Wall clock time and date at job start Mon Mar 30 2020 04:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47905 * 110.99531 * 2 1 4 4 C 1.54602 * 102.62034 * 149.11213 * 3 2 1 5 5 C 1.51578 * 102.83621 * 334.46305 * 4 3 2 6 6 C 1.37916 * 131.56040 * 196.06642 * 5 4 3 7 7 C 1.38298 * 120.08054 * 179.64504 * 6 5 4 8 8 C 1.38315 * 119.87956 * 359.73643 * 7 6 5 9 9 C 1.37905 * 120.26287 * 0.64327 * 8 7 6 10 10 C 1.50697 * 119.89730 * 179.72437 * 9 8 7 11 11 H 1.09006 * 109.47014 * 181.53570 * 10 9 8 12 12 C 1.50698 * 109.47584 * 301.53494 * 10 9 8 13 13 H 1.08004 * 119.99878 * 0.02562 * 12 10 9 14 14 C 1.37882 * 120.00206 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99776 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99966 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47279 * 59.99774 * 16 14 12 18 18 H 1.48495 * 109.47249 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47115 * 299.99775 * 16 14 12 20 20 C 1.53002 * 109.47177 * 61.53837 * 10 9 8 21 21 N 1.46900 * 109.47326 * 64.99535 * 20 10 9 22 22 C 1.38964 * 107.95256 * 15.93823 * 5 4 3 23 23 H 1.08996 * 109.47301 * 269.89363 * 1 2 3 24 24 H 1.09001 * 109.47330 * 29.90097 * 1 2 3 25 25 H 1.09000 * 109.46568 * 149.89816 * 1 2 3 26 26 H 1.09002 * 110.78545 * 30.83222 * 3 2 1 27 27 H 1.09002 * 110.78043 * 267.38755 * 3 2 1 28 28 H 1.09007 * 110.74319 * 216.12239 * 4 3 2 29 29 H 1.09007 * 110.89812 * 92.87472 * 4 3 2 30 30 H 1.08002 * 119.96415 * 359.63311 * 6 5 4 31 31 H 1.08001 * 120.06512 * 180.02562 * 7 6 5 32 32 H 1.08004 * 119.86494 * 180.39140 * 8 7 6 33 33 H 0.96999 * 119.99444 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.46728 * 304.99740 * 20 10 9 35 35 H 1.09003 * 109.47184 * 185.00065 * 20 10 9 36 36 H 1.00896 * 111.00318 * 180.02562 * 21 20 10 37 37 H 1.00899 * 110.99760 * 303.95446 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3287 1.2323 0.7745 5 6 3.0802 0.0127 1.6395 6 6 3.7401 -0.4716 2.7496 7 6 3.2974 -1.6253 3.3706 8 6 2.1882 -2.2900 2.8797 9 6 1.5296 -1.8142 1.7654 10 6 0.3257 -2.5483 1.2339 11 1 -0.0423 -2.0439 0.3404 12 6 0.7121 -3.9634 0.8886 13 1 1.7280 -4.2979 1.0394 14 6 -0.2311 -4.8312 0.3802 15 7 -1.4681 -4.4240 0.1971 16 14 0.2478 -6.5854 -0.0471 17 1 0.7481 -7.2726 1.1705 18 1 -0.9385 -7.3088 -0.5710 19 1 1.3146 -6.5697 -1.0802 20 6 -0.7727 -2.5650 2.2989 21 7 -1.2334 -1.1927 2.5489 22 6 1.9708 -0.6531 1.1326 23 1 -0.3634 -0.0019 1.0276 24 1 -0.3634 0.8909 -0.5123 25 1 -0.3632 -0.8891 -0.5154 26 1 1.3206 2.0555 0.5223 27 1 2.1809 1.7253 -1.0181 28 1 3.5166 2.1113 1.3913 29 1 4.1596 1.0579 0.0907 30 1 4.6036 0.0507 3.1343 31 1 3.8141 -2.0040 4.2401 32 1 1.8390 -3.1874 3.3687 33 1 -2.1317 -5.0347 -0.1602 34 1 -0.3774 -2.9893 3.2218 35 1 -1.6086 -3.1710 1.9493 36 1 -1.9592 -1.1769 3.2495 37 1 -0.4640 -0.5954 2.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:49 Heat of formation + Delta-G solvation = 47.281830 kcal Electronic energy + Delta-G solvation = -18565.285531 eV Core-core repulsion = 15921.655957 eV Total energy + Delta-G solvation = -2643.629575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27715 -36.41189 -35.28354 -32.24882 -31.84691 -29.78572 -28.51137 -27.32205 -24.91434 -23.78134 -22.51746 -21.31765 -20.39893 -18.92832 -16.35950 -15.93549 -15.49853 -15.21829 -14.80249 -14.71352 -14.24529 -13.59760 -13.09709 -12.76730 -12.57526 -12.36581 -12.34511 -11.80839 -11.69213 -11.47520 -11.18457 -11.04932 -10.89023 -10.80907 -10.58177 -10.27366 -9.91945 -9.34768 -9.20415 -8.98898 -8.38507 -7.83584 -7.61459 -6.98147 -5.99480 -4.05034 2.03236 2.14304 3.32753 3.37169 3.40917 4.24596 4.42024 4.55392 4.99695 5.01631 5.26477 5.37508 5.54787 5.64356 5.67259 5.83081 5.86292 5.88343 6.12299 6.14388 6.25924 6.39728 6.43606 6.59594 6.75771 6.85014 6.93397 7.00759 7.11564 7.23358 7.45742 7.60178 7.67741 7.88306 7.89762 8.03961 8.22115 8.32175 8.46988 8.97819 9.58145 11.05268 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.008358 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.994288 B = 3349.139230 C = 3612.225340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.476 5.476 3 C 0.045 3.955 4 C -0.079 4.079 5 C -0.156 4.156 6 C -0.108 4.108 7 C -0.152 4.152 8 C -0.095 4.095 9 C -0.050 4.050 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.505 4.505 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.067 3.933 21 N -0.850 5.850 22 C 0.093 3.907 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.261 0.739 34 H -0.003 1.003 35 H 0.107 0.893 36 H 0.320 0.680 37 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 9.733 3.891 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.190 5.190 3 C -0.081 4.081 4 C -0.116 4.116 5 C -0.159 4.159 6 C -0.126 4.126 7 C -0.171 4.171 8 C -0.113 4.113 9 C -0.052 4.052 10 C 0.046 3.954 11 H 0.086 0.914 12 C -0.544 4.544 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.063 4.063 21 N -0.378 5.378 22 C -0.005 4.005 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.015 0.985 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.737 9.431 2.507 10.847 hybrid contribution 0.482 -0.929 1.294 1.664 sum 5.219 8.502 3.802 10.676 Atomic orbital electron populations 1.23179 0.84674 1.02186 1.04389 1.60504 1.10177 1.12757 1.35566 1.23240 0.95059 0.89207 1.00627 1.21196 0.97741 0.95716 0.96978 1.20392 0.99123 0.98737 0.97653 1.20079 0.99729 0.97077 0.95742 1.20892 0.98532 0.96645 1.01066 1.20843 0.94944 0.99233 0.96316 1.20065 0.99034 0.92512 0.93618 1.18296 0.86975 0.94765 0.95326 0.91412 1.21084 0.95886 0.95174 1.42258 0.92600 1.24957 0.95039 0.98487 0.95432 1.69858 1.02049 1.35518 1.45134 0.86662 0.77877 0.84711 0.78818 1.20374 1.21306 1.20256 1.22153 1.01412 0.86722 0.96012 1.59103 1.14709 1.13109 1.50835 1.19583 0.95874 0.95534 0.89476 0.90284 0.93309 0.89046 0.92849 0.89586 0.91086 0.90300 0.87461 0.87039 0.86058 0.92892 0.98466 0.87475 0.86926 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 8.29 60.07 0.50 0.52 16 2 N -0.48 -9.00 5.30 -176.84 -0.94 -9.94 16 3 C 0.05 0.66 6.71 -2.43 -0.02 0.64 16 4 C -0.08 -1.12 7.04 -26.61 -0.19 -1.30 16 5 C -0.16 -2.75 6.23 -104.04 -0.65 -3.40 16 6 C -0.11 -1.78 10.03 -39.68 -0.40 -2.18 16 7 C -0.15 -2.64 10.06 -39.53 -0.40 -3.03 16 8 C -0.09 -1.91 8.57 -39.67 -0.34 -2.25 16 9 C -0.05 -1.08 3.65 -104.31 -0.38 -1.46 16 10 C 0.06 1.58 1.62 -92.93 -0.15 1.42 16 11 H 0.07 1.78 3.99 -51.93 -0.21 1.58 16 12 C -0.51 -13.73 8.19 -34.44 -0.28 -14.01 16 13 H 0.06 1.54 7.55 -52.48 -0.40 1.15 16 14 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 15 N -0.89 -24.71 11.29 55.43 0.63 -24.08 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.07 1.53 5.99 -3.82 -0.02 1.51 16 21 N -0.85 -16.26 7.80 -10.37 -0.08 -16.34 16 22 C 0.09 1.89 5.69 -83.41 -0.47 1.41 16 23 H 0.08 1.50 4.13 -51.93 -0.21 1.29 16 24 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 25 H 0.09 2.00 5.98 -51.93 -0.31 1.69 16 26 H 0.05 0.71 7.85 -51.93 -0.41 0.31 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 2.48 7.58 -52.48 -0.40 2.08 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.00 -0.07 7.30 -51.93 -0.38 -0.45 16 35 H 0.11 2.79 5.95 -51.93 -0.31 2.48 16 36 H 0.32 5.40 9.08 -39.29 -0.36 5.04 16 37 H 0.32 5.89 7.09 -39.29 -0.28 5.61 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -28.44 285.75 -8.91 -37.35 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -4.91 Total: 12.97 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.89 Total: -20.53 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.39 Total: -50.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.44 -8.91 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.633 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds