Wall clock time and date at job start Mon Mar 30 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47915 * 110.99840 * 2 1 4 4 C 1.54592 * 102.63488 * 94.57970 * 3 2 1 5 5 C 1.51581 * 102.82876 * 25.56152 * 4 3 2 6 6 C 1.39006 * 107.94769 * 343.96069 * 5 4 3 7 7 C 1.39357 * 119.08785 * 179.58726 * 6 5 4 8 8 C 1.37951 * 120.19899 * 0.14131 * 7 6 5 9 9 C 1.38264 * 120.26554 * 0.05053 * 8 7 6 10 10 C 1.37877 * 131.56445 * 163.80121 * 5 4 3 11 11 C 1.50702 * 119.96128 * 0.42482 * 10 5 4 12 12 H 1.08999 * 109.46986 * 0.02562 * 11 10 5 13 13 C 1.50692 * 109.47068 * 239.99775 * 11 10 5 14 14 H 1.08004 * 120.00630 * 274.94935 * 13 11 10 15 15 C 1.37884 * 119.99792 * 94.95503 * 13 11 10 16 16 N 1.31506 * 119.99709 * 5.31101 * 15 13 11 17 17 Si 1.86803 * 120.00022 * 185.31367 * 15 13 11 18 18 H 1.48500 * 109.47044 * 59.99735 * 17 15 13 19 19 H 1.48496 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47007 * 300.00040 * 17 15 13 21 21 C 1.53001 * 109.46649 * 120.00075 * 11 10 5 22 22 N 1.46901 * 109.46772 * 185.35343 * 21 11 10 23 23 H 1.09003 * 109.46513 * 300.00777 * 1 2 3 24 24 H 1.09001 * 109.47256 * 60.00264 * 1 2 3 25 25 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 26 26 H 1.09004 * 110.77383 * 212.86346 * 3 2 1 27 27 H 1.08994 * 110.77686 * 336.28817 * 3 2 1 28 28 H 1.08996 * 110.74742 * 143.89877 * 4 3 2 29 29 H 1.09000 * 110.74273 * 267.04813 * 4 3 2 30 30 H 1.08001 * 119.90481 * 180.12364 * 7 6 5 31 31 H 1.08003 * 119.87196 * 179.76432 * 8 7 6 32 32 H 1.07997 * 120.06018 * 179.86494 * 9 8 7 33 33 H 0.97008 * 119.99934 * 180.02562 * 16 15 13 34 34 H 1.08994 * 109.47567 * 305.35269 * 21 11 10 35 35 H 1.09004 * 109.47423 * 65.35332 * 21 11 10 36 36 H 1.00899 * 110.99762 * 56.04744 * 22 21 11 37 37 H 1.00909 * 110.99983 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 2.2327 1.6535 1.5037 5 6 2.4325 0.2620 2.0708 6 6 1.9709 -0.6535 1.1322 7 6 2.0536 -2.0153 1.4165 8 6 2.5847 -2.4428 2.6158 9 6 3.0375 -1.5239 3.5444 10 6 2.9599 -0.1703 3.2691 11 6 3.4518 0.8328 4.2805 12 1 3.3096 1.8409 3.8912 13 6 4.9162 0.5992 4.5485 14 1 5.2210 -0.1332 5.2815 15 6 5.8670 1.3205 3.8580 16 7 5.4976 2.2840 3.0429 17 14 7.6800 0.9288 4.0803 18 1 7.9353 -0.4779 3.6790 19 1 8.4907 1.8398 3.2330 20 1 8.0550 1.1128 5.5053 21 6 2.6633 0.6732 5.5820 22 7 3.0524 1.7320 6.5231 23 1 -0.3632 0.5140 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9368 1.4351 -0.5530 27 1 1.2665 2.0762 -0.4098 28 1 3.1245 2.2624 1.6517 29 1 1.3612 2.1333 1.9490 30 1 1.7007 -2.7381 0.6958 31 1 2.6428 -3.4993 2.8322 32 1 3.4506 -1.8622 4.4831 33 1 6.1665 2.7913 2.5568 34 1 1.5964 0.7479 5.3720 35 1 2.8799 -0.3007 6.0210 36 1 2.9215 2.6451 6.1143 37 1 2.5454 1.6482 7.3915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261050700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:53 Heat of formation + Delta-G solvation = 35.354499 kcal Electronic energy + Delta-G solvation = -18279.747016 eV Core-core repulsion = 15635.600234 eV Total energy + Delta-G solvation = -2644.146782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10811 -36.70936 -34.71128 -32.29151 -31.62293 -29.89813 -28.43182 -26.80208 -25.38211 -24.14843 -22.34010 -21.07093 -20.40378 -18.84613 -16.45883 -15.94227 -15.39886 -14.92595 -14.72033 -14.56095 -14.24346 -13.60139 -13.37193 -12.99327 -12.54652 -12.40060 -12.09374 -11.84667 -11.72768 -11.53816 -11.40254 -10.95120 -10.83944 -10.61975 -10.51114 -10.47075 -9.99674 -9.43818 -9.08485 -8.73592 -8.38514 -7.73993 -7.55529 -7.25158 -5.97433 -3.93769 2.13498 2.30136 3.38840 3.41704 3.45797 4.16981 4.48073 4.59678 5.22003 5.30642 5.45215 5.48380 5.55358 5.57700 5.69685 5.76039 5.92555 5.98423 6.07067 6.20181 6.24758 6.27522 6.35795 6.41943 6.64152 6.85241 6.94560 6.97125 7.10010 7.28893 7.31982 7.42741 7.58485 7.87071 7.97093 8.00148 8.09439 8.30449 8.45290 9.07572 9.65550 11.12178 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.008475 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.085658 B = 3302.993337 C = 3520.940431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.498 5.498 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.070 3.930 7 C -0.140 4.140 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.002 3.998 11 C 0.063 3.937 12 H 0.069 0.931 13 C -0.476 4.476 14 H 0.054 0.946 15 C 0.066 3.934 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.080 3.920 22 N -0.831 5.831 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.259 0.741 34 H -0.008 1.008 35 H 0.055 0.945 36 H 0.335 0.665 37 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -2.589 -2.674 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.215 5.215 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.130 4.130 6 C -0.025 4.025 7 C -0.160 4.160 8 C -0.136 4.136 9 C -0.144 4.144 10 C 0.001 3.999 11 C 0.044 3.956 12 H 0.087 0.913 13 C -0.514 4.514 14 H 0.072 0.928 15 C -0.135 4.135 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.050 4.050 22 N -0.358 5.358 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.069 0.931 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.368 -3.013 -3.358 9.507 hybrid contribution -0.078 0.411 0.545 0.687 sum -8.446 -2.602 -2.812 9.274 Atomic orbital electron populations 1.22398 0.86881 1.01959 1.00386 1.60275 1.07532 1.15072 1.38670 1.23125 1.00401 0.87373 0.96764 1.21607 1.03276 0.95702 0.94011 1.20706 1.02845 0.94686 0.94759 1.19471 0.99907 0.93619 0.89525 1.20106 1.05554 0.92528 0.97833 1.20764 1.00114 0.98756 0.93939 1.20899 1.01111 0.92709 0.99640 1.20107 0.89904 0.95073 0.94849 1.18063 0.94608 0.95180 0.87795 0.91328 1.20732 0.89065 1.21013 1.20567 0.92764 1.24886 0.98709 0.94631 0.95275 1.69841 1.33595 1.20938 1.28657 0.86694 0.85414 0.78127 0.77979 1.20457 1.21557 1.20271 1.21861 0.93761 0.94375 0.95035 1.58482 1.64611 1.06215 1.06517 0.95282 0.91521 0.91576 0.89696 0.90806 0.87223 0.91934 0.87481 0.86974 0.86483 0.93123 0.98970 0.92697 0.85272 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.29 60.07 0.56 0.98 16 2 N -0.50 -8.63 5.33 -176.84 -0.94 -9.57 16 3 C 0.05 0.84 7.00 -2.43 -0.02 0.82 16 4 C -0.11 -2.10 6.18 -26.61 -0.16 -2.26 16 5 C -0.13 -2.73 6.06 -104.04 -0.63 -3.36 16 6 C 0.07 1.37 5.59 -83.41 -0.47 0.91 16 7 C -0.14 -2.59 10.07 -39.27 -0.40 -2.98 16 8 C -0.12 -2.15 10.02 -39.68 -0.40 -2.54 16 9 C -0.13 -2.59 8.88 -39.53 -0.35 -2.94 16 10 C 0.00 0.06 4.76 -104.71 -0.50 -0.44 16 11 C 0.06 1.48 2.25 -92.93 -0.21 1.28 16 12 H 0.07 1.78 6.17 -51.93 -0.32 1.46 16 13 C -0.48 -12.68 7.67 -34.44 -0.26 -12.95 16 14 H 0.05 1.47 7.82 -52.48 -0.41 1.06 16 15 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 16 N -0.89 -24.75 12.77 55.43 0.71 -24.04 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.08 1.66 5.89 -3.82 -0.02 1.64 16 22 N -0.83 -16.08 9.35 -10.37 -0.10 -16.18 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 28 H 0.11 2.42 7.93 -51.93 -0.41 2.01 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.12 2.35 7.64 -52.49 -0.40 1.95 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H -0.01 -0.15 8.14 -51.93 -0.42 -0.58 16 35 H 0.05 1.13 7.58 -51.93 -0.39 0.74 16 36 H 0.34 6.37 8.99 -39.29 -0.35 6.02 16 37 H 0.32 5.08 9.08 -39.29 -0.36 4.72 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -29.02 303.64 -9.30 -38.32 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.57 Total: 10.35 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.96 Total: -20.14 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.33 Total: -49.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.02 -9.30 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.673 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds