Wall clock time and date at job start Mon Mar 30 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47903 * 111.00196 * 2 1 4 4 C 1.54597 * 102.63924 * 265.34431 * 3 2 1 5 5 C 1.51576 * 102.81931 * 334.39427 * 4 3 2 6 6 C 1.39010 * 107.94106 * 16.18139 * 5 4 3 7 7 C 1.39362 * 119.08897 * 180.32862 * 6 5 4 8 8 C 1.37942 * 120.19730 * 359.78389 * 7 6 5 9 9 C 1.38264 * 120.26939 * 0.02562 * 8 7 6 10 10 C 1.37868 * 131.57528 * 196.45499 * 5 4 3 11 11 C 1.50697 * 119.96178 * 359.79943 * 10 5 4 12 12 H 1.09004 * 109.47098 * 359.97438 * 11 10 5 13 13 C 1.50706 * 109.47269 * 119.99630 * 11 10 5 14 14 H 1.07997 * 119.99837 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99990 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00131 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00007 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47065 * 59.99607 * 17 15 13 19 19 H 1.48496 * 109.47152 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47111 * 299.99663 * 17 15 13 21 21 C 1.53005 * 109.47291 * 239.99564 * 11 10 5 22 22 N 1.46898 * 109.46654 * 64.99680 * 21 11 10 23 23 H 1.08999 * 109.47223 * 59.86746 * 1 2 3 24 24 H 1.09004 * 109.47226 * 179.87462 * 1 2 3 25 25 H 1.09000 * 109.46743 * 299.87281 * 1 2 3 26 26 H 1.08996 * 110.77612 * 147.05381 * 3 2 1 27 27 H 1.09008 * 110.77418 * 23.62633 * 3 2 1 28 28 H 1.09002 * 110.74029 * 216.06978 * 4 3 2 29 29 H 1.08996 * 110.74730 * 92.72668 * 4 3 2 30 30 H 1.08003 * 119.89585 * 179.76058 * 7 6 5 31 31 H 1.08002 * 119.87039 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.06013 * 180.12731 * 9 8 7 33 33 H 0.97001 * 120.00309 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.47054 * 184.99865 * 21 11 10 35 35 H 1.08996 * 109.47024 * 304.99778 * 21 11 10 36 36 H 1.00901 * 110.99550 * 179.97438 * 22 21 11 37 37 H 1.00892 * 111.00671 * 303.95443 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 2.2347 1.6527 -1.5035 5 6 2.4362 0.2611 -2.0694 6 6 1.9708 -0.6539 -1.1321 7 6 2.0526 -2.0158 -1.4161 8 6 2.5849 -2.4439 -2.6146 9 6 3.0414 -1.5257 -3.5420 10 6 2.9697 -0.1721 -3.2646 11 6 3.4729 0.8300 -4.2714 12 1 3.3326 1.8383 -3.8818 13 6 4.9381 0.5902 -4.5298 14 1 5.4533 -0.2083 -4.0166 15 6 5.6209 1.3902 -5.4213 16 7 4.9934 2.3622 -6.0466 17 14 7.4369 1.0925 -5.7421 18 1 7.6270 -0.2808 -6.2739 19 1 7.9327 2.0801 -6.7341 20 1 8.1945 1.2414 -4.4736 21 6 2.6926 0.6756 -5.5785 22 7 1.2841 1.0257 -5.3521 23 1 -0.3633 0.5159 -0.8888 24 1 -0.3634 -1.0277 -0.0022 25 1 -0.3633 0.5119 0.8911 26 1 2.9361 1.4352 0.5542 27 1 1.2659 2.0764 0.4085 28 1 3.1264 2.2620 -1.6505 29 1 1.3623 2.1288 -1.9511 30 1 1.6985 -2.7382 -0.6956 31 1 2.6461 -3.5006 -2.8290 32 1 3.4557 -1.8645 -4.4800 33 1 5.4736 2.9248 -6.6741 34 1 3.1149 1.3381 -6.3341 35 1 2.7598 -0.3567 -5.9219 36 1 0.7473 0.9321 -6.2013 37 1 0.8877 0.4687 -4.6101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:51 Heat of formation + Delta-G solvation = 15.126944 kcal Electronic energy + Delta-G solvation = -18228.548524 eV Core-core repulsion = 15583.524609 eV Total energy + Delta-G solvation = -2645.023915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66385 -38.41168 -36.40535 -34.18445 -33.22400 -31.43405 -29.97957 -28.72993 -26.69035 -25.86675 -24.00696 -22.73038 -22.03552 -20.34453 -18.40160 -17.43384 -17.08285 -16.69190 -16.30029 -16.16619 -15.93947 -15.33998 -14.76788 -14.56959 -14.16332 -14.00727 -13.71888 -13.37923 -13.08305 -13.03017 -12.80168 -12.75147 -12.56572 -12.38867 -12.20954 -12.04646 -11.92536 -11.26882 -11.10777 -10.53614 -10.23136 -9.42698 -9.27233 -8.75789 -8.11187 -6.26733 0.51824 0.65439 1.40299 1.40800 1.48996 2.40638 2.79104 2.95221 3.14141 3.81106 3.97958 4.04268 4.12881 4.23179 4.32271 4.40654 4.59039 4.64215 4.67443 4.71756 4.78311 4.84474 4.96090 5.01039 5.06422 5.12296 5.34861 5.47190 5.55747 5.60865 5.66239 5.82523 5.94954 6.05330 6.15332 6.25830 6.44931 6.54062 6.72892 6.88240 7.41233 8.91657 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.007177 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.739626 B = 3900.339977 C = 3928.177209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.500 5.500 3 C 0.056 3.944 4 C -0.104 4.104 5 C -0.160 4.160 6 C 0.077 3.923 7 C -0.132 4.132 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.028 4.028 11 C 0.090 3.910 12 H 0.006 0.994 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 0.952 3.048 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.275 1.275 21 C 0.082 3.918 22 N -0.848 5.848 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.262 0.738 34 H 0.074 0.926 35 H -0.003 1.003 36 H 0.336 0.664 37 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 -5.843 9.078 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.217 5.217 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.162 4.162 6 C -0.019 4.019 7 C -0.152 4.152 8 C -0.121 4.121 9 C -0.163 4.163 10 C -0.029 4.029 11 C 0.071 3.929 12 H 0.024 0.976 13 C -0.566 4.566 14 H 0.067 0.933 15 C -0.181 4.181 16 N -0.549 5.549 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.048 4.048 22 N -0.377 5.377 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.015 0.985 36 H 0.148 0.852 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.307 -5.206 9.646 13.754 hybrid contribution 0.856 -0.365 -1.624 1.872 sum -7.451 -5.571 8.022 12.285 Atomic orbital electron populations 1.22547 0.84380 1.03206 1.01707 1.60339 1.09608 1.14918 1.36851 1.23210 1.01815 0.88058 0.94000 1.21556 1.01816 0.94084 0.96775 1.21001 1.04095 0.96384 0.94747 1.19742 0.98802 0.93897 0.89458 1.20544 1.03844 0.92758 0.98051 1.21123 0.97872 1.00094 0.92985 1.21008 1.02384 0.92574 1.00375 1.19767 0.93816 0.95094 0.94220 1.17617 0.93001 0.92201 0.90116 0.97553 1.21348 0.94855 1.15841 1.24577 0.93293 1.25705 1.02152 0.94691 0.95579 1.70012 1.37397 1.19365 1.28173 0.85701 0.80482 0.78142 0.77910 1.19480 1.20675 1.20048 1.21743 0.86752 0.96007 1.00345 1.58799 1.03858 1.63526 1.11520 0.95626 0.90484 0.88632 0.89629 0.87171 0.91857 0.90625 0.84105 0.83334 0.87255 0.92843 0.90797 0.98501 0.85224 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.29 127.69 1.19 1.78 16 2 N -0.50 -14.14 5.33 -713.41 -3.80 -17.94 16 3 C 0.06 1.52 7.00 86.65 0.61 2.13 16 4 C -0.10 -3.67 6.19 30.67 0.19 -3.48 16 5 C -0.16 -6.30 6.06 -19.49 -0.12 -6.41 16 6 C 0.08 2.58 5.59 38.29 0.21 2.79 16 7 C -0.13 -4.04 10.07 22.47 0.23 -3.81 16 8 C -0.10 -3.25 10.02 22.21 0.22 -3.02 16 9 C -0.14 -5.72 8.67 22.30 0.19 -5.53 16 10 C -0.03 -1.24 3.76 -19.93 -0.07 -1.32 16 11 C 0.09 4.59 2.15 -12.28 -0.03 4.56 16 12 H 0.01 0.37 7.06 -2.38 -0.02 0.35 16 13 C -0.53 -29.44 8.25 25.60 0.21 -29.23 16 14 H 0.05 2.74 7.60 -2.91 -0.02 2.72 16 15 C 0.02 1.01 5.29 84.65 0.45 1.45 16 16 N -0.91 -52.66 11.29 21.45 0.24 -52.42 16 17 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 C 0.08 3.99 5.98 86.31 0.52 4.51 16 22 N -0.85 -34.70 9.62 -186.72 -1.80 -36.50 16 23 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.11 2.27 7.76 -2.38 -0.02 2.25 16 28 H 0.06 2.49 7.92 -2.39 -0.02 2.47 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.11 4.48 7.54 -2.91 -0.02 4.46 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 35 H 0.00 -0.15 7.21 -2.39 -0.02 -0.17 16 36 H 0.34 11.86 9.08 -89.69 -0.81 11.04 16 37 H 0.33 12.70 8.07 -89.70 -0.72 11.97 16 Total: -1.00 -63.15 298.71 0.00 -63.15 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.46 Total: 33.39 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 3.79 Total: -35.59 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.35 Total: -106.85 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.15 0.00 -63.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.273 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds