Wall clock time and date at job start Mon Mar 30 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46430 * 110.99962 * 2 1 4 4 C 1.53389 * 108.64954 * 287.83681 * 3 2 1 5 5 C 1.53042 * 107.92639 * 291.75524 * 4 3 2 6 6 C 1.50799 * 109.66400 * 47.29607 * 5 4 3 7 7 C 1.38611 * 118.12588 * 164.60331 * 6 5 4 8 8 C 1.50701 * 119.75434 * 359.69307 * 7 6 5 9 9 H 1.08996 * 109.47532 * 39.99398 * 8 7 6 10 10 N 1.46900 * 109.47152 * 159.99835 * 8 7 6 11 11 C 1.50703 * 109.46789 * 279.99570 * 8 7 6 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.38050 * 120.48936 * 179.97438 * 7 6 5 20 20 C 1.38314 * 119.88521 * 359.35222 * 19 7 6 21 21 C 1.37803 * 119.95373 * 0.66812 * 20 19 7 22 22 C 1.38373 * 122.01159 * 344.37302 * 6 5 4 23 23 H 1.08996 * 109.47160 * 56.04427 * 1 2 3 24 24 H 1.08994 * 109.46985 * 176.05084 * 1 2 3 25 25 H 1.09003 * 109.47063 * 296.04316 * 1 2 3 26 26 H 1.08997 * 109.60582 * 168.08580 * 3 2 1 27 27 H 1.09003 * 109.74590 * 47.66276 * 3 2 1 28 28 H 1.08996 * 109.76348 * 172.14864 * 4 3 2 29 29 H 1.08998 * 109.81139 * 51.39052 * 4 3 2 30 30 H 1.08998 * 109.44034 * 287.23328 * 5 4 3 31 31 H 1.09000 * 109.43847 * 167.35539 * 5 4 3 32 32 H 1.00895 * 110.99794 * 296.04131 * 10 8 7 33 33 H 1.00897 * 111.00054 * 59.99627 * 10 8 7 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.08000 * 120.05736 * 179.60630 * 19 7 6 36 36 H 1.08004 * 120.02694 * 180.38896 * 20 19 7 37 37 H 1.08006 * 119.79550 * 179.79014 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7540 1.9845 -1.3835 5 6 2.6496 1.2543 -2.3869 6 6 2.5257 -0.2353 -2.1875 7 6 2.9941 -1.0700 -3.1901 8 6 3.5987 -0.4760 -4.4361 9 1 4.2143 0.3825 -4.1677 10 7 4.4305 -1.4848 -5.1057 11 6 2.4987 -0.0339 -5.3666 12 1 1.4652 -0.1692 -5.0837 13 6 2.8117 0.5432 -6.5790 14 7 4.0702 0.7084 -6.9233 15 14 1.4482 1.0917 -7.7320 16 1 1.0872 -0.0271 -8.6393 17 1 1.9155 2.2497 -8.5358 18 1 0.2579 1.4886 -6.9377 19 6 2.9056 -2.4413 -3.0581 20 6 2.3581 -2.9895 -1.9123 21 6 1.8898 -2.1660 -0.9115 22 6 1.9686 -0.7783 -1.0431 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 -0.3633 0.4512 0.9233 26 1 3.0628 1.3485 0.2120 27 1 1.4807 1.9585 0.7584 28 1 2.0098 3.0438 -1.3637 29 1 0.7083 1.8630 -1.6660 30 1 3.6859 1.5558 -2.2346 31 1 2.3430 1.5113 -3.4008 32 1 5.2131 -1.7503 -4.5267 33 1 3.8824 -2.2913 -5.3648 34 1 4.7781 0.4239 -6.3244 35 1 3.2669 -3.0850 -3.8464 36 1 2.2934 -4.0621 -1.8040 37 1 1.4597 -2.5968 -0.0194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:16 Heat of formation + Delta-G solvation = 6.289002 kcal Electronic energy + Delta-G solvation = -18406.071181 eV Core-core repulsion = 15760.664024 eV Total energy + Delta-G solvation = -2645.407157 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61155 -38.59118 -36.48143 -34.54596 -33.28984 -31.35546 -30.13686 -27.98307 -27.54337 -25.19107 -24.36779 -23.87708 -21.44057 -20.29244 -18.88509 -17.66607 -17.25580 -16.59974 -16.37481 -15.79995 -15.56302 -15.38480 -15.13691 -14.71742 -14.54546 -14.07850 -13.76571 -13.67358 -13.29060 -12.89756 -12.86312 -12.73794 -12.54659 -12.34069 -12.08468 -11.94978 -11.60229 -11.46632 -10.88040 -10.50871 -10.15286 -9.44173 -9.32104 -8.79241 -8.38017 -6.23729 0.46205 0.55418 1.52170 1.59897 1.77011 2.58887 2.77839 2.96912 3.30112 3.84180 3.86649 3.93670 4.08536 4.17626 4.20317 4.32254 4.38908 4.50256 4.54490 4.63523 4.70437 4.74231 4.80263 4.89036 4.96623 5.07210 5.15827 5.24220 5.30867 5.43128 5.60705 5.77406 5.83066 5.98426 6.08818 6.24914 6.45952 6.68395 6.76334 7.02496 7.65596 8.97122 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.008246 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.783668 B = 3394.649802 C = 3951.292594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.503 5.503 3 C 0.059 3.941 4 C -0.148 4.148 5 C -0.079 4.079 6 C -0.130 4.130 7 C -0.082 4.082 8 C 0.246 3.754 9 H 0.008 0.992 10 N -0.838 5.838 11 C -0.599 4.599 12 H 0.028 0.972 13 C -0.009 4.009 14 N -0.919 5.919 15 Si 1.107 2.893 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.279 1.279 19 C -0.160 4.160 20 C -0.105 4.105 21 C -0.142 4.142 22 C 0.099 3.901 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.317 0.683 33 H 0.330 0.670 34 H 0.278 0.722 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -1.997 14.494 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.219 5.219 3 C -0.069 4.069 4 C -0.187 4.187 5 C -0.116 4.116 6 C -0.134 4.134 7 C -0.085 4.085 8 C 0.136 3.864 9 H 0.026 0.974 10 N -0.367 5.367 11 C -0.638 4.638 12 H 0.047 0.953 13 C -0.213 4.213 14 N -0.554 5.554 15 Si 0.931 3.069 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.204 1.204 19 C -0.179 4.179 20 C -0.124 4.124 21 C -0.162 4.162 22 C 0.003 3.997 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.166 0.834 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.410 -0.915 12.944 14.473 hybrid contribution 0.230 -1.005 1.105 1.511 sum -6.180 -1.920 14.049 15.468 Atomic orbital electron populations 1.22563 0.84334 1.02826 1.02068 1.58892 1.09112 1.13442 1.40498 1.22276 1.01244 0.87021 0.96324 1.22161 0.99371 1.00907 0.96252 1.20463 0.99536 0.91088 1.00558 1.19936 1.03725 0.96206 0.93499 1.21141 0.96904 0.94355 0.96123 1.17981 0.91070 0.89781 0.87529 0.97386 1.59211 1.12958 1.16468 1.48071 1.21773 0.91577 1.45250 1.05189 0.95346 1.26864 1.01754 0.93975 0.98715 1.70638 1.00534 1.44149 1.40107 0.83064 0.72666 0.76705 0.74464 1.20454 1.20921 1.20424 1.21016 1.03573 0.94144 0.99178 1.21166 0.97700 1.00634 0.92862 1.21117 1.03525 0.91327 1.00193 1.18666 0.98916 0.93349 0.88769 0.95669 0.90933 0.88250 0.90915 0.87116 0.89160 0.92067 0.92410 0.91779 0.87174 0.85562 0.91030 0.86551 0.83447 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.37 127.69 1.20 1.81 16 2 N -0.50 -13.88 4.74 -720.61 -3.42 -17.30 16 3 C 0.06 1.46 5.81 86.52 0.50 1.96 16 4 C -0.15 -4.32 6.03 30.74 0.19 -4.13 16 5 C -0.08 -3.09 4.64 29.89 0.14 -2.95 16 6 C -0.13 -5.25 5.74 -19.71 -0.11 -5.37 16 7 C -0.08 -3.61 5.02 -19.82 -0.10 -3.71 16 8 C 0.25 12.42 1.84 43.42 0.08 12.50 16 9 H 0.01 0.47 7.14 -2.39 -0.02 0.45 16 10 N -0.84 -39.45 7.27 -174.95 -1.27 -40.72 16 11 C -0.60 -33.66 7.37 25.60 0.19 -33.47 16 12 H 0.03 1.65 7.74 -2.91 -0.02 1.63 16 13 C -0.01 -0.54 5.39 84.65 0.46 -0.08 16 14 N -0.92 -56.29 13.51 21.45 0.29 -56.00 16 15 Si 1.11 51.38 29.90 68.60 2.05 53.43 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.16 -6.10 9.24 22.24 0.21 -5.89 16 20 C -0.11 -3.30 10.03 22.18 0.22 -3.08 16 21 C -0.14 -4.36 9.21 22.50 0.21 -4.16 16 22 C 0.10 3.37 5.12 38.30 0.20 3.57 16 23 H 0.02 0.63 6.38 -2.39 -0.02 0.61 16 24 H 0.07 1.59 7.56 -2.39 -0.02 1.57 16 25 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 27 H 0.11 2.03 8.05 -2.39 -0.02 2.01 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.83 6.38 -2.39 -0.02 1.82 16 30 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 31 H 0.06 2.98 6.36 -2.39 -0.02 2.97 16 32 H 0.32 13.24 9.06 -89.70 -0.81 12.43 16 33 H 0.33 14.96 7.25 -89.70 -0.65 14.31 16 34 H 0.28 17.27 6.39 -92.71 -0.59 16.68 16 35 H 0.12 4.24 6.22 -2.91 -0.02 4.22 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -66.15 288.69 0.82 -65.33 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.20 Total: 38.26 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 3.37 Total: -42.99 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.40 Total: -114.02 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -66.15 0.82 -65.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.617 kcal (2) G-P(sol) polarization free energy of solvation -66.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds