Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46430 * 110.99962 * 2 1 4 4 C 1.53389 * 108.64954 * 287.83681 * 3 2 1 5 5 C 1.53042 * 107.92639 * 291.75524 * 4 3 2 6 6 C 1.50799 * 109.66400 * 47.29607 * 5 4 3 7 7 C 1.38611 * 118.12588 * 164.60331 * 6 5 4 8 8 C 1.50701 * 119.75434 * 359.69307 * 7 6 5 9 9 H 1.08996 * 109.47532 * 39.99398 * 8 7 6 10 10 N 1.46900 * 109.47152 * 159.99835 * 8 7 6 11 11 C 1.50703 * 109.46789 * 279.99570 * 8 7 6 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38050 * 120.48936 * 179.97438 * 7 6 5 20 20 C 1.38314 * 119.88521 * 359.35222 * 19 7 6 21 21 C 1.37803 * 119.95373 * 0.66812 * 20 19 7 22 22 C 1.38373 * 122.01159 * 344.37302 * 6 5 4 23 23 H 1.08996 * 109.47160 * 56.04427 * 1 2 3 24 24 H 1.08994 * 109.46985 * 176.05084 * 1 2 3 25 25 H 1.09003 * 109.47063 * 296.04316 * 1 2 3 26 26 H 1.08997 * 109.60582 * 168.08580 * 3 2 1 27 27 H 1.09003 * 109.74590 * 47.66276 * 3 2 1 28 28 H 1.08996 * 109.76348 * 172.14864 * 4 3 2 29 29 H 1.08998 * 109.81139 * 51.39052 * 4 3 2 30 30 H 1.08998 * 109.44034 * 287.23328 * 5 4 3 31 31 H 1.09000 * 109.43847 * 167.35539 * 5 4 3 32 32 H 1.00895 * 110.99794 * 296.04131 * 10 8 7 33 33 H 1.00897 * 111.00054 * 59.99627 * 10 8 7 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.08000 * 120.05736 * 179.60630 * 19 7 6 36 36 H 1.08004 * 120.02694 * 180.38896 * 20 19 7 37 37 H 1.08006 * 119.79550 * 179.79014 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7540 1.9845 -1.3835 5 6 2.6496 1.2543 -2.3869 6 6 2.5257 -0.2353 -2.1875 7 6 2.9941 -1.0700 -3.1901 8 6 3.5987 -0.4760 -4.4361 9 1 4.2143 0.3825 -4.1677 10 7 4.4305 -1.4848 -5.1057 11 6 2.4987 -0.0339 -5.3666 12 1 1.4652 -0.1692 -5.0837 13 6 2.8117 0.5432 -6.5790 14 7 4.0702 0.7084 -6.9233 15 14 1.4482 1.0917 -7.7320 16 1 1.0872 -0.0271 -8.6393 17 1 1.9155 2.2497 -8.5358 18 1 0.2579 1.4886 -6.9377 19 6 2.9056 -2.4413 -3.0581 20 6 2.3581 -2.9895 -1.9123 21 6 1.8898 -2.1660 -0.9115 22 6 1.9686 -0.7783 -1.0431 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 -0.3633 0.4512 0.9233 26 1 3.0628 1.3485 0.2120 27 1 1.4807 1.9585 0.7584 28 1 2.0098 3.0438 -1.3637 29 1 0.7083 1.8630 -1.6660 30 1 3.6859 1.5558 -2.2346 31 1 2.3430 1.5113 -3.4008 32 1 5.2131 -1.7503 -4.5267 33 1 3.8824 -2.2913 -5.3648 34 1 4.7781 0.4239 -6.3244 35 1 3.2669 -3.0850 -3.8464 36 1 2.2934 -4.0621 -1.8040 37 1 1.4597 -2.5968 -0.0194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = 25.735178 kcal Electronic energy + Delta-G solvation = -18405.227932 eV Core-core repulsion = 15760.664024 eV Total energy + Delta-G solvation = -2644.563907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25315 -37.14390 -34.80595 -33.04699 -31.34623 -30.01235 -28.62554 -26.78541 -25.61345 -23.80983 -22.76632 -22.36332 -19.85070 -18.95241 -16.90881 -16.20004 -15.89674 -15.23968 -14.60707 -14.27262 -14.18542 -13.76786 -13.52592 -13.30805 -13.09894 -12.54960 -12.38416 -12.04703 -11.84023 -11.72593 -11.45027 -11.03858 -10.87296 -10.74158 -10.64309 -10.20320 -10.10213 -9.95173 -9.01210 -8.73193 -8.34652 -7.77967 -7.62915 -7.36663 -6.18798 -4.02215 1.88672 2.02118 3.46054 3.48035 3.63740 4.01031 4.33144 4.59940 5.04477 5.14379 5.18722 5.37569 5.42864 5.49425 5.51170 5.57684 5.69816 5.80439 5.85682 5.90916 5.96799 6.05409 6.11266 6.13719 6.33178 6.49551 6.64098 6.74522 6.80191 6.94995 7.05062 7.21905 7.36743 7.39388 7.81417 7.99150 8.30994 8.65503 8.76166 9.04342 9.80780 11.20296 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.008246 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.783668 B = 3394.649802 C = 3951.292594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.503 5.503 3 C 0.057 3.943 4 C -0.157 4.157 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.052 4.052 8 C 0.237 3.763 9 H 0.041 0.959 10 N -0.832 5.832 11 C -0.602 4.602 12 H 0.045 0.955 13 C 0.039 3.961 14 N -0.890 5.890 15 Si 1.064 2.936 16 H -0.289 1.289 17 H -0.285 1.285 18 H -0.291 1.291 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.146 4.146 22 C 0.098 3.902 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.302 0.698 33 H 0.327 0.673 34 H 0.290 0.710 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -1.298 12.349 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.219 5.219 3 C -0.071 4.071 4 C -0.195 4.195 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.055 4.055 8 C 0.128 3.872 9 H 0.059 0.941 10 N -0.360 5.360 11 C -0.641 4.641 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.524 5.524 15 Si 0.893 3.107 16 H -0.216 1.216 17 H -0.211 1.211 18 H -0.218 1.218 19 C -0.167 4.167 20 C -0.131 4.131 21 C -0.166 4.166 22 C 0.003 3.997 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.712 -0.209 10.777 11.764 hybrid contribution -0.296 -1.183 1.648 2.050 sum -5.008 -1.392 12.424 13.468 Atomic orbital electron populations 1.22453 0.86028 1.02340 1.00893 1.58779 1.07806 1.13005 1.42343 1.22186 1.00906 0.87378 0.96600 1.22204 1.00700 1.00160 0.96473 1.20590 0.99216 0.90486 1.01605 1.19761 1.02637 0.96054 0.92564 1.21338 0.94728 0.92999 0.96472 1.18372 0.92100 0.90253 0.86457 0.94145 1.59430 1.12514 1.16547 1.47483 1.21603 0.91599 1.46016 1.04839 0.93695 1.25590 1.00646 0.94070 0.96835 1.70521 1.00025 1.42028 1.39851 0.83645 0.74570 0.76715 0.75784 1.21618 1.21115 1.21781 1.20889 1.02852 0.95071 0.97838 1.20810 0.99413 0.98739 0.94167 1.20730 1.04619 0.91787 0.99433 1.18438 0.99935 0.92263 0.89074 0.94607 0.91294 0.91376 0.90472 0.90647 0.91070 0.91691 0.91523 0.87674 0.88726 0.85973 0.89705 0.86812 0.86959 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.37 60.07 0.56 0.94 16 2 N -0.50 -7.69 4.74 -179.12 -0.85 -8.54 16 3 C 0.06 0.78 5.81 -3.88 -0.02 0.76 16 4 C -0.16 -2.35 6.03 -26.51 -0.16 -2.51 16 5 C -0.08 -1.54 4.64 -27.81 -0.13 -1.67 16 6 C -0.11 -2.13 5.74 -104.39 -0.60 -2.73 16 7 C -0.05 -1.12 5.02 -104.55 -0.52 -1.65 16 8 C 0.24 5.72 1.84 -70.01 -0.13 5.59 16 9 H 0.04 1.06 7.14 -51.93 -0.37 0.69 16 10 N -0.83 -18.92 7.27 -6.65 -0.05 -18.97 16 11 C -0.60 -16.29 7.37 -34.44 -0.25 -16.54 16 12 H 0.04 1.26 7.74 -52.48 -0.41 0.86 16 13 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 14 N -0.89 -26.41 13.51 55.43 0.75 -25.66 16 15 Si 1.06 25.10 29.90 -169.99 -5.08 20.02 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 C -0.15 -2.85 9.24 -39.62 -0.37 -3.22 16 20 C -0.11 -1.91 10.03 -39.71 -0.40 -2.31 16 21 C -0.15 -2.47 9.21 -39.23 -0.36 -2.83 16 22 C 0.10 1.76 5.12 -83.85 -0.43 1.33 16 23 H 0.04 0.49 6.38 -51.93 -0.33 0.16 16 24 H 0.07 0.88 7.56 -51.93 -0.39 0.49 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.09 8.11 -51.93 -0.42 0.66 16 27 H 0.08 0.85 8.05 -51.93 -0.42 0.44 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.01 6.38 -51.93 -0.33 0.67 16 30 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.11 2.29 6.36 -51.93 -0.33 1.96 16 32 H 0.30 6.12 9.06 -39.29 -0.36 5.76 16 33 H 0.33 7.22 7.25 -39.29 -0.29 6.93 16 34 H 0.29 8.62 6.39 -40.82 -0.26 8.36 16 35 H 0.11 2.09 6.22 -52.49 -0.33 1.76 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -29.76 288.69 -8.93 -38.69 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.14 Total: 13.97 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -2.91 Total: -23.86 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.15 Total: -53.17 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.76 -8.93 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.421 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds