Wall clock time and date at job start Mon Mar 30 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47903 * 111.00196 * 2 1 4 4 C 1.54597 * 102.63924 * 265.34431 * 3 2 1 5 5 C 1.51576 * 102.81931 * 334.39427 * 4 3 2 6 6 C 1.39010 * 107.94106 * 16.18139 * 5 4 3 7 7 C 1.39362 * 119.08897 * 180.32862 * 6 5 4 8 8 C 1.37942 * 120.19730 * 359.78389 * 7 6 5 9 9 C 1.38264 * 120.26939 * 0.02562 * 8 7 6 10 10 C 1.37868 * 131.57528 * 196.45499 * 5 4 3 11 11 C 1.50697 * 119.96178 * 359.79943 * 10 5 4 12 12 H 1.09004 * 109.47098 * 359.97438 * 11 10 5 13 13 C 1.50706 * 109.47269 * 119.99630 * 11 10 5 14 14 H 1.07997 * 119.99837 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99990 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00131 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00007 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47065 * 59.99607 * 17 15 13 19 19 H 1.48496 * 109.47152 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47111 * 299.99663 * 17 15 13 21 21 C 1.53005 * 109.47291 * 239.99564 * 11 10 5 22 22 N 1.46898 * 109.46654 * 64.99680 * 21 11 10 23 23 H 1.08999 * 109.47223 * 59.86746 * 1 2 3 24 24 H 1.09004 * 109.47226 * 179.87462 * 1 2 3 25 25 H 1.09000 * 109.46743 * 299.87281 * 1 2 3 26 26 H 1.08996 * 110.77612 * 147.05381 * 3 2 1 27 27 H 1.09008 * 110.77418 * 23.62633 * 3 2 1 28 28 H 1.09002 * 110.74029 * 216.06978 * 4 3 2 29 29 H 1.08996 * 110.74730 * 92.72668 * 4 3 2 30 30 H 1.08003 * 119.89585 * 179.76058 * 7 6 5 31 31 H 1.08002 * 119.87039 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.06013 * 180.12731 * 9 8 7 33 33 H 0.97001 * 120.00309 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47054 * 184.99865 * 21 11 10 35 35 H 1.08996 * 109.47024 * 304.99778 * 21 11 10 36 36 H 1.00901 * 110.99550 * 179.97438 * 22 21 11 37 37 H 1.00892 * 111.00671 * 303.95443 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 2.2347 1.6527 -1.5035 5 6 2.4362 0.2611 -2.0694 6 6 1.9708 -0.6539 -1.1321 7 6 2.0526 -2.0158 -1.4161 8 6 2.5849 -2.4439 -2.6146 9 6 3.0414 -1.5257 -3.5420 10 6 2.9697 -0.1721 -3.2646 11 6 3.4729 0.8300 -4.2714 12 1 3.3326 1.8383 -3.8818 13 6 4.9381 0.5902 -4.5298 14 1 5.4533 -0.2083 -4.0166 15 6 5.6209 1.3902 -5.4213 16 7 4.9934 2.3622 -6.0466 17 14 7.4369 1.0925 -5.7421 18 1 7.6270 -0.2808 -6.2739 19 1 7.9327 2.0801 -6.7341 20 1 8.1945 1.2414 -4.4736 21 6 2.6926 0.6756 -5.5785 22 7 1.2841 1.0257 -5.3521 23 1 -0.3633 0.5159 -0.8888 24 1 -0.3634 -1.0277 -0.0022 25 1 -0.3633 0.5119 0.8911 26 1 2.9361 1.4352 0.5542 27 1 1.2659 2.0764 0.4085 28 1 3.1264 2.2620 -1.6505 29 1 1.3623 2.1288 -1.9511 30 1 1.6985 -2.7382 -0.6956 31 1 2.6461 -3.5006 -2.8290 32 1 3.4557 -1.8645 -4.4800 33 1 5.4736 2.9248 -6.6741 34 1 3.1149 1.3381 -6.3341 35 1 2.7598 -0.3567 -5.9219 36 1 0.7473 0.9321 -6.2013 37 1 0.8877 0.4687 -4.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261050697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:51 Heat of formation + Delta-G solvation = 33.823376 kcal Electronic energy + Delta-G solvation = -18227.737786 eV Core-core repulsion = 15583.524609 eV Total energy + Delta-G solvation = -2644.213177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31135 -36.90792 -34.74596 -32.20345 -31.80882 -29.91979 -28.60469 -27.04175 -25.53112 -23.88834 -22.55130 -21.21356 -20.60816 -18.74322 -16.43174 -16.00079 -15.70009 -15.02264 -14.80080 -14.62176 -14.38967 -13.68296 -13.35200 -13.04537 -12.81427 -12.57454 -12.10039 -11.93346 -11.71398 -11.61266 -11.20930 -11.09343 -10.87534 -10.75135 -10.65228 -10.34569 -10.23727 -9.46470 -9.25766 -8.88508 -8.47442 -7.81343 -7.61199 -7.41406 -6.04453 -4.12451 1.94060 2.10609 3.29309 3.34118 3.37332 4.00674 4.32996 4.45915 5.07843 5.22154 5.27874 5.30841 5.40034 5.57770 5.61210 5.73054 5.75815 5.87915 5.90041 6.08166 6.08371 6.21769 6.37989 6.50078 6.64490 6.77681 6.88525 6.94602 7.09178 7.16836 7.28356 7.37077 7.62297 7.80960 7.87117 7.94736 8.18714 8.35725 8.42593 8.91920 9.52286 11.00134 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.007177 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.739626 B = 3900.339977 C = 3928.177209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.497 5.497 3 C 0.048 3.952 4 C -0.104 4.104 5 C -0.134 4.134 6 C 0.073 3.927 7 C -0.136 4.136 8 C -0.114 4.114 9 C -0.126 4.126 10 C -0.005 4.005 11 C 0.082 3.918 12 H 0.045 0.955 13 C -0.511 4.511 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.068 3.932 22 N -0.852 5.852 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.262 0.738 34 H 0.106 0.894 35 H -0.002 1.002 36 H 0.320 0.680 37 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 -4.372 7.377 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.215 5.215 3 C -0.078 4.078 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.022 4.022 7 C -0.156 4.156 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.005 4.005 11 C 0.063 3.937 12 H 0.063 0.937 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.061 4.061 22 N -0.379 5.379 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.016 0.984 36 H 0.130 0.870 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.394 -3.730 7.939 11.472 hybrid contribution 0.646 -0.812 -1.154 1.552 sum -6.748 -4.543 6.785 10.593 Atomic orbital electron populations 1.22423 0.86498 1.02150 1.00697 1.60267 1.07851 1.14886 1.38491 1.23155 1.00654 0.87667 0.96366 1.21557 1.03027 0.95211 0.94407 1.20762 1.03418 0.94792 0.94698 1.19462 0.99697 0.93559 0.89457 1.20168 1.05003 0.92603 0.97789 1.20821 0.99674 0.98959 0.93833 1.21026 1.01008 0.92663 0.99784 1.19989 0.91621 0.95029 0.93884 1.17887 0.93703 0.93200 0.88911 0.93717 1.21065 0.93214 1.16090 1.24625 0.92400 1.24981 0.98203 0.94902 0.95765 1.69876 1.35996 1.18673 1.27749 0.86642 0.85275 0.77969 0.78081 1.20243 1.21230 1.20208 1.22114 0.85210 0.97103 1.01722 1.58970 1.05162 1.63425 1.10341 0.94914 0.91477 0.91370 0.89692 0.90394 0.89402 0.90477 0.87195 0.86727 0.86043 0.92778 0.87563 0.98380 0.87003 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.29 60.07 0.56 0.92 16 2 N -0.50 -7.75 5.33 -176.84 -0.94 -8.69 16 3 C 0.05 0.71 7.00 -2.43 -0.02 0.69 16 4 C -0.10 -1.82 6.19 -26.61 -0.16 -1.98 16 5 C -0.13 -2.65 6.06 -104.04 -0.63 -3.28 16 6 C 0.07 1.31 5.59 -83.40 -0.47 0.84 16 7 C -0.14 -2.29 10.07 -39.27 -0.40 -2.68 16 8 C -0.11 -1.95 10.02 -39.68 -0.40 -2.35 16 9 C -0.13 -2.51 8.67 -39.53 -0.34 -2.85 16 10 C 0.00 -0.10 3.76 -104.72 -0.39 -0.49 16 11 C 0.08 2.01 2.15 -92.92 -0.20 1.81 16 12 H 0.04 1.22 7.06 -51.93 -0.37 0.85 16 13 C -0.51 -13.75 8.25 -34.44 -0.28 -14.03 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 16 N -0.88 -24.72 11.29 55.43 0.63 -24.09 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.07 1.60 5.98 -3.82 -0.02 1.57 16 22 N -0.85 -17.15 9.62 -10.37 -0.10 -17.25 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.08 0.93 7.76 -51.92 -0.40 0.52 16 28 H 0.09 1.63 7.92 -51.93 -0.41 1.22 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 2.44 7.54 -52.49 -0.40 2.05 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.11 2.82 5.95 -51.93 -0.31 2.51 16 35 H 0.00 -0.05 7.21 -51.93 -0.37 -0.42 16 36 H 0.32 5.65 9.08 -39.29 -0.36 5.29 16 37 H 0.32 6.15 8.07 -39.30 -0.32 5.84 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -28.51 298.71 -9.21 -37.72 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.43 Total: 12.02 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.85 Total: -20.20 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.42 Total: -50.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.51 -9.21 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.541 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds