Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46426 * 111.00097 * 2 1 4 4 C 1.53380 * 108.65332 * 287.85190 * 3 2 1 5 5 C 1.53041 * 107.97898 * 291.75059 * 4 3 2 6 6 C 1.50928 * 109.59831 * 47.29406 * 5 4 3 7 7 C 1.38616 * 118.10740 * 164.69080 * 6 5 4 8 8 C 1.50696 * 119.75384 * 359.34690 * 7 6 5 9 9 H 1.09001 * 109.47796 * 325.02273 * 8 7 6 10 10 N 1.46902 * 109.47082 * 205.02050 * 8 7 6 11 11 C 1.50700 * 109.47263 * 85.02927 * 8 7 6 12 12 H 1.08004 * 120.00060 * 359.97438 * 11 8 7 13 13 C 1.37881 * 120.00425 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99429 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00211 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47423 * 60.00026 * 15 13 11 17 17 H 1.48505 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47208 * 299.99864 * 15 13 11 19 19 C 1.38048 * 120.48682 * 179.36797 * 7 6 5 20 20 C 1.38319 * 119.88872 * 0.02562 * 19 7 6 21 21 C 1.37807 * 119.95146 * 0.13208 * 20 19 7 22 22 C 1.38374 * 122.02887 * 344.31070 * 6 5 4 23 23 H 1.09000 * 109.46691 * 63.96049 * 1 2 3 24 24 H 1.08998 * 109.47033 * 183.95639 * 1 2 3 25 25 H 1.08998 * 109.47391 * 303.96167 * 1 2 3 26 26 H 1.09005 * 109.60747 * 168.10527 * 3 2 1 27 27 H 1.08993 * 109.74784 * 47.68877 * 3 2 1 28 28 H 1.09002 * 109.76759 * 51.38684 * 4 3 2 29 29 H 1.09004 * 109.76865 * 172.11390 * 4 3 2 30 30 H 1.09007 * 109.44110 * 167.39060 * 5 4 3 31 31 H 1.09001 * 109.44081 * 287.27254 * 5 4 3 32 32 H 1.00902 * 111.00043 * 300.00433 * 10 8 7 33 33 H 1.00907 * 110.99731 * 63.95526 * 10 8 7 34 34 H 0.97001 * 119.99790 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.05918 * 180.02562 * 19 7 6 36 36 H 1.08003 * 120.02507 * 180.11379 * 20 19 7 37 37 H 1.08002 * 119.78786 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 1.7537 1.9846 -1.3833 5 6 2.6486 1.2555 -2.3880 6 6 2.5240 -0.2353 -2.1882 7 6 2.9929 -1.0700 -3.1906 8 6 3.5914 -0.4759 -4.4395 9 1 3.0667 0.4458 -4.6910 10 7 3.4610 -1.4316 -5.5475 11 6 5.0494 -0.1758 -4.2043 12 1 5.4977 -0.3932 -3.2460 13 6 5.8111 0.3762 -5.2123 14 7 5.2653 0.6404 -6.3793 15 14 7.6181 0.7488 -4.9204 16 1 8.3332 -0.5065 -4.5769 17 1 8.2082 1.3330 -6.1516 18 1 7.7496 1.7156 -3.8010 19 6 2.9154 -2.4415 -3.0534 20 6 2.3657 -2.9897 -1.9086 21 6 1.8944 -2.1661 -0.9092 22 6 1.9687 -0.7784 -1.0430 23 1 -0.3633 0.4511 -0.9234 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5741 0.8523 26 1 3.0629 1.3484 0.2116 27 1 1.4811 1.9583 0.7586 28 1 0.7077 1.8628 -1.6649 29 1 2.0089 3.0442 -1.3633 30 1 2.3416 1.5137 -3.4015 31 1 3.6851 1.5565 -2.2358 32 1 3.9394 -2.2951 -5.3385 33 1 2.4906 -1.6000 -5.7674 34 1 5.8012 1.0284 -7.0886 35 1 3.2833 -3.0854 -3.8385 36 1 2.3056 -4.0623 -1.7981 37 1 1.4653 -2.5970 -0.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = 32.369937 kcal Electronic energy + Delta-G solvation = -18317.777012 eV Core-core repulsion = 15673.500810 eV Total energy + Delta-G solvation = -2644.276203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19018 -37.02832 -34.55499 -32.93476 -31.45708 -29.95189 -28.53147 -26.76763 -25.95496 -23.78514 -22.77221 -22.40195 -19.62176 -18.86344 -16.44549 -16.23802 -15.81579 -15.21400 -14.58446 -14.31815 -14.19743 -13.82373 -13.44023 -13.27839 -12.77236 -12.48675 -12.35321 -12.10228 -11.88088 -11.71478 -11.21602 -11.17594 -10.89613 -10.65083 -10.60520 -10.44576 -10.10357 -9.69113 -9.31705 -8.78459 -8.41871 -7.79148 -7.43409 -7.06425 -5.87297 -4.01832 1.95225 2.09351 3.34840 3.39654 3.42862 4.05670 4.36129 4.53422 5.07766 5.15608 5.20302 5.36324 5.39602 5.52068 5.54624 5.61567 5.75105 5.83960 5.87555 5.96676 6.03583 6.10899 6.17747 6.29987 6.34982 6.59224 6.67377 6.80556 6.83288 7.06410 7.15394 7.29740 7.41980 7.59761 7.87662 7.91383 8.20824 8.65223 9.01344 9.15874 9.66406 11.16809 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.007783 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.157257 B = 3596.685534 C = 4108.741890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.503 5.503 3 C 0.057 3.943 4 C -0.158 4.158 5 C -0.072 4.072 6 C -0.110 4.110 7 C -0.059 4.059 8 C 0.253 3.747 9 H 0.051 0.949 10 N -0.812 5.812 11 C -0.525 4.525 12 H 0.051 0.949 13 C 0.084 3.916 14 N -0.848 5.848 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.144 4.144 20 C -0.114 4.114 21 C -0.146 4.146 22 C 0.098 3.902 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.318 0.682 33 H 0.297 0.703 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -0.857 9.955 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.220 5.220 3 C -0.070 4.070 4 C -0.197 4.197 5 C -0.109 4.109 6 C -0.113 4.113 7 C -0.062 4.062 8 C 0.143 3.857 9 H 0.068 0.932 10 N -0.338 5.338 11 C -0.564 4.564 12 H 0.070 0.930 13 C -0.122 4.122 14 N -0.482 5.482 15 Si 0.710 3.290 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.163 4.163 20 C -0.132 4.132 21 C -0.166 4.166 22 C 0.002 3.998 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.201 -0.410 9.765 12.758 hybrid contribution 0.410 -0.172 0.200 0.488 sum -7.791 -0.582 9.965 12.662 Atomic orbital electron populations 1.22418 0.86235 1.02311 1.00558 1.58748 1.07610 1.13045 1.42551 1.22184 1.01218 0.87239 0.96387 1.22240 1.00240 1.00335 0.96914 1.20488 1.00616 0.90531 0.99292 1.19817 1.02511 0.96005 0.92981 1.21615 0.92719 0.93105 0.98731 1.18244 0.95569 0.91264 0.80593 0.93182 1.59206 1.14322 1.15374 1.44873 1.20713 0.93384 1.43750 0.98562 0.93028 1.24930 0.97506 0.94756 0.95031 1.70092 1.35314 1.40242 1.02582 0.86846 0.86141 0.78614 0.77375 1.20359 1.21348 1.20381 1.20907 1.01987 0.95170 0.98240 1.20824 0.99475 0.98694 0.94256 1.20710 1.04818 0.91788 0.99282 1.18416 1.00123 0.92235 0.88992 0.94951 0.91335 0.91423 0.90190 0.90715 0.92099 0.91068 0.90128 0.89665 0.86908 0.89233 0.93412 0.86706 0.87045 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.20 60.06 0.55 0.93 16 2 N -0.50 -7.63 4.74 -179.14 -0.85 -8.47 16 3 C 0.06 0.79 5.81 -3.89 -0.02 0.77 16 4 C -0.16 -2.29 6.03 -26.51 -0.16 -2.45 16 5 C -0.07 -1.34 5.02 -27.75 -0.14 -1.48 16 6 C -0.11 -2.17 5.75 -104.32 -0.60 -2.77 16 7 C -0.06 -1.25 4.99 -104.55 -0.52 -1.77 16 8 C 0.25 6.14 2.30 -70.02 -0.16 5.98 16 9 H 0.05 1.33 6.24 -51.93 -0.32 1.01 16 10 N -0.81 -18.92 8.13 -6.65 -0.05 -18.98 16 11 C -0.53 -14.20 8.63 -34.44 -0.30 -14.50 16 12 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 13 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 14 N -0.85 -24.39 12.77 55.43 0.71 -23.68 16 15 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.14 -2.78 9.26 -39.62 -0.37 -3.15 16 20 C -0.11 -1.93 10.04 -39.71 -0.40 -2.33 16 21 C -0.15 -2.47 9.32 -39.23 -0.37 -2.83 16 22 C 0.10 1.74 5.12 -83.85 -0.43 1.31 16 23 H 0.03 0.41 6.65 -51.93 -0.35 0.07 16 24 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 25 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 26 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 27 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 28 H 0.06 0.86 6.50 -51.93 -0.34 0.52 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.59 6.49 -51.92 -0.34 1.25 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.32 7.11 7.18 -39.29 -0.28 6.83 16 33 H 0.30 6.24 9.06 -39.29 -0.36 5.89 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.12 2.12 6.26 -52.49 -0.33 1.79 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 292.03 15.07 4.40 4.40 Total: -1.00 -29.38 292.03 -9.02 -38.39 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.20 Total: 12.11 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.00 Total: -20.05 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.20 Total: -51.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.38 -9.02 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.762 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds