Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46426 * 111.00097 * 2 1 4 4 C 1.53380 * 108.65332 * 287.85190 * 3 2 1 5 5 C 1.53041 * 107.97898 * 291.75059 * 4 3 2 6 6 C 1.50928 * 109.59831 * 47.29406 * 5 4 3 7 7 C 1.38616 * 118.10740 * 164.69080 * 6 5 4 8 8 C 1.50696 * 119.75384 * 359.34690 * 7 6 5 9 9 H 1.09001 * 109.47796 * 325.02273 * 8 7 6 10 10 N 1.46902 * 109.47082 * 205.02050 * 8 7 6 11 11 C 1.50700 * 109.47263 * 85.02927 * 8 7 6 12 12 H 1.08004 * 120.00060 * 359.97438 * 11 8 7 13 13 C 1.37881 * 120.00425 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99429 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00211 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47423 * 60.00026 * 15 13 11 17 17 H 1.48505 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47208 * 299.99864 * 15 13 11 19 19 C 1.38048 * 120.48682 * 179.36797 * 7 6 5 20 20 C 1.38319 * 119.88872 * 0.02562 * 19 7 6 21 21 C 1.37807 * 119.95146 * 0.13208 * 20 19 7 22 22 C 1.38374 * 122.02887 * 344.31070 * 6 5 4 23 23 H 1.09000 * 109.46691 * 63.96049 * 1 2 3 24 24 H 1.08998 * 109.47033 * 183.95639 * 1 2 3 25 25 H 1.08998 * 109.47391 * 303.96167 * 1 2 3 26 26 H 1.09005 * 109.60747 * 168.10527 * 3 2 1 27 27 H 1.08993 * 109.74784 * 47.68877 * 3 2 1 28 28 H 1.09002 * 109.76759 * 51.38684 * 4 3 2 29 29 H 1.09004 * 109.76865 * 172.11390 * 4 3 2 30 30 H 1.09007 * 109.44110 * 167.39060 * 5 4 3 31 31 H 1.09001 * 109.44081 * 287.27254 * 5 4 3 32 32 H 1.00902 * 111.00043 * 300.00433 * 10 8 7 33 33 H 1.00907 * 110.99731 * 63.95526 * 10 8 7 34 34 H 0.97001 * 119.99790 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.05918 * 180.02562 * 19 7 6 36 36 H 1.08003 * 120.02507 * 180.11379 * 20 19 7 37 37 H 1.08002 * 119.78786 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 1.7537 1.9846 -1.3833 5 6 2.6486 1.2555 -2.3880 6 6 2.5240 -0.2353 -2.1882 7 6 2.9929 -1.0700 -3.1906 8 6 3.5914 -0.4759 -4.4395 9 1 3.0667 0.4458 -4.6910 10 7 3.4610 -1.4316 -5.5475 11 6 5.0494 -0.1758 -4.2043 12 1 5.4977 -0.3932 -3.2460 13 6 5.8111 0.3762 -5.2123 14 7 5.2653 0.6404 -6.3793 15 14 7.6181 0.7488 -4.9204 16 1 8.3332 -0.5065 -4.5769 17 1 8.2082 1.3330 -6.1516 18 1 7.7496 1.7156 -3.8010 19 6 2.9154 -2.4415 -3.0534 20 6 2.3657 -2.9897 -1.9086 21 6 1.8944 -2.1661 -0.9092 22 6 1.9687 -0.7784 -1.0430 23 1 -0.3633 0.4511 -0.9234 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5741 0.8523 26 1 3.0629 1.3484 0.2116 27 1 1.4811 1.9583 0.7586 28 1 0.7077 1.8628 -1.6649 29 1 2.0089 3.0442 -1.3633 30 1 2.3416 1.5137 -3.4015 31 1 3.6851 1.5565 -2.2358 32 1 3.9394 -2.2951 -5.3385 33 1 2.4906 -1.6000 -5.7674 34 1 5.8012 1.0284 -7.0886 35 1 3.2833 -3.0854 -3.8385 36 1 2.3056 -4.0623 -1.7981 37 1 1.4653 -2.5970 -0.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = 13.218890 kcal Electronic energy + Delta-G solvation = -18318.607464 eV Core-core repulsion = 15673.500810 eV Total energy + Delta-G solvation = -2645.106654 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52995 -38.44218 -36.20319 -34.46423 -33.38919 -31.28244 -30.03114 -28.04664 -27.80141 -25.14893 -24.35662 -23.83160 -21.17347 -20.21081 -18.50820 -17.60617 -17.16189 -16.56668 -16.52252 -16.00643 -15.43751 -15.22729 -14.91564 -14.73652 -14.24512 -14.10828 -13.79154 -13.58788 -13.13808 -12.96895 -12.80250 -12.77689 -12.66380 -12.34617 -12.19745 -11.87107 -11.48473 -11.38074 -11.28503 -10.55911 -10.13205 -9.33197 -8.89685 -8.75896 -7.98449 -6.19341 0.53724 0.63395 1.40648 1.41535 1.48943 2.44506 2.86402 3.00621 3.24426 3.89807 3.91976 3.97500 4.14076 4.26931 4.39774 4.40564 4.48241 4.57689 4.59713 4.65980 4.77256 4.83107 4.87417 4.93883 5.03531 5.17033 5.24291 5.34297 5.39382 5.50094 5.66310 5.75010 5.90017 5.96146 6.14965 6.21890 6.52883 6.66767 7.09536 7.25568 7.52145 9.04230 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.007783 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.157257 B = 3596.685534 C = 4108.741890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.506 5.506 3 C 0.057 3.943 4 C -0.148 4.148 5 C -0.069 4.069 6 C -0.133 4.133 7 C -0.086 4.086 8 C 0.262 3.738 9 H 0.017 0.983 10 N -0.821 5.821 11 C -0.532 4.532 12 H 0.037 0.963 13 C 0.038 3.962 14 N -0.879 5.879 15 Si 0.942 3.058 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.158 4.158 20 C -0.106 4.106 21 C -0.143 4.143 22 C 0.100 3.900 23 H 0.026 0.974 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.323 0.677 33 H 0.310 0.690 34 H 0.255 0.745 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 -1.444 12.314 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.222 5.222 3 C -0.070 4.070 4 C -0.187 4.187 5 C -0.107 4.107 6 C -0.136 4.136 7 C -0.089 4.089 8 C 0.152 3.848 9 H 0.035 0.965 10 N -0.349 5.349 11 C -0.571 4.571 12 H 0.056 0.944 13 C -0.165 4.165 14 N -0.515 5.515 15 Si 0.768 3.232 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.177 4.177 20 C -0.125 4.125 21 C -0.163 4.163 22 C 0.004 3.996 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.121 -0.996 12.140 15.217 hybrid contribution 0.622 -0.018 -0.463 0.776 sum -8.498 -1.014 11.676 14.477 Atomic orbital electron populations 1.22535 0.84114 1.03396 1.01529 1.58841 1.09294 1.13360 1.40739 1.22266 1.01001 0.87129 0.96605 1.22184 0.99492 1.00832 0.96166 1.20372 0.99929 0.91066 0.99287 1.19983 1.03630 0.96188 0.93798 1.21360 0.94852 0.94397 0.98253 1.17845 0.94005 0.90492 0.82474 0.96549 1.59031 1.15389 1.15444 1.45030 1.20927 0.95041 1.43350 0.97799 0.94448 1.25606 1.01333 0.94738 0.94855 1.70210 1.36647 1.41370 1.03292 0.85902 0.81526 0.78419 0.77385 1.20106 1.20829 1.19903 1.21012 1.02823 0.94274 0.99555 1.21164 0.97804 1.00545 0.92965 1.21087 1.03819 0.91364 1.00016 1.18639 0.99075 0.93278 0.88645 0.95577 0.90605 0.88514 0.91587 0.87093 0.91373 0.89325 0.92715 0.92375 0.86396 0.87902 0.93559 0.86610 0.83628 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.20 127.69 1.17 1.80 16 2 N -0.51 -13.88 4.74 -720.66 -3.42 -17.30 16 3 C 0.06 1.45 5.81 86.52 0.50 1.95 16 4 C -0.15 -4.13 6.03 30.74 0.19 -3.95 16 5 C -0.07 -2.67 5.02 29.93 0.15 -2.52 16 6 C -0.13 -5.30 5.75 -19.67 -0.11 -5.42 16 7 C -0.09 -3.74 4.99 -19.82 -0.10 -3.84 16 8 C 0.26 13.31 2.30 43.42 0.10 13.41 16 9 H 0.02 0.95 6.24 -2.39 -0.01 0.94 16 10 N -0.82 -39.62 8.13 -174.95 -1.42 -41.04 16 11 C -0.53 -29.87 8.63 25.60 0.22 -29.65 16 12 H 0.04 2.15 7.74 -2.91 -0.02 2.13 16 13 C 0.04 2.16 5.39 84.66 0.46 2.62 16 14 N -0.88 -52.07 12.77 21.45 0.27 -51.80 16 15 Si 0.94 44.60 29.54 68.60 2.03 46.62 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.16 -6.03 9.26 22.24 0.21 -5.83 16 20 C -0.11 -3.36 10.04 22.19 0.22 -3.13 16 21 C -0.14 -4.41 9.32 22.50 0.21 -4.20 16 22 C 0.10 3.37 5.12 38.30 0.20 3.57 16 23 H 0.03 0.59 6.65 -2.39 -0.02 0.57 16 24 H 0.08 1.50 7.73 -2.39 -0.02 1.48 16 25 H 0.10 1.50 8.03 -2.39 -0.02 1.48 16 26 H 0.07 1.86 8.11 -2.38 -0.02 1.84 16 27 H 0.11 2.05 7.97 -2.39 -0.02 2.03 16 28 H 0.07 1.82 6.50 -2.39 -0.02 1.80 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.05 2.33 6.49 -2.38 -0.02 2.31 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.32 14.81 7.18 -89.69 -0.64 14.17 16 33 H 0.31 13.44 9.06 -89.69 -0.81 12.63 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.12 4.28 6.26 -2.91 -0.02 4.26 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -64.70 292.03 0.50 -64.20 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.37 Total: 34.51 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.41 Total: -35.19 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.57 Total: -110.14 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.70 0.50 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.421 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds