188 -11.91804 -11.60474 -11.29932 -11.14676 -10.96449 -10.85439 -10.66510 -10.37555 -10.34311 -9.94226 -9.56406 -9.07717 -8.89524 -8.39717 -7.72636 -7.12184 -6.73893 -6.08410 -4.20190 2.19080 2.23101 3.24586 3.29917 3.32700 4.33187 4.36937 4.66099 5.06307 5.16032 5.18194 5.31744 5.58220 5.72978 5.78828 5.80701 5.88408 5.98595 6.01744 6.12848 6.25350 6.32355 6.39011 6.47086 6.55141 6.66386 6.80201 7.04853 7.17237 7.32342 7.50564 7.57448 7.62318 7.80265 7.92023 8.17238 8.24799 8.76257 8.89423 9.11238 9.49398 10.91567 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.007947 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.028287 B = 3522.485719 C = 4251.912813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.469 5.469 3 C 0.054 3.946 4 C -0.120 4.120 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.166 4.166 9 C -0.092 4.092 10 C -0.083 4.083 11 C 0.212 3.788 12 H 0.084 0.916 13 N -0.829 5.829 14 C -0.554 4.554 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.139 3.861 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.157 0.843 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.312 0.688 36 H 0.346 0.654 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 6.903 1.520 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.181 5.181 3 C -0.073 4.073 4 C -0.158 4.158 5 C -0.106 4.106 6 C -0.154 4.154 7 C -0.132 4.132 8 C -0.186 4.186 9 C -0.110 4.110 10 C -0.086 4.086 11 C 0.104 3.896 12 H 0.101 0.899 13 N -0.358 5.358 14 C -0.593 4.593 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.040 3.960 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.173 0.827 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.653 7.527 0.909 11.504 hybrid contribution -1.004 -1.588 1.293 2.281 sum 7.649 5.939 2.202 9.931 Atomic orbital electron populations 1.24168 0.84203 1.05062 1.01597 1.57869 1.09483 1.10414 1.40300 1.22181 0.95223 0.89315 1.00531 1.21728 0.95320 1.00876 0.97831 1.20436 0.98527 0.94999 0.96674 1.19328 0.97759 0.98840 0.99503 1.20666 0.99387 0.95459 0.97640 1.20915 0.97239 0.98406 1.02004 1.21373 0.94847 0.99656 0.95170 1.20346 0.98110 0.93292 0.96870 1.18787 0.88612 0.97056 0.85151 0.89862 1.59574 1.17741 1.47414 1.11103 1.22186 1.03341 1.10170 1.23648 0.91859 1.24986 0.96622 0.97019 0.94922 1.69780 1.14495 1.39121 1.30031 0.86664 0.78292 0.83648 0.79446 1.20271 1.21297 1.20342 1.18591 0.93927 0.94706 0.88822 0.94621 0.94696 0.82665 0.90630 0.94806 0.90705 0.91546 0.91841 0.91591 0.87622 0.87492 0.84653 0.87639 0.83887 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 7.63 60.07 0.46 0.34 16 2 N -0.47 -8.96 4.43 -179.43 -0.80 -9.76 16 3 C 0.05 0.84 5.28 -3.89 -0.02 0.82 16 4 C -0.12 -1.63 6.21 -26.38 -0.16 -1.80 16 5 C -0.07 -0.99 5.82 -27.67 -0.16 -1.15 16 6 C -0.15 -2.72 5.74 -104.38 -0.60 -3.32 16 7 C -0.11 -1.94 9.63 -39.51 -0.38 -2.32 16 8 C -0.17 -3.04 10.05 -39.62 -0.40 -3.44 16 9 C -0.09 -1.93 9.14 -39.71 -0.36 -2.30 16 10 C -0.08 -1.84 5.13 -104.27 -0.54 -2.38 16 11 C 0.21 5.06 1.62 -70.02 -0.11 4.95 16 12 H 0.08 2.12 4.17 -52.29 -0.22 1.90 16 13 N -0.83 -18.87 6.50 -6.65 -0.04 -18.92 16 14 C -0.55 -14.35 8.30 -34.44 -0.29 -14.63 16 15 H 0.06 1.63 4.92 -52.49 -0.26 1.37 16 16 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 17 N -0.90 -23.83 11.92 55.43 0.66 -23.17 16 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.14 2.84 5.66 -83.85 -0.47 2.37 16 23 H 0.04 0.76 6.04 -51.93 -0.31 0.45 16 24 H 0.03 0.61 7.70 -51.93 -0.40 0.21 16 25 H 0.16 3.45 3.53 -63.32 -0.22 3.23 16 26 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 27 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.14 2.94 5.21 -52.49 -0.27 2.66 16 35 H 0.31 7.18 8.98 -39.29 -0.35 6.83 16 36 H 0.35 8.31 7.31 -39.29 -0.29 8.03 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -26.50 280.36 -8.95 -35.45 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -4.84 Total: 17.79 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -3.13 Total: -21.19 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.18 Total: -51.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.50 -8.95 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.588 kcal (2) G-P(sol) polarization free energy of solvation -26.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds