Wall clock time and date at job start Mon Mar 30 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46420 * 110.99937 * 2 1 4 4 C 1.53371 * 108.67363 * 178.98681 * 3 2 1 5 5 C 1.53310 * 107.70613 * 291.56145 * 4 3 2 6 6 C 1.50802 * 109.57242 * 47.75657 * 5 4 3 7 7 C 1.38615 * 118.13079 * 163.82931 * 6 5 4 8 8 C 1.38055 * 120.48355 * 179.38610 * 7 6 5 9 9 C 1.38317 * 119.88869 * 359.97438 * 8 7 6 10 10 C 1.37806 * 119.95410 * 0.13040 * 9 8 7 11 11 C 1.50700 * 119.79261 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46689 * 120.87330 * 11 10 9 13 13 N 1.46894 * 109.47449 * 240.87593 * 11 10 9 14 14 C 1.50701 * 109.46834 * 0.87852 * 11 10 9 15 15 H 1.08000 * 120.00215 * 354.48358 * 14 11 10 16 16 C 1.37888 * 119.99593 * 174.48141 * 14 11 10 17 17 N 1.31514 * 120.00050 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99701 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46721 * 60.00348 * 18 16 14 20 20 H 1.48495 * 109.47137 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47320 * 300.00331 * 18 16 14 22 22 C 1.38371 * 122.00794 * 343.71194 * 6 5 4 23 23 H 1.08996 * 109.46825 * 266.67934 * 1 2 3 24 24 H 1.09000 * 109.47017 * 26.67775 * 1 2 3 25 25 H 1.08994 * 109.47545 * 146.67754 * 1 2 3 26 26 H 1.09000 * 109.61038 * 298.74665 * 3 2 1 27 27 H 1.09003 * 109.60743 * 59.06888 * 3 2 1 28 28 H 1.09002 * 109.76421 * 51.45083 * 4 3 2 29 29 H 1.08999 * 109.77084 * 172.17907 * 4 3 2 30 30 H 1.08996 * 109.94853 * 287.43641 * 5 4 3 31 31 H 1.09008 * 109.01881 * 167.50190 * 5 4 3 32 32 H 1.08001 * 119.76312 * 359.36580 * 7 6 5 33 33 H 1.08001 * 120.05882 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.02337 * 180.15864 * 9 8 7 35 35 H 1.00898 * 111.00200 * 59.99818 * 13 11 10 36 36 H 1.00903 * 111.00224 * 183.95861 * 13 11 10 37 37 H 0.96995 * 119.99974 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 3.5260 1.3048 0.0257 5 6 3.9476 0.7582 1.3946 6 6 3.1352 -0.4698 1.7202 7 6 3.5856 -1.3016 2.7335 8 6 2.8731 -2.4321 3.0803 9 6 1.7006 -2.7392 2.4139 10 6 1.2478 -1.9182 1.4040 11 6 -0.0298 -2.2566 0.6800 12 1 -0.7397 -1.4373 0.7936 13 7 0.2554 -2.4632 -0.7461 14 6 -0.6186 -3.5158 1.2621 15 1 -0.0745 -4.0694 2.0130 16 6 -1.8521 -3.9611 0.8359 17 7 -2.5144 -3.2872 -0.0788 18 14 -2.5816 -5.5222 1.5570 19 1 -2.7459 -5.3601 3.0240 20 1 -3.9051 -5.7828 0.9360 21 1 -1.6736 -6.6651 1.2838 22 6 1.9687 -0.7783 1.0430 23 1 -0.3633 -0.0595 1.0259 24 1 -0.3633 0.9183 -0.4614 25 1 -0.3634 -0.8586 -0.5645 26 1 1.6639 1.8855 -0.9002 27 1 1.6321 1.8976 0.8808 28 1 3.8815 0.6460 -0.7666 29 1 3.9379 2.3043 -0.1134 30 1 3.7858 1.5144 2.1628 31 1 5.0050 0.4955 1.3619 32 1 4.5008 -1.0638 3.2554 33 1 3.2301 -3.0751 3.8712 34 1 1.1401 -3.6217 2.6852 35 1 0.9117 -3.2182 -0.8780 36 1 -0.5943 -2.6280 -1.2647 37 1 -3.3822 -3.6002 -0.3783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:12 Heat of formation + Delta-G solvation = 64.878108 kcal Electronic energy + Delta-G solvation = -18610.940389 eV Core-core repulsion = 15968.073846 eV Total energy + Delta-G solvation = -2642.866543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.64385 -37.66001 -37.37559 -34.60397 -32.81314 -31.21616 -30.57376 -28.10645 -27.36531 -25.35182 -24.00323 -23.37267 -21.42315 -20.36309 -18.30660 -17.60537 -17.00079 -16.66241 -16.23912 -16.06907 -15.19129 -15.05975 -14.91157 -14.52780 -14.32697 -14.15332 -13.58000 -13.37285 -13.17922 -12.94567 -12.84684 -12.70526 -12.40067 -11.97017 -11.86440 -11.82668 -11.49895 -11.18777 -10.88884 -10.43829 -10.24094 -9.25106 -8.99678 -8.23717 -8.05831 -6.25674 0.70918 0.75048 1.38470 1.39738 1.46337 2.39734 2.91997 3.13981 3.24824 3.88788 3.99675 4.14020 4.26602 4.30117 4.43126 4.56499 4.60913 4.65666 4.70183 4.77930 4.84320 4.94336 5.02844 5.07503 5.19265 5.33008 5.36908 5.50370 5.62882 5.68925 5.74995 5.83946 5.96633 6.11694 6.26629 6.50310 6.72072 6.79080 6.97676 7.18110 7.47004 8.89550 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.007947 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.028287 B = 3522.485719 C = 4251.912813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.478 5.478 3 C 0.048 3.952 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.153 4.153 7 C -0.107 4.107 8 C -0.167 4.167 9 C -0.114 4.114 10 C -0.116 4.116 11 C 0.220 3.780 12 H 0.062 0.938 13 N -0.813 5.813 14 C -0.570 4.570 15 H 0.060 0.940 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.276 1.276 22 C 0.122 3.878 23 H 0.012 0.988 24 H 0.054 0.946 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.307 0.693 36 H 0.337 0.663 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 8.070 2.219 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.190 5.190 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.125 4.125 8 C -0.186 4.186 9 C -0.133 4.133 10 C -0.119 4.119 11 C 0.112 3.888 12 H 0.079 0.921 13 N -0.341 5.341 14 C -0.609 4.609 15 H 0.078 0.922 16 C -0.176 4.176 17 N -0.554 5.554 18 Si 0.775 3.225 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.202 1.202 22 C 0.022 3.978 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.150 0.850 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.879 8.702 1.612 14.024 hybrid contribution -1.641 -1.901 1.096 2.740 sum 9.238 6.801 2.708 11.787 Atomic orbital electron populations 1.23814 0.85474 1.04914 0.99806 1.57850 1.08510 1.12488 1.40141 1.22377 0.96873 0.87278 1.01307 1.21733 0.93503 1.02689 0.97175 1.20551 0.98996 0.93570 0.97402 1.19867 0.96957 1.00221 0.98648 1.21118 1.00148 0.94272 0.96990 1.21189 0.96053 0.99281 1.02054 1.21336 0.96414 0.99485 0.96077 1.20313 0.98285 0.95176 0.98122 1.18578 0.89452 0.95369 0.85431 0.92115 1.59633 1.16894 1.46789 1.10750 1.22543 1.03695 1.11060 1.23636 0.92193 1.25631 0.97050 0.99530 0.95388 1.69883 1.14583 1.40173 1.30803 0.85763 0.77509 0.80573 0.78616 1.20223 1.21010 1.20182 1.18788 0.94931 0.94447 0.89676 0.96984 0.92682 0.85151 0.89237 0.94617 0.91877 0.87880 0.90003 0.89273 0.83741 0.84886 0.86459 0.88183 0.84988 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 7.63 127.69 0.97 1.19 16 2 N -0.48 -18.07 4.43 -721.60 -3.20 -21.27 16 3 C 0.05 1.37 5.28 86.52 0.46 1.83 16 4 C -0.11 -2.66 6.21 30.82 0.19 -2.47 16 5 C -0.07 -1.65 5.82 29.98 0.17 -1.48 16 6 C -0.15 -5.14 5.74 -19.71 -0.11 -5.25 16 7 C -0.11 -3.33 9.63 22.32 0.21 -3.12 16 8 C -0.17 -5.81 10.05 22.25 0.22 -5.59 16 9 C -0.11 -4.90 9.14 22.19 0.20 -4.70 16 10 C -0.12 -5.27 5.13 -19.63 -0.10 -5.37 16 11 C 0.22 10.99 1.62 43.42 0.07 11.06 16 12 H 0.06 3.29 4.17 -2.73 -0.01 3.28 16 13 N -0.81 -38.62 6.50 -174.96 -1.14 -39.76 16 14 C -0.57 -30.65 8.30 25.60 0.21 -30.44 16 15 H 0.06 3.21 4.92 -2.91 -0.01 3.20 16 16 C 0.02 1.29 5.39 84.66 0.46 1.75 16 17 N -0.91 -50.15 11.92 21.45 0.26 -49.90 16 18 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.12 4.90 5.66 38.30 0.22 5.12 16 23 H 0.01 0.53 6.04 -2.39 -0.01 0.52 16 24 H 0.05 1.95 7.70 -2.39 -0.02 1.93 16 25 H 0.13 6.06 3.53 -24.88 -0.09 5.97 16 26 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 27 H 0.04 1.02 8.11 -2.39 -0.02 1.00 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 34 H 0.12 5.31 5.21 -2.91 -0.02 5.30 16 35 H 0.31 14.74 8.98 -89.70 -0.81 13.93 16 36 H 0.34 16.93 7.31 -89.69 -0.66 16.28 16 37 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -58.57 280.36 0.69 -57.88 By element: Atomic # 1 Polarization: 45.78 SS G_CDS: -0.44 Total: 45.34 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.18 Total: -37.46 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.08 Total: -110.93 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -58.57 0.69 -57.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.760 kcal (2) G-P(sol) polarization free energy of solvation -58.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds