Wall clock time and date at job start Mon Mar 30 2020 04:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47905 * 110.99531 * 2 1 4 4 C 1.54602 * 102.62034 * 149.11213 * 3 2 1 5 5 C 1.51578 * 102.83621 * 334.46305 * 4 3 2 6 6 C 1.37916 * 131.56040 * 196.06642 * 5 4 3 7 7 C 1.38298 * 120.08054 * 179.64504 * 6 5 4 8 8 C 1.38315 * 119.87956 * 359.73643 * 7 6 5 9 9 C 1.37905 * 120.26287 * 0.64327 * 8 7 6 10 10 C 1.50697 * 119.89730 * 179.72437 * 9 8 7 11 11 H 1.09006 * 109.47014 * 181.53570 * 10 9 8 12 12 C 1.50698 * 109.47584 * 301.53494 * 10 9 8 13 13 H 1.08004 * 119.99878 * 0.02562 * 12 10 9 14 14 C 1.37882 * 120.00206 * 180.02562 * 12 10 9 15 15 N 1.31513 * 119.99776 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99966 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47279 * 59.99774 * 16 14 12 18 18 H 1.48495 * 109.47249 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47115 * 299.99775 * 16 14 12 20 20 C 1.53002 * 109.47177 * 61.53837 * 10 9 8 21 21 N 1.46900 * 109.47326 * 64.99535 * 20 10 9 22 22 C 1.38964 * 107.95256 * 15.93823 * 5 4 3 23 23 H 1.08996 * 109.47301 * 269.89363 * 1 2 3 24 24 H 1.09001 * 109.47330 * 29.90097 * 1 2 3 25 25 H 1.09000 * 109.46568 * 149.89816 * 1 2 3 26 26 H 1.09002 * 110.78545 * 30.83222 * 3 2 1 27 27 H 1.09002 * 110.78043 * 267.38755 * 3 2 1 28 28 H 1.09007 * 110.74319 * 216.12239 * 4 3 2 29 29 H 1.09007 * 110.89812 * 92.87472 * 4 3 2 30 30 H 1.08002 * 119.96415 * 359.63311 * 6 5 4 31 31 H 1.08001 * 120.06512 * 180.02562 * 7 6 5 32 32 H 1.08004 * 119.86494 * 180.39140 * 8 7 6 33 33 H 0.96999 * 119.99444 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.46728 * 304.99740 * 20 10 9 35 35 H 1.09003 * 109.47184 * 185.00065 * 20 10 9 36 36 H 1.00896 * 111.00318 * 180.02562 * 21 20 10 37 37 H 1.00899 * 110.99760 * 303.95446 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3287 1.2323 0.7745 5 6 3.0802 0.0127 1.6395 6 6 3.7401 -0.4716 2.7496 7 6 3.2974 -1.6253 3.3706 8 6 2.1882 -2.2900 2.8797 9 6 1.5296 -1.8142 1.7654 10 6 0.3257 -2.5483 1.2339 11 1 -0.0423 -2.0439 0.3404 12 6 0.7121 -3.9634 0.8886 13 1 1.7280 -4.2979 1.0394 14 6 -0.2311 -4.8312 0.3802 15 7 -1.4681 -4.4240 0.1971 16 14 0.2478 -6.5854 -0.0471 17 1 0.7481 -7.2726 1.1705 18 1 -0.9385 -7.3088 -0.5710 19 1 1.3146 -6.5697 -1.0802 20 6 -0.7727 -2.5650 2.2989 21 7 -1.2334 -1.1927 2.5489 22 6 1.9708 -0.6531 1.1326 23 1 -0.3634 -0.0019 1.0276 24 1 -0.3634 0.8909 -0.5123 25 1 -0.3632 -0.8891 -0.5154 26 1 1.3206 2.0555 0.5223 27 1 2.1809 1.7253 -1.0181 28 1 3.5166 2.1113 1.3913 29 1 4.1596 1.0579 0.0907 30 1 4.6036 0.0507 3.1343 31 1 3.8141 -2.0040 4.2401 32 1 1.8390 -3.1874 3.3687 33 1 -2.1317 -5.0347 -0.1602 34 1 -0.3774 -2.9893 3.2218 35 1 -1.6086 -3.1710 1.9493 36 1 -1.9592 -1.1769 3.2495 37 1 -0.4640 -0.5954 2.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:49 Heat of formation + Delta-G solvation = 28.456595 kcal Electronic energy + Delta-G solvation = -18566.101855 eV Core-core repulsion = 15921.655957 eV Total energy + Delta-G solvation = -2644.445898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66211 -37.91237 -36.88368 -34.22021 -33.30164 -31.31211 -29.85408 -28.99201 -26.47613 -25.65920 -23.88279 -22.77384 -21.85753 -20.52673 -18.32439 -17.43837 -16.91452 -16.59842 -16.53839 -16.28925 -15.75615 -15.28926 -14.67421 -14.27885 -14.07402 -13.92712 -13.69787 -13.41688 -13.14474 -12.93646 -12.82653 -12.76027 -12.42498 -12.28336 -12.17607 -12.08910 -11.66789 -11.07016 -10.92235 -10.59624 -10.38773 -9.34893 -9.25726 -8.40414 -8.06143 -6.19384 0.61670 0.71386 1.39415 1.40363 1.48064 2.42684 2.89901 3.13396 3.19268 3.76995 3.85606 4.01060 4.25116 4.30705 4.36468 4.42880 4.62025 4.70016 4.74874 4.81460 4.87124 4.93169 5.03152 5.11294 5.15949 5.29929 5.32132 5.51044 5.59521 5.70229 5.76723 5.98964 6.04441 6.12628 6.26373 6.32782 6.52611 6.57695 6.74877 6.93257 7.46157 8.95364 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.008358 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.994288 B = 3349.139230 C = 3612.225340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.498 5.498 3 C 0.043 3.957 4 C -0.072 4.072 5 C -0.158 4.158 6 C -0.100 4.100 7 C -0.148 4.148 8 C -0.114 4.114 9 C -0.079 4.079 10 C 0.068 3.932 11 H 0.045 0.955 12 C -0.523 4.523 13 H 0.042 0.958 14 C 0.018 3.982 15 N -0.909 5.909 16 Si 0.947 3.053 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.083 3.917 21 N -0.840 5.840 22 C 0.071 3.929 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.261 0.739 34 H -0.010 1.010 35 H 0.074 0.926 36 H 0.335 0.665 37 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 11.634 4.498 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.212 5.212 3 C -0.082 4.082 4 C -0.109 4.109 5 C -0.161 4.161 6 C -0.119 4.119 7 C -0.167 4.167 8 C -0.132 4.132 9 C -0.082 4.082 10 C 0.050 3.950 11 H 0.063 0.937 12 C -0.562 4.562 13 H 0.060 0.940 14 C -0.181 4.181 15 N -0.548 5.548 16 Si 0.773 3.227 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.047 4.047 21 N -0.369 5.369 22 C -0.027 4.027 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.008 0.992 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.678 11.348 3.124 13.532 hybrid contribution -0.078 -1.451 1.111 1.829 sum 6.600 9.897 4.234 12.627 Atomic orbital electron populations 1.22937 0.85344 1.01315 1.03715 1.60467 1.09842 1.15414 1.35477 1.23430 0.95516 0.87021 1.02280 1.21287 0.97548 0.95266 0.96798 1.20901 0.97846 0.99511 0.97818 1.20522 1.00155 0.96388 0.94792 1.21196 0.97248 0.96588 1.01679 1.20821 0.96514 0.99422 0.96487 1.19880 0.99092 0.93920 0.95264 1.18077 0.88701 0.93385 0.94853 0.93708 1.21383 0.95266 0.97153 1.42366 0.94016 1.25633 0.95064 1.01911 0.95517 1.69989 1.02673 1.36485 1.45672 0.85778 0.77586 0.80722 0.78565 1.19738 1.20637 1.20360 1.21735 0.99756 0.88040 0.95218 1.58921 1.15256 1.11095 1.51669 1.19780 0.97228 0.95563 0.90144 0.90848 0.90601 0.93321 0.91368 0.87671 0.87774 0.89264 0.83540 0.84119 0.87759 0.93013 0.99225 0.90787 0.85268 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 8.29 127.69 1.06 1.54 16 2 N -0.50 -18.39 5.30 -713.41 -3.78 -22.18 16 3 C 0.04 1.12 6.71 86.66 0.58 1.70 16 4 C -0.07 -1.73 7.04 30.67 0.22 -1.51 16 5 C -0.16 -5.09 6.23 -19.49 -0.12 -5.21 16 6 C -0.10 -2.95 10.03 22.21 0.22 -2.72 16 7 C -0.15 -4.80 10.06 22.30 0.22 -4.58 16 8 C -0.11 -4.61 8.57 22.21 0.19 -4.42 16 9 C -0.08 -3.50 3.65 -19.67 -0.07 -3.57 16 10 C 0.07 3.48 1.62 -12.29 -0.02 3.46 16 11 H 0.05 2.50 3.99 -2.38 -0.01 2.49 16 12 C -0.52 -29.69 8.19 25.60 0.21 -29.48 16 13 H 0.04 2.41 7.55 -2.91 -0.02 2.39 16 14 C 0.02 1.00 5.29 84.66 0.45 1.45 16 15 N -0.91 -52.66 11.29 21.45 0.24 -52.42 16 16 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 C 0.08 3.99 5.99 86.30 0.52 4.50 16 21 N -0.84 -32.78 7.80 -186.71 -1.46 -34.24 16 22 C 0.07 2.82 5.69 38.28 0.22 3.04 16 23 H 0.07 2.82 4.13 -2.39 -0.01 2.81 16 24 H 0.08 2.34 7.77 -2.39 -0.02 2.33 16 25 H 0.05 2.25 5.98 -2.39 -0.01 2.23 16 26 H 0.07 1.57 7.85 -2.39 -0.02 1.55 16 27 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.10 4.44 7.58 -2.91 -0.02 4.42 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 34 H -0.01 -0.50 7.30 -2.39 -0.02 -0.52 16 35 H 0.07 4.06 5.95 -2.39 -0.01 4.04 16 36 H 0.34 11.34 9.08 -89.70 -0.81 10.52 16 37 H 0.33 12.13 7.09 -89.69 -0.64 11.49 16 Total: -1.00 -64.22 285.75 0.35 -63.87 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.35 Total: 33.94 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.67 Total: -35.81 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.00 Total: -108.84 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.22 0.35 -63.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.330 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds